Wall clock time and date at job start Wed Apr 1 2020 01:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00414 * 2 1 4 4 H 1.48500 * 109.47065 * 274.99237 * 3 2 1 5 5 H 1.48497 * 109.47300 * 34.99122 * 3 2 1 6 6 H 1.48498 * 109.47152 * 154.99243 * 3 2 1 7 7 C 1.38813 * 119.99225 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99621 * 162.07064 * 7 2 1 9 9 N 1.36936 * 120.00470 * 342.07101 * 7 2 1 10 10 C 1.48157 * 127.83509 * 170.06728 * 9 7 2 11 11 C 1.54377 * 104.57125 * 140.39671 * 10 9 7 12 12 H 1.09002 * 110.80862 * 264.32039 * 11 10 9 13 13 C 1.54158 * 105.00651 * 24.00010 * 11 10 9 14 14 H 1.09006 * 110.99682 * 239.16806 * 13 11 10 15 15 C 1.49207 * 127.42596 * 349.64954 * 9 7 2 16 16 C 1.53260 * 109.37133 * 116.45263 * 13 11 10 17 17 H 1.09000 * 110.51620 * 181.84381 * 16 13 11 18 18 C 1.53329 * 108.67058 * 60.40941 * 16 13 11 19 19 C 1.53997 * 109.92124 * 299.77211 * 18 16 13 20 20 C 1.52981 * 109.08400 * 141.61838 * 11 10 9 21 21 H 1.09002 * 109.64385 * 65.49947 * 20 11 10 22 22 C 1.53603 * 109.11631 * 305.40172 * 20 11 10 23 23 N 1.47633 * 108.11098 * 302.92679 * 16 13 11 24 24 C 1.34771 * 122.02722 * 239.27634 * 23 16 13 25 25 O 1.21595 * 120.00214 * 354.56573 * 24 23 16 26 26 C 1.47540 * 120.00345 * 174.55850 * 24 23 16 27 27 C 1.39703 * 120.18632 * 50.68687 * 26 24 23 28 28 C 1.37790 * 119.90936 * 179.97438 * 27 26 24 29 29 C 1.38553 * 120.29670 * 359.97438 * 28 27 26 30 30 C 1.38058 * 120.39233 * 0.02727 * 29 28 27 31 31 C 1.38710 * 120.08086 * 359.73899 * 30 29 28 32 32 O 1.35652 * 120.15068 * 180.28302 * 31 30 29 33 33 H 0.97005 * 119.99790 * 359.97438 * 1 2 3 34 34 H 1.08997 * 110.41425 * 21.62560 * 10 9 7 35 35 H 1.08997 * 110.51227 * 259.21894 * 10 9 7 36 36 H 1.09002 * 110.27450 * 100.67428 * 15 9 7 37 37 H 1.08994 * 111.02938 * 337.91193 * 15 9 7 38 38 H 1.09004 * 109.44732 * 58.81753 * 18 16 13 39 39 H 1.08996 * 109.44968 * 178.72803 * 18 16 13 40 40 H 1.09006 * 109.17435 * 240.43933 * 19 18 16 41 41 H 1.08996 * 110.22724 * 120.27366 * 19 18 16 42 42 H 1.08998 * 110.00859 * 59.53904 * 22 20 11 43 43 H 1.08998 * 109.99672 * 180.83936 * 22 20 11 44 44 H 1.08001 * 120.05022 * 359.95705 * 27 26 24 45 45 H 1.07995 * 119.85311 * 179.97438 * 28 27 26 46 46 H 1.07998 * 119.80069 * 180.02562 * 29 28 27 47 47 H 1.07994 * 119.96060 * 179.97438 * 30 29 28 48 48 H 0.96702 * 114.00027 * 270.20505 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5046 2.6199 0.8028 6 1 3.5966 1.4118 0.5919 7 6 2.0101 -1.2023 -0.0005 8 1 3.0508 -1.2249 -0.2885 9 7 1.3752 -2.3595 0.3640 10 6 1.8740 -3.7487 0.2362 11 6 1.4169 -4.4465 1.5352 12 1 2.2125 -4.4374 2.2802 13 6 0.2028 -3.6302 2.0209 14 1 0.3774 -3.2263 3.0182 15 6 0.0267 -2.4962 0.9877 16 6 -1.0471 -4.5169 2.0005 17 1 -1.9240 -3.9483 2.3101 18 6 -0.8195 -5.7075 2.9395 19 6 0.3970 -6.5244 2.4657 20 6 0.9823 -5.8765 1.2085 21 1 1.8425 -6.4518 0.8664 22 6 -0.0852 -5.8380 0.1048 23 7 -1.2221 -5.0319 0.6280 24 6 -2.3361 -4.7881 -0.0902 25 8 -3.2758 -4.2112 0.4223 26 6 -2.4155 -5.2211 -1.4984 27 6 -2.1018 -6.5370 -1.8474 28 6 -2.1785 -6.9354 -3.1642 29 6 -2.5660 -6.0367 -4.1450 30 6 -2.8787 -4.7334 -3.8139 31 6 -2.8117 -4.3165 -2.4926 32 8 -3.1242 -3.0378 -2.1649 33 1 -0.4850 0.8401 0.0004 34 1 2.9614 -3.7570 0.1625 35 1 1.4310 -4.2351 -0.6329 36 1 -0.7104 -2.7783 0.2358 37 1 -0.2701 -1.5724 1.4842 38 1 -0.6193 -5.3423 3.9468 39 1 -1.7104 -6.3353 2.9520 40 1 0.0776 -7.5405 2.2337 41 1 1.1580 -6.5537 3.2454 42 1 0.3192 -5.3626 -0.7888 43 1 -0.4163 -6.8499 -0.1290 44 1 -1.7994 -7.2410 -1.0863 45 1 -1.9354 -7.9527 -3.4331 46 1 -2.6237 -6.3577 -5.1745 47 1 -3.1796 -4.0387 -4.5840 48 1 -2.3723 -2.4303 -2.1902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089779397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:07 Heat of formation + Delta-G solvation = -5.022645 kcal Electronic energy + Delta-G solvation = -32239.603627 eV Core-core repulsion = 28260.587917 eV Total energy + Delta-G solvation = -3979.015710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.12294 -39.67197 -37.71680 -36.48696 -35.44983 -33.05623 -32.20612 -31.94161 -30.70883 -29.71107 -29.10133 -26.59811 -25.53009 -24.84479 -23.48600 -22.66854 -21.78473 -20.59535 -20.50958 -19.94801 -18.16838 -17.43436 -16.78584 -16.43098 -16.11036 -15.99773 -15.68715 -15.31233 -14.85451 -14.56087 -14.22530 -14.05380 -13.80382 -13.60989 -13.43441 -12.96309 -12.78212 -12.71270 -12.28297 -12.24650 -12.12884 -11.84026 -11.78559 -11.61308 -11.40861 -11.17754 -11.06365 -10.79908 -10.70850 -10.50385 -10.44795 -10.02475 -9.86064 -9.75259 -9.64460 -9.49575 -9.33919 -8.97202 -8.61274 -8.57616 -8.14870 -6.86353 -5.77689 -3.05161 1.01822 1.27328 2.98836 3.22194 3.38499 3.46097 3.47776 3.71941 4.36253 4.47988 4.57782 4.75667 4.76719 4.89372 4.91713 4.98626 5.16422 5.26082 5.32499 5.39615 5.41875 5.44044 5.51292 5.65394 5.67311 5.72096 5.77263 5.81262 5.86582 5.97395 6.02377 6.03882 6.11488 6.20467 6.21820 6.30152 6.36846 6.38079 6.40343 6.46585 6.58956 6.73205 6.75984 6.87502 6.98283 7.41643 7.57688 7.73989 7.79408 7.92711 8.19741 8.53580 9.11598 9.77816 10.54186 11.36270 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.009836 B = 0.005246 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.977996 B = 5335.638452 C = 6913.823262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.005 4.005 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.129 3.871 11 C -0.092 4.092 12 H 0.072 0.928 13 C -0.119 4.119 14 H 0.076 0.924 15 C 0.169 3.831 16 C 0.152 3.848 17 H 0.099 0.901 18 C -0.126 4.126 19 C -0.109 4.109 20 C -0.091 4.091 21 H 0.082 0.918 22 C 0.113 3.887 23 N -0.595 5.595 24 C 0.571 3.429 25 O -0.524 6.524 26 C -0.148 4.148 27 C -0.079 4.079 28 C -0.140 4.140 29 C -0.089 4.089 30 C -0.154 4.154 31 C 0.166 3.834 32 O -0.486 6.486 33 H 0.253 0.747 34 H 0.042 0.958 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.133 0.867 48 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 -17.232 -2.108 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.202 4.202 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.002 3.998 11 C -0.112 4.112 12 H 0.090 0.910 13 C -0.140 4.140 14 H 0.094 0.906 15 C 0.044 3.956 16 C 0.049 3.951 17 H 0.117 0.883 18 C -0.165 4.165 19 C -0.146 4.146 20 C -0.110 4.110 21 H 0.101 0.899 22 C -0.009 4.009 23 N -0.329 5.329 24 C 0.359 3.641 25 O -0.400 6.400 26 C -0.152 4.152 27 C -0.097 4.097 28 C -0.158 4.158 29 C -0.107 4.107 30 C -0.173 4.173 31 C 0.120 3.880 32 O -0.299 6.299 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.151 0.849 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.173 -16.840 -1.822 17.077 hybrid contribution 1.000 1.091 -0.140 1.487 sum -1.173 -15.748 -1.962 15.913 Atomic orbital electron populations 1.69976 1.04951 1.25325 1.55107 1.24739 0.95417 0.97708 1.02322 0.86266 0.79020 0.84013 0.77471 1.21743 1.21600 1.20671 1.18945 0.93235 0.83631 1.39777 0.90782 1.45210 1.16650 0.99604 1.70638 1.21826 0.96874 0.87227 0.93870 1.22097 0.97358 0.92439 0.99284 0.90970 1.22705 0.92842 0.97206 1.01242 0.90598 1.21704 0.87040 0.94997 0.91876 1.21318 0.99322 0.93913 0.80595 0.88258 1.22087 0.97969 0.97253 0.99184 1.21673 0.97389 0.98248 0.97338 1.21404 0.97216 0.97541 0.94836 0.89938 1.22405 0.86416 0.94438 0.97612 1.48544 1.16595 1.52320 1.15449 1.17842 0.82136 0.78943 0.85197 1.90802 1.36546 1.41352 1.71261 1.20375 1.04854 0.95726 0.94205 1.21234 0.97383 0.94333 0.96768 1.21018 1.02215 0.99958 0.92647 1.21127 0.97213 0.92783 0.99561 1.21434 1.03033 0.97401 0.95389 1.18482 0.93325 0.85655 0.90569 1.84729 1.38296 1.15955 1.90890 0.93669 0.93967 0.95751 0.95634 0.90308 0.91092 0.91994 0.92373 0.91601 0.90235 0.91720 0.85198 0.85510 0.85516 0.84942 0.73634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.34 10.99 55.49 0.61 -25.73 16 2 C 0.00 -0.13 5.31 -17.43 -0.09 -0.22 16 3 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.22 10.32 -15.06 -0.16 -6.37 16 8 H 0.07 1.97 7.89 -52.48 -0.41 1.56 16 9 N -0.60 -14.72 3.40 -167.96 -0.57 -15.29 16 10 C 0.13 2.51 6.56 -2.41 -0.02 2.50 16 11 C -0.09 -1.48 3.11 -89.30 -0.28 -1.76 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.12 -2.18 3.12 -89.14 -0.28 -2.46 16 14 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 15 C 0.17 4.00 5.38 -1.80 -0.01 3.99 16 16 C 0.15 2.50 2.90 -67.01 -0.19 2.30 16 17 H 0.10 1.86 7.20 -51.93 -0.37 1.48 16 18 C -0.13 -1.61 5.87 -26.04 -0.15 -1.76 16 19 C -0.11 -1.19 5.76 -26.18 -0.15 -1.34 16 20 C -0.09 -1.13 2.83 -90.28 -0.26 -1.39 16 21 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 22 C 0.11 1.51 4.35 -2.42 -0.01 1.50 16 23 N -0.60 -9.68 1.97 -163.84 -0.32 -10.01 16 24 C 0.57 10.62 6.18 -12.47 -0.08 10.54 16 25 O -0.52 -11.78 16.19 -2.49 -0.04 -11.82 16 26 C -0.15 -2.39 5.30 -104.84 -0.56 -2.94 16 27 C -0.08 -0.97 8.37 -39.20 -0.33 -1.30 16 28 C -0.14 -1.45 10.02 -39.63 -0.40 -1.85 16 29 C -0.09 -0.94 10.03 -39.53 -0.40 -1.34 16 30 C -0.15 -2.01 9.98 -39.47 -0.39 -2.40 16 31 C 0.17 2.72 6.70 -38.69 -0.26 2.46 16 32 O -0.49 -8.93 12.59 -26.43 -0.33 -9.26 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.48 5.29 -51.93 -0.27 0.20 16 36 H 0.03 0.65 6.26 -51.93 -0.33 0.33 16 37 H 0.08 2.16 6.52 -51.93 -0.34 1.82 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.18 5.77 -51.93 -0.30 0.88 16 43 H 0.06 0.70 5.85 -51.93 -0.30 0.39 16 44 H 0.13 1.35 6.06 -52.49 -0.32 1.03 16 45 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 48 H 0.40 6.85 9.06 45.56 0.41 7.26 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -33.44 365.68 -10.20 -43.64 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.02 Total: 8.00 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -4.00 Total: -1.85 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.29 Total: -51.03 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.37 Total: -21.08 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.44 -10.20 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089779397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.614 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds