Wall clock time and date at job start Wed Apr 1 2020 02:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99982 * 2 1 4 4 H 1.48507 * 109.46836 * 269.99970 * 3 2 1 5 5 H 1.48491 * 109.47094 * 30.00128 * 3 2 1 6 6 H 1.48499 * 109.46894 * 150.00496 * 3 2 1 7 7 C 1.37880 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00053 * 359.97438 * 7 2 1 10 10 C 1.53040 * 109.45877 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31160 * 178.61750 * 10 9 7 12 12 N 1.46929 * 108.89180 * 54.56132 * 11 10 9 13 13 C 1.34776 * 120.62681 * 126.46642 * 12 11 10 14 14 O 1.21280 * 120.00223 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00176 * 179.97438 * 13 12 11 16 16 H 1.09004 * 110.85366 * 62.33442 * 15 13 12 17 17 C 1.54636 * 110.97045 * 298.55111 * 15 13 12 18 18 C 1.51280 * 104.19182 * 266.67483 * 17 15 13 19 19 O 1.21291 * 124.93863 * 163.70983 * 18 17 15 20 20 N 1.34414 * 110.11811 * 343.74590 * 18 17 15 21 21 C 1.39926 * 124.34779 * 179.56914 * 20 18 17 22 22 C 1.38872 * 120.07356 * 353.94067 * 21 20 18 23 23 C 1.38113 * 119.92839 * 179.74345 * 22 21 20 24 24 C 1.38282 * 120.07199 * 0.52873 * 23 22 21 25 25 C 1.38281 * 120.14059 * 359.74911 * 24 23 22 26 26 C 1.38113 * 120.07002 * 359.97246 * 25 24 23 27 27 C 1.46765 * 111.30139 * 359.59495 * 20 18 17 28 28 C 1.46961 * 118.71895 * 306.64248 * 12 11 10 29 29 C 1.53046 * 109.45572 * 59.93505 * 9 7 2 30 30 H 0.97003 * 120.00091 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.46138 * 299.97687 * 9 7 2 32 32 H 1.08998 * 109.49572 * 58.66305 * 10 9 7 33 33 H 1.08998 * 109.52187 * 298.58456 * 10 9 7 34 34 H 1.09001 * 109.58944 * 174.42255 * 11 10 9 35 35 H 1.09006 * 109.58756 * 294.70697 * 11 10 9 36 36 H 1.08999 * 110.48117 * 25.35414 * 17 15 13 37 37 H 1.08999 * 110.48479 * 147.99732 * 17 15 13 38 38 H 1.07997 * 120.02906 * 0.02562 * 22 21 20 39 39 H 1.08005 * 119.95914 * 180.27611 * 23 22 21 40 40 H 1.07994 * 119.92914 * 179.71702 * 24 23 22 41 41 H 1.07997 * 119.96498 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.03562 * 180.02562 * 26 25 24 43 43 H 1.08997 * 110.24569 * 258.01469 * 27 20 18 44 44 H 1.08997 * 110.24315 * 136.01324 * 27 20 18 45 45 H 1.08997 * 109.46295 * 293.57281 * 28 12 11 46 46 H 1.08997 * 109.71214 * 173.28672 * 28 12 11 47 47 H 1.08996 * 109.49971 * 301.33214 * 29 9 7 48 48 H 1.09003 * 109.49342 * 61.40198 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4766 -4.9866 0.0343 12 7 0.5200 -5.0108 -1.0807 13 6 0.5080 -6.0383 -1.9528 14 8 1.2913 -6.9547 -1.8211 15 6 -0.4796 -6.0489 -3.0911 16 1 -0.3129 -5.2025 -3.7574 17 6 -1.9329 -6.0593 -2.5627 18 6 -2.2987 -7.5264 -2.5125 19 8 -3.2383 -7.9874 -1.8994 20 7 -1.4307 -8.2447 -3.2454 21 6 -1.4866 -9.6346 -3.3973 22 6 -2.4075 -10.3776 -2.6704 23 6 -2.4637 -11.7487 -2.8265 24 6 -1.5969 -12.3830 -3.6975 25 6 -0.6749 -11.6466 -4.4185 26 6 -0.6175 -10.2746 -4.2712 27 6 -0.4164 -7.3840 -3.8654 28 6 -0.4204 -3.8913 -1.2287 29 6 0.3695 -2.5789 -1.2491 30 1 -0.4850 0.8401 0.0004 31 1 0.6250 -2.5571 0.8899 32 1 2.8882 -3.5913 0.8771 33 1 2.8559 -3.6195 -0.9026 34 1 2.1750 -5.8175 -0.0653 35 1 0.9391 -5.0723 0.9788 36 1 -1.9796 -5.6201 -1.5663 37 1 -2.5915 -5.5251 -3.2475 38 1 -3.0820 -9.8832 -1.9870 39 1 -3.1827 -12.3265 -2.2647 40 1 -1.6398 -13.4557 -3.8144 41 1 0.0005 -12.1449 -5.0982 42 1 0.1026 -9.7000 -4.8349 43 1 -0.6515 -7.2215 -4.9173 44 1 0.5718 -7.8325 -3.7640 45 1 -1.1145 -3.8865 -0.3883 46 1 -0.9756 -3.9982 -2.1605 47 1 -0.3230 -1.7373 -1.2599 48 1 0.9968 -2.5455 -2.1400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543836821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:05 Heat of formation + Delta-G solvation = -37.199462 kcal Electronic energy + Delta-G solvation = -30103.533936 eV Core-core repulsion = 26123.122934 eV Total energy + Delta-G solvation = -3980.411002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.58065 -39.75835 -38.59075 -37.17978 -36.36477 -33.95152 -33.27859 -31.29314 -31.07156 -30.24765 -29.16586 -28.03872 -26.44560 -24.39284 -23.30049 -22.91896 -22.35926 -21.65909 -20.05546 -19.76425 -18.63354 -17.91902 -17.42921 -16.59077 -16.43166 -16.02812 -15.71262 -15.35271 -15.02714 -14.80015 -14.60549 -14.18744 -13.83597 -13.76569 -13.72695 -13.50911 -13.16827 -13.13152 -12.87734 -12.83210 -12.58095 -12.29030 -12.08537 -11.82643 -11.69871 -11.62993 -11.36556 -11.29708 -10.99799 -10.71710 -10.48167 -10.43287 -10.19661 -9.82927 -9.77421 -9.55905 -9.26717 -9.10017 -9.01985 -8.46303 -8.15897 -8.08390 -6.10623 -4.16737 1.10207 1.25461 2.37302 2.59142 2.69942 3.19544 3.23169 3.30949 3.34152 3.71178 3.93554 4.05210 4.34873 4.39979 4.55651 4.74547 4.79919 5.01048 5.03019 5.11849 5.18871 5.24757 5.28667 5.36572 5.42790 5.44815 5.48495 5.52043 5.70141 5.83054 5.86688 5.94456 6.04055 6.05452 6.15823 6.22561 6.33499 6.37607 6.41755 6.54494 6.77013 6.87050 6.92362 6.92597 7.01101 7.15794 7.57452 7.74140 7.82408 7.82715 7.94853 8.31700 8.32463 8.86653 9.48868 10.94929 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.027956 B = 0.002361 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.320932 B =11855.573225 C =12208.169857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.594 5.594 13 C 0.516 3.484 14 O -0.549 6.549 15 C -0.123 4.123 16 H 0.132 0.868 17 C -0.149 4.149 18 C 0.519 3.481 19 O -0.509 6.509 20 N -0.554 5.554 21 C 0.173 3.827 22 C -0.159 4.159 23 C -0.093 4.093 24 C -0.150 4.150 25 C -0.094 4.094 26 C -0.156 4.156 27 C 0.110 3.890 28 C 0.097 3.903 29 C -0.124 4.124 30 H 0.261 0.739 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.153 0.847 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.106 0.894 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 -16.824 -10.087 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.161 4.161 11 C -0.010 4.010 12 N -0.325 5.325 13 C 0.303 3.697 14 O -0.428 6.428 15 C -0.145 4.145 16 H 0.150 0.850 17 C -0.189 4.189 18 C 0.309 3.691 19 O -0.385 6.385 20 N -0.277 5.277 21 C 0.079 3.921 22 C -0.179 4.179 23 C -0.112 4.112 24 C -0.169 4.169 25 C -0.112 4.112 26 C -0.177 4.177 27 C -0.013 4.013 28 C -0.025 4.025 29 C -0.163 4.163 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.171 0.829 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.107 0.893 44 H 0.125 0.875 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.124 0.876 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.641 -17.365 -9.651 20.402 hybrid contribution 0.553 1.168 -0.072 1.294 sum -4.088 -16.197 -9.724 19.329 Atomic orbital electron populations 1.69820 1.05835 1.26557 1.50848 1.24956 0.94886 0.99081 0.95023 0.86612 0.79933 0.83481 0.78096 1.20723 1.21229 1.19964 1.21190 0.92962 0.90506 1.50384 0.92685 1.18643 0.92655 0.91779 0.93992 1.22006 0.98911 0.94057 1.01115 1.21738 0.91662 0.99871 0.87776 1.48202 1.35931 1.20603 1.27800 1.20049 0.84394 0.82217 0.83040 1.90666 1.41618 1.36165 1.74394 1.22300 0.94543 0.99898 0.97742 0.84981 1.22591 0.95697 0.94318 1.06322 1.21032 0.81182 0.89430 0.77468 1.90624 1.29267 1.76119 1.42479 1.45780 1.29377 1.04888 1.47669 1.17801 0.96719 0.81171 0.96441 1.21639 1.00513 0.94293 1.01413 1.21045 0.98485 0.93865 0.97755 1.21103 0.97316 0.99870 0.98649 1.20915 0.98212 0.93085 0.99006 1.20798 1.00774 0.95251 1.00836 1.22210 0.93733 0.88865 0.96462 1.22233 0.91817 0.87605 1.00864 1.22042 1.00110 0.94437 0.99701 0.92914 0.95406 0.92025 0.92890 0.90289 0.92052 0.86317 0.85894 0.82933 0.85771 0.86141 0.85729 0.85638 0.89300 0.87540 0.91588 0.91109 0.87559 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.47 11.30 55.43 0.63 -22.85 16 2 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 3 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.51 -13.07 8.56 -34.44 -0.29 -13.37 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.07 2.06 -91.73 -0.19 0.88 16 10 C -0.12 -2.37 5.30 -26.61 -0.14 -2.51 16 11 C 0.11 1.92 6.43 -3.71 -0.02 1.90 16 12 N -0.59 -9.58 2.96 -172.74 -0.51 -10.09 16 13 C 0.52 7.89 7.10 -10.99 -0.08 7.82 16 14 O -0.55 -10.01 14.92 5.56 0.08 -9.93 16 15 C -0.12 -1.34 2.57 -90.14 -0.23 -1.57 16 16 H 0.13 1.10 7.82 -51.93 -0.41 0.69 16 17 C -0.15 -1.59 5.14 -26.74 -0.14 -1.73 16 18 C 0.52 7.10 7.92 -10.86 -0.09 7.02 16 19 O -0.51 -8.36 14.82 5.55 0.08 -8.28 16 20 N -0.55 -7.00 3.14 -112.27 -0.35 -7.35 16 21 C 0.17 2.24 6.60 -83.69 -0.55 1.68 16 22 C -0.16 -2.10 9.28 -39.39 -0.37 -2.46 16 23 C -0.09 -1.00 10.04 -39.61 -0.40 -1.40 16 24 C -0.15 -1.43 10.04 -39.55 -0.40 -1.83 16 25 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 26 C -0.16 -1.69 9.41 -39.39 -0.37 -2.06 16 27 C 0.11 1.12 5.64 -3.12 -0.02 1.10 16 28 C 0.10 1.51 4.81 -3.69 -0.02 1.49 16 29 C -0.12 -2.50 5.16 -26.61 -0.14 -2.63 16 30 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.37 7.01 -51.93 -0.36 1.01 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.12 1.38 6.10 -51.93 -0.32 1.06 16 37 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.15 2.26 5.27 -52.49 -0.28 1.98 16 39 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.14 7.02 -52.49 -0.37 0.77 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.11 1.21 6.50 -51.93 -0.34 0.88 16 45 H 0.07 1.05 8.11 -51.93 -0.42 0.62 16 46 H 0.07 0.87 5.10 -51.93 -0.26 0.61 16 47 H 0.11 2.41 6.03 -51.93 -0.31 2.09 16 48 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -30.91 375.58 -10.20 -41.11 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.84 Total: 4.00 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -3.93 Total: -7.46 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.24 Total: -40.29 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.17 Total: -18.21 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.91 -10.20 -41.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543836821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.915 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds