Wall clock time and date at job start Wed Apr 1 2020 01:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30621 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48508 * 109.46923 * 269.99883 * 3 2 1 5 5 H 1.48490 * 109.47227 * 29.99714 * 3 2 1 6 6 H 1.48500 * 109.47212 * 149.99987 * 3 2 1 7 7 C 1.40273 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00249 * 169.15699 * 7 2 1 9 9 C 1.40891 * 119.99857 * 349.15495 * 7 2 1 10 10 C 1.40697 * 120.33093 * 331.58369 * 9 7 2 11 11 C 1.37596 * 119.88568 * 180.02562 * 10 9 7 12 12 C 1.38830 * 120.56978 * 0.02658 * 11 10 9 13 13 C 1.38222 * 120.67280 * 359.69651 * 12 11 10 14 14 C 1.39227 * 120.09252 * 0.55851 * 13 12 11 15 15 C 1.47431 * 120.28235 * 179.75000 * 14 13 12 16 16 O 1.21608 * 120.00519 * 130.63682 * 15 14 13 17 17 N 1.34780 * 119.99741 * 310.63456 * 15 14 13 18 18 C 1.46922 * 120.63027 * 354.58857 * 17 15 14 19 19 C 1.53194 * 108.77747 * 233.61029 * 18 17 15 20 20 C 1.53048 * 109.30932 * 305.36610 * 19 18 17 21 21 C 1.53042 * 109.53790 * 61.36860 * 20 19 18 22 22 H 1.08998 * 109.49863 * 58.60988 * 21 20 19 23 23 N 1.46491 * 109.49468 * 178.68187 * 21 20 19 24 24 C 1.46764 * 124.34827 * 240.01744 * 23 21 20 25 25 C 1.54480 * 105.47539 * 162.98560 * 24 23 21 26 26 C 1.54625 * 101.76386 * 25.41897 * 25 24 23 27 27 C 1.34422 * 124.35560 * 60.02533 * 23 21 20 28 28 O 1.21286 * 124.93741 * 0.66381 * 27 23 21 29 29 C 1.46928 * 120.62758 * 174.59373 * 17 15 14 30 30 H 0.97010 * 119.99943 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.05641 * 0.02562 * 10 9 7 32 32 H 1.08002 * 119.71801 * 180.02562 * 11 10 9 33 33 H 1.08001 * 119.66617 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.95323 * 180.27823 * 13 12 11 35 35 H 1.09002 * 109.58788 * 113.82575 * 18 17 15 36 36 H 1.09002 * 109.58871 * 353.40011 * 18 17 15 37 37 H 1.09001 * 109.49583 * 185.41845 * 19 18 17 38 38 H 1.08998 * 109.50019 * 65.31507 * 19 18 17 39 39 H 1.08994 * 109.46119 * 301.34159 * 20 19 18 40 40 H 1.09003 * 109.45441 * 181.38439 * 20 19 18 41 41 H 1.09003 * 110.24294 * 43.98752 * 24 23 21 42 42 H 1.08995 * 110.32561 * 282.02564 * 24 23 21 43 43 H 1.09000 * 110.96876 * 267.30158 * 25 24 23 44 44 H 1.08997 * 111.00281 * 143.55007 * 25 24 23 45 45 H 1.09002 * 110.48986 * 216.52708 * 26 25 24 46 46 H 1.09001 * 110.48852 * 93.87964 * 26 25 24 47 47 H 1.08996 * 109.58933 * 6.60132 * 29 17 15 48 48 H 1.08998 * 109.58109 * 246.17657 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0463 -1.4002 5 1 1.4378 2.6526 0.6999 6 1 3.5378 1.4401 0.7000 7 6 2.0075 -1.2148 0.0005 8 1 3.0730 -1.2233 -0.1754 9 6 1.3219 -2.4239 0.2307 10 6 0.1536 -2.4402 1.0145 11 6 -0.5085 -3.6263 1.2338 12 6 -0.0337 -4.8113 0.6882 13 6 1.1086 -4.8213 -0.0901 14 6 1.8034 -3.6380 -0.3255 15 6 3.0252 -3.6448 -1.1505 16 8 3.1528 -2.8420 -2.0549 17 7 4.0009 -4.5408 -0.9022 18 6 3.9157 -5.4381 0.2582 19 6 5.2004 -5.3026 1.0816 20 6 6.4096 -5.5562 0.1783 21 6 6.4407 -4.5123 -0.9404 22 1 6.4907 -3.5142 -0.5053 23 7 7.6157 -4.7367 -1.7859 24 6 8.6840 -3.7528 -1.9971 25 6 9.8748 -4.5536 -2.5691 26 6 9.1593 -5.7574 -3.2247 27 6 7.8540 -5.8701 -2.4682 28 8 7.1260 -6.8401 -2.4797 29 6 5.1700 -4.6388 -1.7867 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2229 -1.5232 1.4433 32 1 -1.4053 -3.6355 1.8356 33 1 -0.5646 -5.7340 0.8700 34 1 1.4651 -5.7491 -0.5125 35 1 3.8074 -6.4676 -0.0832 36 1 3.0579 -5.1620 0.8713 37 1 5.1920 -6.0321 1.8915 38 1 5.2616 -4.2970 1.4976 39 1 6.3352 -6.5528 -0.2568 40 1 7.3241 -5.4847 0.7673 41 1 8.9616 -3.2885 -1.0508 42 1 8.3635 -2.9930 -2.7097 43 1 10.5420 -4.8830 -1.7725 44 1 10.4169 -3.9698 -3.3129 45 1 9.7503 -6.6652 -3.1029 46 1 8.9725 -5.5615 -4.2805 47 1 5.1398 -3.8355 -2.5227 48 1 5.1639 -5.6031 -2.2948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601151237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:17 Heat of formation + Delta-G solvation = -47.067985 kcal Electronic energy + Delta-G solvation = -30663.176167 eV Core-core repulsion = 26682.337234 eV Total energy + Delta-G solvation = -3980.838933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.78540 -39.36607 -37.34824 -36.49425 -36.23723 -33.84949 -33.25256 -31.69619 -30.26408 -29.71687 -28.68763 -27.72852 -25.74184 -24.88161 -23.38956 -22.19867 -22.01592 -20.95770 -20.77223 -19.01724 -18.51535 -17.28339 -16.85004 -16.78234 -16.15392 -15.55124 -15.37780 -15.15603 -14.50655 -14.35423 -14.19553 -13.94232 -13.88497 -13.62492 -13.53084 -13.22373 -12.97774 -12.93230 -12.67971 -12.51935 -12.19340 -12.03465 -11.83396 -11.64983 -11.50793 -11.29947 -11.21406 -11.11951 -10.93710 -10.80237 -10.66466 -10.60743 -10.45400 -9.94750 -9.68736 -9.67449 -9.28480 -8.90313 -8.68041 -7.99694 -7.51287 -7.45070 -6.81748 -4.44496 2.48672 2.50811 2.76880 2.81088 3.04690 3.09319 3.20039 3.72827 3.90400 3.93096 4.14598 4.21901 4.53358 4.59112 4.74070 4.86305 4.92126 5.09998 5.20517 5.25117 5.30786 5.37859 5.40245 5.51270 5.56546 5.64556 5.67985 5.69695 5.84921 5.97697 6.01190 6.05309 6.10084 6.20024 6.25727 6.33329 6.36876 6.55816 6.58902 6.96754 7.05641 7.09261 7.14379 7.22729 7.44958 7.68257 7.86798 7.96858 8.10406 8.11488 8.22931 8.53805 8.77256 8.84183 9.22071 10.10886 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.003588 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.866332 B = 7802.342860 C = 9297.956378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.428 4.428 8 H 0.079 0.921 9 C 0.146 3.854 10 C -0.156 4.156 11 C -0.094 4.094 12 C -0.246 4.246 13 C -0.059 4.059 14 C -0.254 4.254 15 C 0.585 3.415 16 O -0.539 6.539 17 N -0.619 5.619 18 C 0.107 3.893 19 C -0.130 4.130 20 C -0.129 4.129 21 C 0.146 3.854 22 H 0.092 0.908 23 N -0.613 5.613 24 C 0.100 3.900 25 C -0.131 4.131 26 C -0.156 4.156 27 C 0.515 3.485 28 O -0.528 6.528 29 C 0.104 3.896 30 H 0.283 0.717 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.680 -6.383 0.435 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.097 0.903 9 C 0.142 3.858 10 C -0.175 4.175 11 C -0.113 4.113 12 C -0.266 4.266 13 C -0.078 4.078 14 C -0.259 4.259 15 C 0.378 3.622 16 O -0.416 6.416 17 N -0.354 5.354 18 C -0.016 4.016 19 C -0.169 4.169 20 C -0.167 4.167 21 C 0.043 3.957 22 H 0.110 0.890 23 N -0.348 5.348 24 C -0.023 4.023 25 C -0.169 4.169 26 C -0.196 4.196 27 C 0.302 3.698 28 O -0.404 6.404 29 C -0.020 4.020 30 H 0.094 0.906 31 H 0.142 0.858 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.107 0.893 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.077 -6.247 -0.041 17.248 hybrid contribution 0.353 0.763 -0.076 0.844 sum 16.430 -5.484 -0.117 17.322 Atomic orbital electron populations 1.69699 1.07666 1.29507 1.34392 1.25982 0.94808 1.01537 0.92030 0.86212 0.80405 0.80115 0.79472 1.19218 1.20024 1.18464 1.19598 0.96310 0.90258 1.39530 0.90274 1.17376 0.90603 0.90655 0.87132 1.21408 0.98078 0.96822 1.01230 1.20806 0.98093 0.93371 0.99043 1.20279 1.00714 0.96878 1.08702 1.20608 0.95364 0.95125 0.96678 1.19365 1.00296 0.95490 1.10748 1.18588 0.82579 0.77920 0.83150 1.90673 1.80044 1.38317 1.32568 1.48073 1.20861 1.38574 1.27931 1.21818 0.98848 0.93372 0.87586 1.21912 0.94357 1.02721 0.97945 1.21892 0.98463 1.00136 0.96238 1.21395 0.83767 1.00044 0.90491 0.89015 1.48389 1.22714 1.15898 1.47751 1.22126 0.86727 0.91749 1.01724 1.22587 0.96922 0.96376 1.00976 1.22345 0.95405 1.00678 1.01217 1.20894 0.87562 0.82208 0.79102 1.90719 1.52652 1.33351 1.63718 1.21696 0.83870 1.03285 0.93148 0.90606 0.85788 0.89130 0.89101 0.88972 0.92300 0.87836 0.90575 0.91216 0.90370 0.92030 0.90289 0.90793 0.90064 0.89184 0.88233 0.87866 0.89309 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.28 10.82 55.56 0.60 -19.68 16 2 C 0.08 1.91 5.26 -17.30 -0.09 1.82 16 3 Si 0.91 19.14 29.58 -169.99 -5.03 14.11 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 7 C -0.43 -11.57 7.91 -37.81 -0.30 -11.87 16 8 H 0.08 2.17 7.00 -52.49 -0.37 1.80 16 9 C 0.15 3.87 5.58 -106.54 -0.59 3.28 16 10 C -0.16 -3.94 8.66 -38.89 -0.34 -4.28 16 11 C -0.09 -2.13 10.01 -39.60 -0.40 -2.52 16 12 C -0.25 -5.27 10.03 -39.37 -0.39 -5.67 16 13 C -0.06 -1.29 7.56 -39.22 -0.30 -1.59 16 14 C -0.25 -6.23 4.84 -104.37 -0.51 -6.73 16 15 C 0.58 13.87 6.50 -12.52 -0.08 13.79 16 16 O -0.54 -14.59 15.23 5.27 0.08 -14.51 16 17 N -0.62 -11.82 2.97 -174.03 -0.52 -12.34 16 18 C 0.11 1.71 5.30 -3.71 -0.02 1.69 16 19 C -0.13 -1.72 6.08 -26.61 -0.16 -1.89 16 20 C -0.13 -1.66 5.15 -26.68 -0.14 -1.80 16 21 C 0.15 2.03 2.90 -67.81 -0.20 1.83 16 22 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 23 N -0.61 -7.17 2.83 -164.71 -0.47 -7.64 16 24 C 0.10 0.80 7.30 -3.12 -0.02 0.77 16 25 C -0.13 -0.74 7.18 -25.10 -0.18 -0.92 16 26 C -0.16 -1.23 6.86 -26.74 -0.18 -1.41 16 27 C 0.51 6.46 7.40 -10.86 -0.08 6.38 16 28 O -0.53 -8.69 15.08 5.55 0.08 -8.60 16 29 C 0.10 1.80 5.79 -3.71 -0.02 1.78 16 30 H 0.28 6.59 8.29 -40.82 -0.34 6.26 16 31 H 0.12 3.20 6.19 -52.48 -0.33 2.88 16 32 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.09 1.81 7.39 -52.49 -0.39 1.42 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 1.80 5.16 -51.93 -0.27 1.53 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.13 6.85 -51.93 -0.36 0.77 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 1.69 6.99 -51.93 -0.36 1.33 16 48 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -32.10 378.26 -10.58 -42.68 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.04 Total: 7.61 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -4.00 Total: -7.33 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.38 Total: -39.66 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.16 Total: -23.11 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.10 -10.58 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601151237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.388 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds