Wall clock time and date at job start Wed Apr 1 2020 01:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48501 * 109.47317 * 265.38468 * 3 2 1 5 5 H 1.48500 * 109.47235 * 25.38694 * 3 2 1 6 6 H 1.48500 * 109.46986 * 145.38779 * 3 2 1 7 7 C 1.38809 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00330 * 343.43480 * 7 2 1 9 9 N 1.36945 * 119.99937 * 163.43619 * 7 2 1 10 10 C 1.48141 * 127.83862 * 160.87665 * 9 7 2 11 11 C 1.54393 * 104.61589 * 140.41411 * 10 9 7 12 12 H 1.09003 * 117.61410 * 244.78396 * 11 10 9 13 13 C 1.54282 * 104.96098 * 23.86778 * 11 10 9 14 14 H 1.08996 * 121.81661 * 223.07835 * 13 11 10 15 15 C 1.48143 * 127.83426 * 340.87837 * 9 7 2 16 16 C 1.52999 * 61.49929 * 114.21041 * 13 11 10 17 17 H 1.09005 * 117.44110 * 251.43140 * 16 13 11 18 18 N 1.46496 * 117.44147 * 106.69420 * 16 13 11 19 19 C 1.34780 * 120.00134 * 154.99765 * 18 16 13 20 20 O 1.21552 * 119.99855 * 0.02562 * 19 18 16 21 21 C 1.47845 * 119.99989 * 179.97438 * 19 18 16 22 22 C 1.39591 * 120.14587 * 0.02562 * 21 19 18 23 23 C 1.37937 * 119.85447 * 179.97438 * 22 21 19 24 24 C 1.38381 * 120.14334 * 359.97438 * 23 22 21 25 25 C 1.38332 * 120.29243 * 0.04069 * 24 23 22 26 26 C 1.50708 * 119.92585 * 179.97438 * 25 24 23 27 27 H 1.09000 * 110.80137 * 183.62703 * 26 25 24 28 28 C 1.54813 * 110.90788 * 59.99973 * 26 25 24 29 29 C 1.54096 * 104.18758 * 220.92072 * 28 26 25 30 30 O 1.43745 * 107.29182 * 357.96893 * 29 28 26 31 31 C 1.44376 * 106.97864 * 26.51566 * 30 29 28 32 32 C 1.37976 * 120.14698 * 359.69859 * 25 24 23 33 33 H 0.97002 * 119.99885 * 359.97438 * 1 2 3 34 34 H 1.08994 * 110.40776 * 259.19545 * 10 9 7 35 35 H 1.09003 * 110.40887 * 21.63063 * 10 9 7 36 36 H 1.09001 * 110.40962 * 338.36857 * 15 9 7 37 37 H 1.08994 * 110.41268 * 100.80330 * 15 9 7 38 38 H 0.96999 * 119.99971 * 334.99173 * 18 16 13 39 39 H 1.08005 * 120.07126 * 0.02562 * 22 21 19 40 40 H 1.07999 * 119.93048 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.85188 * 180.02562 * 24 23 22 42 42 H 1.09001 * 110.48406 * 339.59860 * 28 26 25 43 43 H 1.09001 * 110.48747 * 102.23927 * 28 26 25 44 44 H 1.08995 * 109.87948 * 117.38872 * 29 28 26 45 45 H 1.08997 * 109.88023 * 238.39353 * 29 28 26 46 46 H 1.08998 * 110.62313 * 201.43625 * 31 30 29 47 47 H 1.09004 * 110.62243 * 78.43869 * 31 30 29 48 48 H 1.08007 * 120.07584 * 180.27750 * 32 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5952 1.9901 -1.3955 5 1 1.4023 2.6788 0.6002 6 1 3.4956 1.4702 0.7953 7 6 2.0102 -1.2022 -0.0005 8 1 1.5038 -2.1182 0.2657 9 7 3.3370 -1.2266 -0.3387 10 6 4.3319 -2.2824 -0.0386 11 6 5.1890 -2.3853 -1.3186 12 1 5.1497 -3.3192 -1.8793 13 6 5.0380 -1.0144 -2.0102 14 1 4.8863 -0.9272 -3.0861 15 6 4.1029 -0.2033 -1.0875 16 6 6.4137 -1.4132 -1.4723 17 1 6.7774 -0.8916 -0.5870 18 7 7.4386 -1.7869 -2.4501 19 6 8.7440 -1.6590 -2.1404 20 8 9.0710 -1.2341 -1.0495 21 6 9.7783 -2.0366 -3.1270 22 6 9.4062 -2.5254 -4.3805 23 6 10.3762 -2.8754 -5.2966 24 6 11.7157 -2.7424 -4.9755 25 6 12.0912 -2.2589 -3.7350 26 6 13.5523 -2.1180 -3.3939 27 1 13.6790 -1.7865 -2.3632 28 6 14.2582 -1.1513 -4.3757 29 6 15.6156 -1.8240 -4.6577 30 8 15.6720 -3.0214 -3.8644 31 6 14.3098 -3.4466 -3.6454 32 6 11.1309 -1.9002 -2.8115 33 1 -0.4850 0.8401 0.0004 34 1 4.9504 -1.9915 0.8105 35 1 3.8319 -3.2302 0.1612 36 1 3.4302 0.4176 -1.6791 37 1 4.6857 0.4123 -0.4023 38 1 7.1777 -2.1263 -3.3205 39 1 8.3611 -2.6285 -4.6327 40 1 10.0897 -3.2541 -6.2666 41 1 12.4712 -3.0174 -5.6966 42 1 13.6820 -1.0543 -5.2959 43 1 14.4047 -0.1759 -3.9117 44 1 15.6917 -2.0762 -5.7153 45 1 16.4272 -1.1526 -4.3776 46 1 14.2459 -4.0961 -2.7724 47 1 13.9180 -3.9503 -4.5292 48 1 11.4254 -1.5186 -1.8449 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960651237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:08 Heat of formation + Delta-G solvation = -9.002681 kcal Electronic energy + Delta-G solvation = -28420.195581 eV Core-core repulsion = 24441.007284 eV Total energy + Delta-G solvation = -3979.188298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58718 -40.83742 -40.05532 -38.94517 -36.22876 -34.82511 -34.20278 -32.73920 -31.97963 -31.13603 -29.45094 -29.35535 -27.66971 -25.44088 -24.23371 -23.31908 -23.19760 -22.32819 -22.16207 -21.10469 -20.83873 -19.01336 -18.77926 -17.95353 -17.53120 -17.21622 -17.04265 -16.72049 -16.21146 -16.05517 -15.79515 -15.55308 -15.50157 -15.24900 -14.86757 -14.67032 -14.42952 -14.31960 -14.00284 -13.88054 -13.77329 -13.37242 -13.20744 -13.11967 -12.69377 -12.65417 -12.45511 -12.41809 -12.29686 -12.12531 -12.01986 -11.79200 -11.60381 -11.55052 -11.20862 -10.96017 -10.85313 -10.66985 -10.05621 -9.79967 -9.66982 -9.17475 -8.19470 -5.50263 -0.21411 0.32483 1.25363 1.37413 1.44792 1.68052 1.81520 2.37088 2.59656 2.83085 2.97794 3.01985 3.23120 3.48256 3.58157 3.65840 3.69446 3.71534 3.91205 3.94530 3.97033 4.08082 4.14898 4.20450 4.23562 4.29230 4.31876 4.32742 4.52002 4.63440 4.69049 4.72101 4.76958 4.81593 4.85294 4.89185 4.93382 4.98844 5.02917 5.11062 5.11879 5.22263 5.28524 5.38597 5.41325 5.51301 5.56130 5.86390 5.90506 6.07845 6.41173 6.64100 7.07629 7.45323 8.09461 9.00382 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.001812 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.446168 B =15447.078467 C =15636.098353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.039 4.039 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.308 1.308 6 H -0.268 1.268 7 C -0.226 4.226 8 H 0.066 0.934 9 N -0.626 5.626 10 C 0.149 3.851 11 C -0.165 4.165 12 H 0.142 0.858 13 C -0.167 4.167 14 H 0.136 0.864 15 C 0.121 3.879 16 C 0.117 3.883 17 H 0.116 0.884 18 N -0.677 5.677 19 C 0.558 3.442 20 O -0.580 6.580 21 C -0.146 4.146 22 C -0.084 4.084 23 C -0.117 4.117 24 C -0.085 4.085 25 C -0.082 4.082 26 C -0.083 4.083 27 H 0.087 0.913 28 C -0.145 4.145 29 C 0.042 3.958 30 O -0.403 6.403 31 C 0.053 3.947 32 C -0.070 4.070 33 H 0.263 0.737 34 H 0.034 0.966 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.032 0.968 38 H 0.418 0.582 39 H 0.149 0.851 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.029 -6.844 -17.708 37.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.233 4.233 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.236 1.236 6 H -0.193 1.193 7 C -0.355 4.355 8 H 0.084 0.916 9 N -0.351 5.351 10 C 0.024 3.976 11 C -0.186 4.186 12 H 0.159 0.841 13 C -0.188 4.188 14 H 0.154 0.846 15 C -0.004 4.004 16 C 0.009 3.991 17 H 0.134 0.866 18 N -0.327 5.327 19 C 0.348 3.652 20 O -0.461 6.461 21 C -0.149 4.149 22 C -0.103 4.103 23 C -0.134 4.134 24 C -0.103 4.103 25 C -0.083 4.083 26 C -0.102 4.102 27 H 0.105 0.895 28 C -0.183 4.183 29 C -0.035 4.035 30 O -0.322 6.322 31 C -0.023 4.023 32 C -0.090 4.090 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.257 0.743 39 H 0.167 0.833 40 H 0.180 0.820 41 H 0.169 0.831 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.113 0.887 47 H 0.098 0.902 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 32.174 -6.565 -16.822 36.895 hybrid contribution -0.794 1.035 0.253 1.328 sum 31.380 -5.530 -16.569 35.914 Atomic orbital electron populations 1.69894 1.06964 1.27237 1.56532 1.25636 0.95941 1.00693 1.01012 0.85943 0.77876 0.80238 0.78310 1.19483 1.23612 1.19270 1.18605 0.82869 0.94028 1.39949 0.91602 1.45649 1.05538 1.21066 1.62834 1.21297 0.89554 0.92518 0.94233 1.24963 0.98887 0.95112 0.99603 0.84085 1.24136 0.95676 0.98706 1.00316 0.84596 1.21687 0.93077 0.92328 0.93270 1.22128 0.82235 1.00531 0.94190 0.86600 1.45044 1.04125 1.65300 1.18224 1.18757 0.82806 0.76787 0.86842 1.90765 1.82258 1.47628 1.25405 1.19759 0.93049 1.06559 0.95502 1.21614 1.01579 0.95678 0.91383 1.21466 0.92088 0.99295 1.00590 1.21525 0.97248 0.95980 0.95514 1.19573 0.94010 1.00202 0.94472 1.21693 0.90554 0.96892 1.01032 0.89465 1.23073 0.95761 0.99391 1.00040 1.23330 0.97989 0.86144 0.95992 1.88869 1.26717 1.43206 1.73425 1.23774 0.80817 0.95372 1.02311 1.21160 0.91435 0.96852 0.99509 0.92791 0.94790 0.91664 0.92466 0.95008 0.74333 0.83323 0.81999 0.83066 0.89040 0.89892 0.90849 0.89192 0.88679 0.90222 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.75 13.97 21.65 0.30 -60.44 16 2 C -0.04 -2.29 5.49 84.86 0.47 -1.83 16 3 Si 0.95 47.47 24.49 68.60 1.68 49.15 16 4 H -0.27 -12.54 6.35 99.48 0.63 -11.90 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.27 -13.10 6.33 99.48 0.63 -12.47 16 7 C -0.23 -13.07 10.78 84.03 0.91 -12.16 16 8 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 9 N -0.63 -30.07 3.19 -688.16 -2.20 -32.26 16 10 C 0.15 5.74 7.06 86.54 0.61 6.35 16 11 C -0.16 -4.89 7.23 -8.44 -0.06 -4.95 16 12 H 0.14 3.42 8.14 -2.39 -0.02 3.40 16 13 C -0.17 -5.20 6.91 -9.89 -0.07 -5.27 16 14 H 0.14 3.51 8.14 -2.39 -0.02 3.49 16 15 C 0.12 5.11 4.48 86.54 0.39 5.50 16 16 C 0.12 3.31 6.20 46.44 0.29 3.60 16 17 H 0.12 3.91 7.40 -2.38 -0.02 3.89 16 18 N -0.68 -14.76 5.52 -438.57 -2.42 -17.18 16 19 C 0.56 14.25 7.77 86.79 0.67 14.92 16 20 O -0.58 -20.05 15.91 -3.88 -0.06 -20.11 16 21 C -0.15 -2.74 5.87 -20.09 -0.12 -2.86 16 22 C -0.08 -0.97 9.54 22.53 0.21 -0.76 16 23 C -0.12 -0.91 10.03 22.23 0.22 -0.69 16 24 C -0.08 -0.71 8.19 22.33 0.18 -0.53 16 25 C -0.08 -1.04 4.94 -19.90 -0.10 -1.14 16 26 C -0.08 -0.93 3.34 -10.24 -0.03 -0.97 16 27 H 0.09 1.15 7.95 -2.39 -0.02 1.13 16 28 C -0.15 -1.22 6.50 31.58 0.21 -1.02 16 29 C 0.04 0.38 7.70 72.35 0.56 0.94 16 30 O -0.40 -6.01 11.52 -148.98 -1.72 -7.72 16 31 C 0.05 0.59 7.10 72.66 0.52 1.11 16 32 C -0.07 -1.30 9.23 22.53 0.21 -1.09 16 33 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.57 5.06 -2.39 -0.01 2.56 16 37 H 0.03 1.38 6.79 -2.39 -0.02 1.36 16 38 H 0.42 6.00 6.86 -92.71 -0.64 5.36 16 39 H 0.15 1.00 6.41 -2.91 -0.02 0.98 16 40 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 41 H 0.15 0.52 7.22 -2.91 -0.02 0.50 16 42 H 0.09 0.57 7.20 -2.39 -0.02 0.55 16 43 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.08 0.62 6.69 -2.38 -0.02 0.61 16 48 H 0.12 2.54 7.57 -2.91 -0.02 2.52 16 Total: -1.00 -77.20 381.50 0.85 -76.35 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.20 Total: 13.08 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.06 Total: -0.86 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -4.32 Total: -109.89 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -1.78 Total: -27.83 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.68 Total: 49.15 kcal Total: -77.20 0.85 -76.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960651237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.349 kcal (2) G-P(sol) polarization free energy of solvation -77.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds