Wall clock time and date at job start Wed Apr 1 2020 01:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00399 * 2 1 4 4 H 1.48504 * 109.47243 * 240.00097 * 3 2 1 5 5 H 1.48504 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47379 * 119.99625 * 3 2 1 7 7 C 1.38817 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00246 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.49633 * 125.94157 * 179.97438 * 9 7 2 11 11 C 1.51668 * 102.80325 * 155.13363 * 10 9 7 12 12 H 1.08998 * 109.81736 * 287.50838 * 11 10 9 13 13 C 1.55791 * 99.18973 * 42.58256 * 11 10 9 14 14 H 1.09004 * 103.90200 * 62.89265 * 13 11 10 15 15 C 1.49068 * 102.69742 * 313.92597 * 13 11 10 16 16 C 1.49803 * 107.34527 * 174.79437 * 13 11 10 17 17 H 1.08997 * 114.78223 * 154.18308 * 16 13 11 18 18 C 1.55180 * 108.10721 * 25.39969 * 16 13 11 19 19 C 1.53838 * 108.77730 * 288.13216 * 18 16 13 20 20 C 1.51682 * 122.43689 * 156.51520 * 11 10 9 21 21 H 1.09003 * 113.11733 * 42.71301 * 20 11 10 22 22 C 1.54673 * 108.79504 * 275.17021 * 20 11 10 23 23 N 1.48937 * 106.56591 * 288.28723 * 22 20 11 24 24 C 1.34781 * 123.93782 * 216.84338 * 23 22 20 25 25 O 1.21589 * 120.00117 * 5.19553 * 24 23 22 26 26 C 1.47539 * 119.99900 * 185.19691 * 24 23 22 27 27 C 1.39712 * 120.18936 * 308.87488 * 26 24 23 28 28 C 1.37794 * 119.90694 * 180.20943 * 27 26 24 29 29 C 1.38546 * 120.29426 * 359.51644 * 28 27 26 30 30 C 1.38054 * 120.39772 * 0.25169 * 29 28 27 31 31 C 1.38712 * 120.07901 * 359.97438 * 30 29 28 32 32 O 1.35659 * 120.14936 * 180.02562 * 31 30 29 33 33 H 0.97000 * 119.99816 * 359.97438 * 1 2 3 34 34 H 1.09001 * 110.74530 * 36.80588 * 10 9 7 35 35 H 1.09010 * 110.74817 * 273.46151 * 10 9 7 36 36 H 1.08999 * 110.14035 * 272.66983 * 15 13 11 37 37 H 1.09004 * 110.54466 * 150.31211 * 15 13 11 38 38 H 1.08997 * 109.58748 * 47.92184 * 18 16 13 39 39 H 1.08999 * 109.58237 * 168.20483 * 18 16 13 40 40 H 1.08998 * 109.89847 * 155.03782 * 19 18 16 41 41 H 1.09004 * 109.89876 * 276.09350 * 19 18 16 42 42 H 1.09003 * 110.05153 * 168.97499 * 22 20 11 43 43 H 1.08999 * 109.90163 * 47.51594 * 22 20 11 44 44 H 1.07999 * 120.04831 * 359.97438 * 27 26 24 45 45 H 1.07989 * 119.84923 * 179.79043 * 28 27 26 46 46 H 1.08004 * 119.80177 * 180.23480 * 29 28 27 47 47 H 1.07992 * 119.96187 * 180.02562 * 30 29 28 48 48 H 0.96698 * 114.00201 * 89.99129 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 1.9355 -3.7545 0.0017 11 6 0.8477 -4.6081 0.6249 12 1 0.7796 -4.3986 1.6924 13 6 -0.3890 -4.0114 -0.1110 14 1 -0.2050 -4.2408 -1.1607 15 6 -0.1609 -2.5427 0.0027 16 6 -1.5811 -4.8279 0.2847 17 1 -2.5346 -4.3035 0.2239 18 6 -1.2915 -5.4641 1.6701 19 6 -0.2410 -6.5743 1.4954 20 6 0.7501 -6.1030 0.3870 21 1 1.7158 -6.6068 0.4282 22 6 -0.0274 -6.3487 -0.9274 23 7 -1.4504 -6.0087 -0.6489 24 6 -2.4993 -6.6798 -1.1649 25 8 -2.3132 -7.6811 -1.8290 26 6 -3.8732 -6.1993 -0.9238 27 6 -4.3010 -5.9172 0.3760 28 6 -5.5868 -5.4729 0.5949 29 6 -6.4554 -5.2947 -0.4697 30 6 -6.0442 -5.5649 -1.7595 31 6 -4.7548 -6.0174 -1.9978 32 8 -4.3491 -6.2830 -3.2648 33 1 -0.4850 0.8401 0.0004 34 1 2.8386 -3.7740 0.6117 35 1 2.1483 -4.0825 -1.0158 36 1 -0.5813 -2.1688 0.9362 37 1 -0.5981 -2.0206 -0.8484 38 1 -0.9086 -4.7023 2.3492 39 1 -2.2098 -5.8878 2.0767 40 1 0.2954 -6.7282 2.4317 41 1 -0.7276 -7.5007 1.1901 42 1 0.0565 -7.3950 -1.2212 43 1 0.3635 -5.7052 -1.7155 44 1 -3.6260 -6.0510 1.2084 45 1 -5.9175 -5.2585 1.6003 46 1 -7.4603 -4.9424 -0.2893 47 1 -6.7270 -5.4231 -2.5841 48 1 -3.9547 -5.5255 -3.7184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089779396.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:02 Heat of formation + Delta-G solvation = 32.595438 kcal Electronic energy + Delta-G solvation = -31525.402283 eV Core-core repulsion = 27548.017815 eV Total energy + Delta-G solvation = -3977.384468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.72705 -40.01217 -38.06821 -36.81599 -35.84922 -33.04213 -32.03363 -31.60082 -30.84003 -29.94261 -29.18996 -27.22234 -25.86012 -24.58024 -23.11691 -22.73102 -22.19558 -21.32942 -20.20929 -19.61080 -18.46659 -17.44970 -17.13304 -16.79376 -16.49050 -16.10257 -15.83683 -15.39595 -15.25285 -14.63884 -14.55631 -14.06271 -13.77913 -13.65436 -13.35774 -13.26897 -12.76877 -12.59205 -12.44231 -12.33477 -12.03896 -12.00190 -11.78054 -11.70298 -11.48070 -11.13633 -11.07281 -11.00771 -10.85632 -10.70370 -10.55073 -10.22632 -10.02151 -9.78725 -9.62921 -9.53159 -9.45165 -9.10652 -8.84205 -8.65128 -8.38080 -6.89384 -5.74313 -3.07124 0.82071 1.08150 2.76413 2.93170 3.38731 3.43259 3.44043 3.48600 4.03827 4.30199 4.43071 4.55430 4.66172 4.73136 4.78070 4.90224 5.08694 5.09592 5.16819 5.19420 5.31796 5.34354 5.44643 5.46213 5.53190 5.59924 5.66105 5.69696 5.80962 5.93366 5.98646 6.03191 6.06232 6.07475 6.14538 6.22523 6.22761 6.26840 6.33918 6.34817 6.50119 6.55381 6.63258 6.82203 6.92512 7.46202 7.50359 7.51723 7.58893 7.74718 8.14220 8.26689 9.13954 9.75413 10.43111 11.38358 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.003693 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.368597 B = 7580.878233 C = 8600.328464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.143 3.857 11 C -0.111 4.111 12 H 0.081 0.919 13 C -0.151 4.151 14 H 0.068 0.932 15 C 0.206 3.794 16 C 0.166 3.834 17 H 0.111 0.889 18 C -0.133 4.133 19 C -0.108 4.108 20 C -0.089 4.089 21 H 0.097 0.903 22 C 0.120 3.880 23 N -0.614 5.614 24 C 0.568 3.432 25 O -0.534 6.534 26 C -0.147 4.147 27 C -0.080 4.080 28 C -0.133 4.133 29 C -0.087 4.087 30 C -0.151 4.151 31 C 0.152 3.848 32 O -0.487 6.487 33 H 0.252 0.748 34 H 0.043 0.957 35 H 0.021 0.979 36 H 0.035 0.965 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.137 0.863 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.133 0.867 48 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 -11.951 2.104 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.337 5.337 10 C 0.017 3.983 11 C -0.130 4.130 12 H 0.099 0.901 13 C -0.171 4.171 14 H 0.086 0.914 15 C 0.081 3.919 16 C 0.064 3.936 17 H 0.128 0.872 18 C -0.171 4.171 19 C -0.145 4.145 20 C -0.108 4.108 21 H 0.115 0.885 22 C -0.001 4.001 23 N -0.349 5.349 24 C 0.356 3.644 25 O -0.412 6.412 26 C -0.151 4.151 27 C -0.098 4.098 28 C -0.151 4.151 29 C -0.105 4.105 30 C -0.170 4.170 31 C 0.107 3.893 32 O -0.297 6.297 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.148 0.852 47 H 0.151 0.849 48 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.939 -12.835 1.811 16.334 hybrid contribution 0.580 1.507 -0.149 1.621 sum -9.359 -11.329 1.663 14.788 Atomic orbital electron populations 1.69919 1.04852 1.25116 1.57271 1.24753 0.95703 0.97507 1.02451 0.86216 0.78472 0.83288 0.77889 1.21226 1.21614 1.21220 1.19027 0.90372 0.82358 1.43599 0.90468 1.45583 1.00774 0.99531 1.87791 1.21121 0.94239 0.86112 0.96784 1.22129 0.97475 0.92384 1.01024 0.90121 1.21916 0.93850 0.99769 1.01547 0.91410 1.20018 0.84517 0.86387 1.00939 1.21839 0.99255 0.85008 0.87455 0.87163 1.22661 0.98798 0.98743 0.96851 1.22245 0.96307 0.97680 0.98317 1.22060 0.97926 0.96444 0.94361 0.88463 1.22201 0.79548 1.00983 0.97371 1.50179 1.05564 1.31489 1.47630 1.17909 0.83961 0.83214 0.79311 1.90791 1.85582 1.24922 1.39884 1.20311 0.94762 1.05373 0.94635 1.21496 0.96600 0.96159 0.95560 1.21121 0.93543 1.00869 0.99587 1.21183 0.99814 0.97508 0.91989 1.21390 0.95850 1.01594 0.98160 1.18416 0.91476 0.95390 0.84064 1.84794 1.81541 1.39800 1.23560 0.93738 0.93878 0.96084 0.94706 0.92531 0.89997 0.92099 0.91764 0.92062 0.89958 0.90942 0.84565 0.85119 0.85247 0.84884 0.75027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.26 10.41 55.49 0.58 -25.69 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.11 10.32 -15.06 -0.16 -6.26 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.61 -14.87 3.50 -171.24 -0.60 -15.47 16 10 C 0.14 2.76 6.99 -2.97 -0.02 2.74 16 11 C -0.11 -1.76 2.29 -90.47 -0.21 -1.97 16 12 H 0.08 1.34 6.26 -51.93 -0.33 1.01 16 13 C -0.15 -2.60 2.23 -92.65 -0.21 -2.81 16 14 H 0.07 1.25 5.14 -51.93 -0.27 0.98 16 15 C 0.21 4.66 5.22 -4.34 -0.02 4.64 16 16 C 0.17 2.33 3.45 -65.77 -0.23 2.11 16 17 H 0.11 1.52 6.39 -51.93 -0.33 1.18 16 18 C -0.13 -1.61 5.35 -25.14 -0.13 -1.74 16 19 C -0.11 -1.27 5.49 -24.70 -0.14 -1.41 16 20 C -0.09 -1.14 4.22 -88.81 -0.37 -1.52 16 21 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 22 C 0.12 1.70 5.52 -1.81 -0.01 1.69 16 23 N -0.61 -8.89 2.09 -161.19 -0.34 -9.22 16 24 C 0.57 9.03 7.02 -12.47 -0.09 8.94 16 25 O -0.53 -10.31 16.55 -1.32 -0.02 -10.33 16 26 C -0.15 -2.03 5.16 -104.85 -0.54 -2.57 16 27 C -0.08 -0.91 7.76 -39.19 -0.30 -1.21 16 28 C -0.13 -1.26 10.02 -39.63 -0.40 -1.66 16 29 C -0.09 -0.79 10.03 -39.54 -0.40 -1.19 16 30 C -0.15 -1.59 9.98 -39.47 -0.39 -1.98 16 31 C 0.15 1.99 6.70 -38.70 -0.26 1.73 16 32 O -0.49 -6.46 12.62 -25.29 -0.32 -6.78 16 33 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.03 0.86 7.79 -51.93 -0.40 0.45 16 37 H 0.06 1.46 7.25 -51.93 -0.38 1.08 16 38 H 0.08 1.05 6.83 -51.93 -0.35 0.70 16 39 H 0.06 0.63 5.80 -51.93 -0.30 0.33 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.76 7.72 -51.93 -0.40 0.35 16 42 H 0.08 1.16 7.60 -51.93 -0.39 0.77 16 43 H 0.07 1.09 6.64 -51.93 -0.35 0.75 16 44 H 0.14 1.41 4.78 -52.49 -0.25 1.16 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 47 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 48 H 0.39 3.64 9.06 45.56 0.41 4.05 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -33.26 363.43 -10.06 -43.32 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.84 Total: 4.84 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.97 Total: -2.78 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.36 Total: -50.38 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.34 Total: -17.11 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.26 -10.06 -43.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089779396.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.915 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds