Wall clock time and date at job start Wed Apr 1 2020 01:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48501 * 109.47317 * 265.38468 * 3 2 1 5 5 H 1.48500 * 109.47235 * 25.38694 * 3 2 1 6 6 H 1.48500 * 109.46986 * 145.38779 * 3 2 1 7 7 C 1.38809 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00330 * 343.43480 * 7 2 1 9 9 N 1.36945 * 119.99937 * 163.43619 * 7 2 1 10 10 C 1.48141 * 127.83862 * 160.87665 * 9 7 2 11 11 C 1.54393 * 104.61589 * 140.41411 * 10 9 7 12 12 H 1.09003 * 117.61410 * 244.78396 * 11 10 9 13 13 C 1.54282 * 104.96098 * 23.86778 * 11 10 9 14 14 H 1.08996 * 121.81661 * 223.07835 * 13 11 10 15 15 C 1.48143 * 127.83426 * 340.87837 * 9 7 2 16 16 C 1.52999 * 61.49929 * 114.21041 * 13 11 10 17 17 H 1.09005 * 117.44110 * 251.43140 * 16 13 11 18 18 N 1.46496 * 117.44147 * 106.69420 * 16 13 11 19 19 C 1.34780 * 120.00134 * 154.99765 * 18 16 13 20 20 O 1.21552 * 119.99855 * 0.02562 * 19 18 16 21 21 C 1.47845 * 119.99989 * 179.97438 * 19 18 16 22 22 C 1.39591 * 120.14587 * 0.02562 * 21 19 18 23 23 C 1.37937 * 119.85447 * 179.97438 * 22 21 19 24 24 C 1.38381 * 120.14334 * 359.97438 * 23 22 21 25 25 C 1.38332 * 120.29243 * 0.04069 * 24 23 22 26 26 C 1.50708 * 119.92585 * 179.97438 * 25 24 23 27 27 H 1.09000 * 110.80137 * 183.62703 * 26 25 24 28 28 C 1.54813 * 110.90788 * 59.99973 * 26 25 24 29 29 C 1.54096 * 104.18758 * 220.92072 * 28 26 25 30 30 O 1.43745 * 107.29182 * 357.96893 * 29 28 26 31 31 C 1.44376 * 106.97864 * 26.51566 * 30 29 28 32 32 C 1.37976 * 120.14698 * 359.69859 * 25 24 23 33 33 H 0.97002 * 119.99885 * 359.97438 * 1 2 3 34 34 H 1.08994 * 110.40776 * 259.19545 * 10 9 7 35 35 H 1.09003 * 110.40887 * 21.63063 * 10 9 7 36 36 H 1.09001 * 110.40962 * 338.36857 * 15 9 7 37 37 H 1.08994 * 110.41268 * 100.80330 * 15 9 7 38 38 H 0.96999 * 119.99971 * 334.99173 * 18 16 13 39 39 H 1.08005 * 120.07126 * 0.02562 * 22 21 19 40 40 H 1.07999 * 119.93048 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.85188 * 180.02562 * 24 23 22 42 42 H 1.09001 * 110.48406 * 339.59860 * 28 26 25 43 43 H 1.09001 * 110.48747 * 102.23927 * 28 26 25 44 44 H 1.08995 * 109.87948 * 117.38872 * 29 28 26 45 45 H 1.08997 * 109.88023 * 238.39353 * 29 28 26 46 46 H 1.08998 * 110.62313 * 201.43625 * 31 30 29 47 47 H 1.09004 * 110.62243 * 78.43869 * 31 30 29 48 48 H 1.08007 * 120.07584 * 180.27750 * 32 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5952 1.9901 -1.3955 5 1 1.4023 2.6788 0.6002 6 1 3.4956 1.4702 0.7953 7 6 2.0102 -1.2022 -0.0005 8 1 1.5038 -2.1182 0.2657 9 7 3.3370 -1.2266 -0.3387 10 6 4.3319 -2.2824 -0.0386 11 6 5.1890 -2.3853 -1.3186 12 1 5.1497 -3.3192 -1.8793 13 6 5.0380 -1.0144 -2.0102 14 1 4.8863 -0.9272 -3.0861 15 6 4.1029 -0.2033 -1.0875 16 6 6.4137 -1.4132 -1.4723 17 1 6.7774 -0.8916 -0.5870 18 7 7.4386 -1.7869 -2.4501 19 6 8.7440 -1.6590 -2.1404 20 8 9.0710 -1.2341 -1.0495 21 6 9.7783 -2.0366 -3.1270 22 6 9.4062 -2.5254 -4.3805 23 6 10.3762 -2.8754 -5.2966 24 6 11.7157 -2.7424 -4.9755 25 6 12.0912 -2.2589 -3.7350 26 6 13.5523 -2.1180 -3.3939 27 1 13.6790 -1.7865 -2.3632 28 6 14.2582 -1.1513 -4.3757 29 6 15.6156 -1.8240 -4.6577 30 8 15.6720 -3.0214 -3.8644 31 6 14.3098 -3.4466 -3.6454 32 6 11.1309 -1.9002 -2.8115 33 1 -0.4850 0.8401 0.0004 34 1 4.9504 -1.9915 0.8105 35 1 3.8319 -3.2302 0.1612 36 1 3.4302 0.4176 -1.6791 37 1 4.6857 0.4123 -0.4023 38 1 7.1777 -2.1263 -3.3205 39 1 8.3611 -2.6285 -4.6327 40 1 10.0897 -3.2541 -6.2666 41 1 12.4712 -3.0174 -5.6966 42 1 13.6820 -1.0543 -5.2959 43 1 14.4047 -0.1759 -3.9117 44 1 15.6917 -2.0762 -5.7153 45 1 16.4272 -1.1526 -4.3776 46 1 14.2459 -4.0961 -2.7724 47 1 13.9180 -3.9503 -4.5292 48 1 11.4254 -1.5186 -1.8449 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960651237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:09 Heat of formation + Delta-G solvation = 13.655091 kcal Electronic energy + Delta-G solvation = -28419.213066 eV Core-core repulsion = 24441.007284 eV Total energy + Delta-G solvation = -3978.205783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.83277 -39.96338 -38.92951 -38.07738 -34.80730 -33.98728 -32.70669 -31.55860 -30.94355 -30.46124 -28.82443 -27.83231 -25.92978 -24.59128 -23.51414 -22.79423 -22.00834 -21.39796 -20.76664 -19.99847 -19.61883 -18.11488 -17.15105 -16.92833 -16.69943 -16.41231 -16.18668 -15.70940 -15.24716 -15.01723 -14.94997 -14.74103 -14.15849 -13.97428 -13.73756 -13.60810 -13.45769 -13.29881 -13.01678 -12.68915 -12.53794 -12.23796 -12.10642 -11.94362 -11.86197 -11.70499 -11.51205 -11.25286 -11.16047 -11.06585 -10.77304 -10.26261 -10.21272 -10.16128 -10.03433 -9.62313 -9.39774 -9.38049 -9.21471 -8.84791 -8.54692 -7.15778 -5.96299 -3.30826 0.44231 0.87788 2.54270 2.85846 3.29858 3.35586 3.45826 3.46410 3.48090 3.99343 4.05736 4.10812 4.32603 4.37549 4.44724 4.50170 4.50566 4.60201 4.69769 4.72932 4.75817 4.83478 5.05503 5.06814 5.09172 5.17820 5.22475 5.26711 5.28300 5.36836 5.44065 5.46660 5.49733 5.57970 5.68829 5.70739 5.87763 5.88466 5.97179 6.06254 6.19893 6.32411 6.39834 6.44641 6.51162 6.53799 6.62088 6.74826 7.35374 7.55636 8.04810 8.28414 8.74240 9.62436 10.16066 11.19821 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.001812 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.446168 B =15447.078467 C =15636.098353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.236 4.236 8 H 0.096 0.904 9 N -0.604 5.604 10 C 0.157 3.843 11 C -0.177 4.177 12 H 0.111 0.889 13 C -0.171 4.171 14 H 0.108 0.892 15 C 0.129 3.871 16 C 0.097 3.903 17 H 0.137 0.863 18 N -0.692 5.692 19 C 0.559 3.441 20 O -0.533 6.533 21 C -0.125 4.125 22 C -0.087 4.087 23 C -0.122 4.122 24 C -0.093 4.093 25 C -0.084 4.084 26 C -0.083 4.083 27 H 0.098 0.902 28 C -0.150 4.150 29 C 0.046 3.954 30 O -0.377 6.377 31 C 0.054 3.946 32 C -0.053 4.053 33 H 0.264 0.736 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.399 0.601 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.065 0.935 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.500 -6.116 -14.326 33.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.718 3.282 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.363 4.363 8 H 0.113 0.887 9 N -0.329 5.329 10 C 0.031 3.969 11 C -0.198 4.198 12 H 0.129 0.871 13 C -0.193 4.193 14 H 0.126 0.874 15 C 0.003 3.997 16 C -0.009 4.009 17 H 0.155 0.845 18 N -0.340 5.340 19 C 0.347 3.653 20 O -0.410 6.410 21 C -0.128 4.128 22 C -0.106 4.106 23 C -0.140 4.140 24 C -0.112 4.112 25 C -0.084 4.084 26 C -0.101 4.101 27 H 0.116 0.884 28 C -0.187 4.187 29 C -0.031 4.031 30 O -0.296 6.296 31 C -0.023 4.023 32 C -0.072 4.072 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.235 0.765 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.083 0.917 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 29.594 -5.810 -13.391 32.998 hybrid contribution -0.114 0.916 -0.803 1.224 sum 29.480 -4.894 -14.194 33.083 Atomic orbital electron populations 1.69770 1.05417 1.26606 1.53936 1.25012 0.95294 0.97507 1.00120 0.86916 0.79375 0.84391 0.77486 1.21403 1.22962 1.19555 1.18666 0.80951 0.95106 1.41576 0.88673 1.45543 1.06161 1.19280 1.61894 1.21135 0.89882 0.93659 0.92237 1.25068 0.99043 0.94094 1.01619 0.87066 1.24315 0.95506 0.99593 0.99863 0.87389 1.21690 0.92784 0.92353 0.92880 1.22547 0.82238 1.01746 0.94370 0.84511 1.45259 1.05049 1.65678 1.18053 1.18221 0.82244 0.77942 0.86912 1.90788 1.81574 1.45412 1.23220 1.19952 0.93978 1.04024 0.94874 1.21363 0.99957 0.96731 0.92540 1.21082 0.92575 1.00554 0.99769 1.21179 0.96311 0.97709 0.95952 1.19529 0.94192 1.00408 0.94303 1.21729 0.90866 0.96372 1.01172 0.88382 1.23086 0.95936 0.99739 0.99970 1.23186 0.97681 0.86750 0.95504 1.88896 1.25740 1.42182 1.72791 1.23706 0.81393 0.95456 1.01696 1.21181 0.90842 0.95674 0.99476 0.92619 0.94795 0.91891 0.90954 0.94490 0.76529 0.85448 0.85141 0.85624 0.90130 0.89939 0.92258 0.89664 0.88477 0.91666 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.11 13.97 55.49 0.78 -27.33 16 2 C 0.02 0.55 5.49 -17.43 -0.10 0.46 16 3 Si 0.89 22.61 24.49 -169.99 -4.16 18.45 16 4 H -0.29 -7.00 6.35 56.52 0.36 -6.64 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.27 -6.78 6.33 56.52 0.36 -6.42 16 7 C -0.24 -6.67 10.78 -15.06 -0.16 -6.84 16 8 H 0.10 2.83 8.06 -52.49 -0.42 2.41 16 9 N -0.60 -14.56 3.19 -168.86 -0.54 -15.10 16 10 C 0.16 3.08 7.06 -2.41 -0.02 3.07 16 11 C -0.18 -2.85 7.23 -86.99 -0.63 -3.48 16 12 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 13 C -0.17 -2.89 6.91 -89.22 -0.62 -3.51 16 14 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 15 C 0.13 2.78 4.48 -2.41 -0.01 2.77 16 16 C 0.10 1.48 6.20 -65.70 -0.41 1.07 16 17 H 0.14 2.35 7.40 -51.93 -0.38 1.97 16 18 N -0.69 -8.45 5.52 -52.59 -0.29 -8.74 16 19 C 0.56 7.45 7.77 -12.33 -0.10 7.36 16 20 O -0.53 -9.08 15.91 5.32 0.08 -9.00 16 21 C -0.13 -1.28 5.87 -104.97 -0.62 -1.90 16 22 C -0.09 -0.67 9.54 -39.19 -0.37 -1.04 16 23 C -0.12 -0.76 10.03 -39.64 -0.40 -1.16 16 24 C -0.09 -0.58 8.19 -39.49 -0.32 -0.90 16 25 C -0.08 -0.62 4.94 -104.68 -0.52 -1.13 16 26 C -0.08 -0.52 3.34 -89.76 -0.30 -0.82 16 27 H 0.10 0.63 7.95 -51.93 -0.41 0.22 16 28 C -0.15 -0.78 6.50 -25.20 -0.16 -0.95 16 29 C 0.05 0.25 7.70 37.73 0.29 0.54 16 30 O -0.38 -3.08 11.52 -35.23 -0.41 -3.48 16 31 C 0.05 0.34 7.10 38.21 0.27 0.61 16 32 C -0.05 -0.50 9.23 -39.19 -0.36 -0.87 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.67 5.06 -51.93 -0.26 1.41 16 37 H 0.04 0.82 6.79 -51.93 -0.35 0.46 16 38 H 0.40 3.68 6.86 -40.82 -0.28 3.40 16 39 H 0.13 0.73 6.41 -52.48 -0.34 0.40 16 40 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.13 0.54 7.22 -52.49 -0.38 0.16 16 42 H 0.08 0.38 7.20 -51.93 -0.37 0.01 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.35 6.69 -51.93 -0.35 0.00 16 48 H 0.14 1.38 7.57 -52.48 -0.40 0.98 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -34.11 381.50 -10.29 -44.41 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.98 Total: 1.76 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -4.53 Total: -6.71 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.05 Total: -51.17 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.32 Total: -12.48 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.16 Total: 18.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.11 -10.29 -44.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960651237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.062 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds