Wall clock time and date at job start Wed Apr 1 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99838 * 2 1 4 4 H 1.48505 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47111 * 299.99790 * 3 2 1 6 6 H 1.48504 * 109.47120 * 60.00339 * 3 2 1 7 7 C 1.38813 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.46771 * 125.36625 * 359.97438 * 9 7 2 11 11 C 1.53912 * 107.62953 * 178.78884 * 10 9 7 12 12 H 1.08995 * 109.52443 * 100.76952 * 11 10 9 13 13 O 1.40853 * 110.30189 * 221.41406 * 11 10 9 14 14 C 1.41316 * 118.31302 * 68.00297 * 13 11 10 15 15 C 1.51956 * 111.60730 * 56.89689 * 14 13 11 16 16 N 1.44959 * 111.93854 * 319.69605 * 15 14 13 17 17 C 1.34785 * 117.34036 * 203.73125 * 16 15 14 18 18 O 1.21551 * 119.99644 * 6.34248 * 17 16 15 19 19 C 1.47839 * 120.00297 * 186.34001 * 17 16 15 20 20 C 1.39604 * 120.14459 * 29.65606 * 19 17 16 21 21 C 1.37929 * 119.85506 * 180.25480 * 20 19 17 22 22 C 1.38390 * 120.14389 * 359.76524 * 21 20 19 23 23 C 1.38333 * 120.29224 * 359.97438 * 22 21 20 24 24 C 1.50703 * 119.92776 * 180.02562 * 23 22 21 25 25 C 1.52995 * 117.49794 * 8.60544 * 24 23 22 26 26 C 1.52993 * 60.00045 * 252.50815 * 25 24 23 27 27 C 1.37986 * 120.14524 * 0.02562 * 23 22 21 28 28 C 1.44542 * 125.32542 * 24.01468 * 16 15 14 29 29 H 1.09001 * 109.64784 * 106.18778 * 28 16 15 30 30 C 1.46873 * 125.35817 * 179.97438 * 9 7 2 31 31 H 0.96999 * 120.00347 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.82202 * 59.26279 * 10 9 7 33 33 H 1.09000 * 109.82618 * 298.31076 * 10 9 7 34 34 H 1.09003 * 109.05001 * 296.34948 * 14 13 11 35 35 H 1.09002 * 109.05673 * 177.44800 * 14 13 11 36 36 H 1.09001 * 108.99083 * 199.06124 * 15 14 13 37 37 H 1.08997 * 108.99106 * 80.32743 * 15 14 13 38 38 H 1.08003 * 120.07332 * 359.97438 * 20 19 17 39 39 H 1.08000 * 119.92868 * 179.74586 * 21 20 19 40 40 H 1.08002 * 119.85312 * 180.02562 * 22 21 20 41 41 H 1.09002 * 115.54773 * 154.30665 * 24 23 22 42 42 H 1.09004 * 117.49964 * 359.97438 * 25 24 23 43 43 H 1.08994 * 117.50290 * 145.01812 * 25 24 23 44 44 H 1.08999 * 117.50143 * 252.51079 * 26 25 24 45 45 H 1.09001 * 117.52183 * 107.47971 * 26 25 24 46 46 H 1.07997 * 120.07100 * 180.02562 * 27 23 22 47 47 H 1.08995 * 110.07229 * 317.06072 * 30 9 7 48 48 H 1.09007 * 110.06849 * 78.52914 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1358 -2.5252 0.0005 11 6 -0.4628 -4.0289 -0.0309 12 1 -0.7250 -4.3657 0.9720 13 8 -1.5372 -4.2771 -0.9073 14 6 -1.3310 -4.0837 -2.2919 15 6 -0.1737 -4.9224 -2.8079 16 7 0.9367 -4.9446 -1.8762 17 6 2.1596 -5.2101 -2.3768 18 8 2.3170 -5.3046 -3.5784 19 6 3.3096 -5.3862 -1.4646 20 6 3.1126 -5.8887 -0.1771 21 6 4.1890 -6.0456 0.6709 22 6 5.4629 -5.7107 0.2462 23 6 5.6657 -5.2173 -1.0301 24 6 7.0564 -4.8557 -1.4843 25 6 8.2208 -5.2423 -0.5702 26 6 7.7995 -3.7767 -0.6941 27 6 4.5974 -5.0555 -1.8884 28 6 0.8384 -4.7110 -0.4532 29 1 0.9522 -5.6539 0.0817 30 6 1.9378 -3.7230 -0.0016 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5535 -2.0376 -0.8803 33 1 -0.5486 -2.0760 0.9038 34 1 -1.1174 -3.0308 -2.4762 35 1 -2.2383 -4.3606 -2.8289 36 1 0.1681 -4.5095 -3.7571 37 1 -0.5201 -5.9428 -2.9710 38 1 2.1189 -6.1497 0.1558 39 1 4.0374 -6.4304 1.6686 40 1 6.3024 -5.8358 0.9139 41 1 7.2254 -4.8978 -2.5603 42 1 7.9810 -5.7577 0.3598 43 1 9.1562 -5.5388 -1.0447 44 1 8.4576 -3.1091 -1.2501 45 1 7.2822 -3.3280 0.1540 46 1 4.7572 -4.6706 -2.8847 47 1 2.7745 -3.7503 -0.6997 48 1 2.2796 -3.9786 1.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083286331.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:03 Heat of formation + Delta-G solvation = 52.354711 kcal Electronic energy + Delta-G solvation = -31673.479386 eV Core-core repulsion = 27696.951744 eV Total energy + Delta-G solvation = -3976.527641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.36163 -39.40193 -38.29598 -36.91326 -35.87753 -34.70186 -32.52831 -31.19555 -30.90910 -29.89698 -28.00115 -27.27403 -25.01692 -24.07465 -23.64384 -22.80980 -22.36364 -21.43090 -20.70232 -19.53432 -18.88010 -17.59741 -17.18482 -16.61249 -16.36586 -15.86335 -15.74322 -15.29665 -14.84527 -14.81958 -14.46272 -14.30329 -14.04608 -13.85951 -13.56148 -13.48786 -12.92386 -12.81285 -12.49398 -12.32364 -12.14294 -11.90389 -11.81738 -11.49811 -11.36757 -11.11798 -10.99060 -10.95599 -10.72897 -10.69729 -10.51913 -10.43421 -10.20227 -10.09762 -9.85531 -9.61720 -9.15786 -8.78157 -8.63520 -8.42019 -8.18035 -6.90340 -5.78100 -3.12465 1.02652 1.43189 2.87784 3.10100 3.35986 3.41980 3.44121 3.66063 4.03068 4.11221 4.40834 4.44439 4.55174 4.78543 4.81666 4.84901 4.87743 4.95870 5.05124 5.16876 5.24351 5.31605 5.38317 5.46990 5.51144 5.52366 5.57694 5.63163 5.70603 5.73156 5.83417 5.91610 5.93333 5.99802 6.02821 6.03982 6.09770 6.21438 6.37064 6.40138 6.47586 6.53408 6.60788 6.80131 6.96591 7.35107 7.42158 7.49806 7.67828 7.85333 8.16887 8.32618 9.13821 9.73808 10.35316 11.32805 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.008667 B = 0.005301 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.919508 B = 5281.058313 C = 7410.993558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.597 5.597 10 C 0.151 3.849 11 C 0.068 3.932 12 H 0.111 0.889 13 O -0.370 6.370 14 C 0.059 3.941 15 C 0.086 3.914 16 N -0.579 5.579 17 C 0.559 3.441 18 O -0.541 6.541 19 C -0.108 4.108 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.104 4.104 23 C -0.059 4.059 24 C -0.116 4.116 25 C -0.178 4.178 26 C -0.168 4.168 27 C -0.063 4.063 28 C 0.086 3.914 29 H 0.088 0.912 30 C 0.117 3.883 31 H 0.253 0.747 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.146 0.854 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.129 0.871 47 H 0.061 0.939 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.196 -13.575 0.328 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.324 5.324 10 C 0.026 3.974 11 C 0.009 3.991 12 H 0.129 0.871 13 O -0.287 6.287 14 C -0.019 4.019 15 C -0.036 4.036 16 N -0.311 5.311 17 C 0.348 3.652 18 O -0.419 6.419 19 C -0.112 4.112 20 C -0.125 4.125 21 C -0.139 4.139 22 C -0.123 4.123 23 C -0.059 4.059 24 C -0.134 4.134 25 C -0.214 4.214 26 C -0.205 4.205 27 C -0.082 4.082 28 C -0.018 4.018 29 H 0.105 0.895 30 C -0.009 4.009 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.163 0.837 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.147 0.853 47 H 0.079 0.921 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.969 -13.424 -0.228 15.127 hybrid contribution 0.628 1.148 -0.041 1.309 sum 7.596 -12.276 -0.269 14.439 Atomic orbital electron populations 1.69952 1.04846 1.25067 1.56913 1.24792 0.95727 0.97694 1.01963 0.86051 0.78804 0.83692 0.77288 1.20442 1.21710 1.21643 1.19050 0.90428 0.82062 1.43919 0.90356 1.44216 1.01174 0.99917 1.87104 1.21728 0.84994 0.88200 1.02514 1.22981 0.84739 0.98534 0.92817 0.87107 1.86861 1.36968 1.88970 1.15920 1.22266 0.97405 0.99821 0.82362 1.21457 0.87573 1.00880 0.93728 1.46503 1.07251 1.69591 1.07782 1.18401 0.82876 0.76175 0.87709 1.90723 1.84466 1.51494 1.15231 1.19646 0.93612 1.03203 0.94691 1.22117 1.00525 0.97475 0.92344 1.21000 0.92231 1.00985 0.99693 1.21131 0.97255 0.98446 0.95428 1.18967 0.93182 0.99693 0.94026 1.20995 0.89502 1.04784 0.98096 1.23053 0.98276 0.98477 1.01643 1.23046 1.02911 0.91650 1.02894 1.20887 0.90303 0.97329 0.99701 1.22484 0.99773 0.98837 0.80734 0.89454 1.22615 0.94139 0.85641 0.98499 0.93686 0.92411 0.92807 0.92024 0.87866 0.89185 0.91937 0.83722 0.85512 0.85918 0.86930 0.88401 0.88590 0.88465 0.88280 0.85269 0.92113 0.94674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 10.26 55.49 0.57 -25.99 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.21 10.25 -15.06 -0.15 -6.37 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -14.73 3.39 -171.20 -0.58 -15.31 16 10 C 0.15 3.54 5.02 -3.42 -0.02 3.53 16 11 C 0.07 1.25 3.82 -26.32 -0.10 1.15 16 12 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 13 O -0.37 -6.55 10.24 -34.45 -0.35 -6.90 16 14 C 0.06 0.94 6.72 36.63 0.25 1.18 16 15 C 0.09 1.39 6.22 -5.40 -0.03 1.36 16 16 N -0.58 -10.18 3.08 -169.62 -0.52 -10.71 16 17 C 0.56 10.35 6.84 -12.33 -0.08 10.26 16 18 O -0.54 -11.18 16.05 5.32 0.09 -11.10 16 19 C -0.11 -1.77 3.32 -104.97 -0.35 -2.11 16 20 C -0.11 -1.47 6.10 -39.19 -0.24 -1.71 16 21 C -0.12 -1.45 10.02 -39.64 -0.40 -1.85 16 22 C -0.10 -1.26 9.30 -39.49 -0.37 -1.62 16 23 C -0.06 -0.78 5.61 -104.68 -0.59 -1.37 16 24 C -0.12 -1.30 6.04 -91.78 -0.55 -1.85 16 25 C -0.18 -1.60 9.86 -26.74 -0.26 -1.86 16 26 C -0.17 -1.75 10.16 -26.74 -0.27 -2.02 16 27 C -0.06 -0.99 9.18 -39.18 -0.36 -1.35 16 28 C 0.09 1.47 2.81 -68.23 -0.19 1.28 16 29 H 0.09 1.23 5.13 -51.93 -0.27 0.96 16 30 C 0.12 2.32 4.72 -3.02 -0.01 2.31 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.06 1.54 5.74 -51.93 -0.30 1.24 16 33 H 0.05 1.40 7.49 -51.93 -0.39 1.01 16 34 H 0.06 1.14 6.81 -51.93 -0.35 0.79 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.09 1.51 7.26 -51.93 -0.38 1.14 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.15 1.82 4.25 -52.48 -0.22 1.60 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.19 6.00 -52.49 -0.32 0.88 16 41 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.10 0.81 6.17 -51.93 -0.32 0.49 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.13 2.05 7.92 -52.49 -0.42 1.64 16 47 H 0.06 1.27 4.32 -51.93 -0.22 1.05 16 48 H 0.04 0.67 7.48 -51.93 -0.39 0.28 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -32.36 365.12 -10.65 -43.02 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.50 Total: 5.76 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -3.83 Total: -1.31 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.53 Total: -52.01 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.27 Total: -18.00 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.36 -10.65 -43.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083286331.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.371 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds