Wall clock time and date at job start Wed Apr 1 2020 01:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99855 * 2 1 4 4 H 1.48494 * 109.47352 * 270.00001 * 3 2 1 5 5 H 1.48496 * 109.46892 * 30.00291 * 3 2 1 6 6 H 1.48506 * 109.46961 * 150.00117 * 3 2 1 7 7 C 1.37883 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99566 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.46904 * 111.00121 * 69.99807 * 10 9 7 12 12 C 1.50695 * 109.47190 * 293.95627 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25239 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.46907 * 110.99975 * 193.95393 * 10 9 7 19 19 C 1.50693 * 109.47015 * 66.04813 * 18 10 9 20 20 C 1.38175 * 120.02573 * 260.00081 * 19 18 10 21 21 C 1.38243 * 120.05432 * 180.02562 * 20 19 18 22 22 C 1.38287 * 120.11489 * 359.97242 * 21 20 19 23 23 C 1.38124 * 120.05180 * 0.02692 * 22 21 20 24 24 C 1.38709 * 120.03342 * 79.72413 * 19 18 10 25 25 O 1.35900 * 120.05248 * 359.97438 * 24 19 18 26 26 C 1.42905 * 116.99963 * 180.02562 * 25 24 19 27 27 C 1.53005 * 109.46892 * 180.02562 * 26 25 24 28 28 O 1.42896 * 109.46981 * 65.00110 * 27 26 25 29 29 H 0.97005 * 120.00296 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47373 * 60.00362 * 9 7 2 31 31 H 1.08999 * 109.47282 * 299.99499 * 9 7 2 32 32 H 1.09001 * 109.46737 * 173.95446 * 11 10 9 33 33 H 1.08996 * 109.46745 * 53.95365 * 11 10 9 34 34 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 35 35 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 36 36 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 37 37 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 38 38 H 1.09000 * 109.46788 * 186.04531 * 18 10 9 39 39 H 1.08994 * 109.46987 * 306.04018 * 18 10 9 40 40 H 1.07995 * 119.96832 * 359.97438 * 20 19 18 41 41 H 1.08000 * 119.93895 * 179.97438 * 21 20 19 42 42 H 1.07994 * 119.97609 * 180.02562 * 22 21 20 43 43 H 1.08007 * 120.02880 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.46906 * 300.00066 * 26 25 24 45 45 H 1.09001 * 109.47144 * 60.00188 * 26 25 24 46 46 H 1.08999 * 109.46697 * 185.00002 * 27 26 25 47 47 H 1.08995 * 109.46959 * 305.00108 * 27 26 25 48 48 H 0.96704 * 113.99680 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2057 -3.6156 -0.0027 11 6 2.9044 -3.7121 1.2859 12 6 3.7744 -2.4967 1.4779 13 6 5.0862 -2.4941 1.0280 14 6 5.8509 -1.3558 1.2308 15 6 5.2830 -0.2671 1.8655 16 7 4.0303 -0.3031 2.2753 17 6 3.2734 -1.3687 2.0993 18 6 1.5362 -4.8805 -0.3346 19 6 1.0428 -4.8293 -1.7575 20 6 -0.2854 -4.5527 -2.0193 21 6 -0.7387 -4.5062 -3.3245 22 6 0.1354 -4.7357 -4.3712 23 6 1.4640 -5.0126 -4.1147 24 6 1.9228 -5.0543 -2.8059 25 8 3.2309 -5.3205 -2.5513 26 6 4.0796 -5.5413 -3.6796 27 6 5.5042 -5.8243 -3.1985 28 8 5.5244 -7.0503 -2.4646 29 1 -0.4851 0.8401 0.0004 30 1 0.6248 -2.5563 -0.8920 31 1 0.6241 -2.5575 0.8880 32 1 3.5247 -4.6084 1.2967 33 1 2.1732 -3.7665 2.0924 34 1 5.5033 -3.3599 0.5354 35 1 6.8776 -1.3202 0.8974 36 1 5.8720 0.6237 2.0270 37 1 2.2516 -1.3613 2.4489 38 1 2.2409 -5.7045 -0.2237 39 1 0.6917 -5.0318 0.3377 40 1 -0.9701 -4.3735 -1.2036 41 1 -1.7774 -4.2902 -3.5269 42 1 -0.2211 -4.6984 -5.3899 43 1 2.1464 -5.1922 -4.9325 44 1 3.7124 -6.3952 -4.2489 45 1 4.0792 -4.6546 -4.3136 46 1 6.1689 -5.9047 -4.0587 47 1 5.8390 -5.0104 -2.5555 48 1 6.3979 -7.2928 -2.1281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237198325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:08 Heat of formation + Delta-G solvation = -1.195321 kcal Electronic energy + Delta-G solvation = -30969.627828 eV Core-core repulsion = 26990.778083 eV Total energy + Delta-G solvation = -3978.849745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.99018 -39.46032 -37.69250 -36.52209 -36.18668 -32.74239 -32.34478 -31.15030 -30.43130 -30.09377 -28.91238 -27.53068 -25.83362 -23.86222 -23.42405 -22.55957 -22.11081 -21.29038 -20.73059 -19.82657 -17.95937 -17.58877 -16.59455 -16.24326 -15.82370 -15.64870 -15.43525 -15.33457 -14.73546 -14.58762 -14.35755 -14.23858 -14.03591 -13.77814 -13.27280 -13.11968 -12.85510 -12.55104 -12.34637 -12.22435 -12.12482 -12.01732 -11.83430 -11.58427 -11.36526 -11.06793 -10.89240 -10.75551 -10.71405 -10.52029 -10.48576 -10.24824 -10.13129 -9.77027 -9.33784 -8.78936 -8.59065 -8.41201 -8.37294 -7.74719 -7.60848 -7.22169 -6.04334 -3.95566 1.68993 1.86428 2.07304 2.24910 3.41406 3.43946 3.47945 3.63619 4.07648 4.12945 4.52395 4.69653 4.87365 5.03815 5.11533 5.13388 5.23116 5.26977 5.32585 5.38868 5.40394 5.46706 5.54097 5.60096 5.66047 5.72912 5.78109 5.83395 5.95144 5.98068 6.02859 6.12161 6.19109 6.23087 6.43390 6.52086 6.68423 6.71786 6.80132 6.93455 6.94420 7.17784 7.20193 7.28151 7.32279 7.47212 7.66187 7.78759 7.83347 8.11114 8.20110 8.54200 8.97819 9.03828 9.59945 11.03996 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.009467 B = 0.004932 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.032895 B = 5676.290886 C = 7357.848219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.875 3.125 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.239 1.239 7 C -0.494 4.494 8 H 0.076 0.924 9 C 0.185 3.815 10 N -0.522 5.522 11 C 0.112 3.888 12 C -0.112 4.112 13 C -0.069 4.069 14 C -0.212 4.212 15 C 0.092 3.908 16 N -0.506 5.506 17 C 0.187 3.813 18 C 0.104 3.896 19 C -0.093 4.093 20 C -0.065 4.065 21 C -0.160 4.160 22 C -0.087 4.087 23 C -0.220 4.220 24 C 0.153 3.847 25 O -0.288 6.288 26 C 0.060 3.940 27 C 0.080 3.920 28 O -0.566 6.566 29 H 0.261 0.739 30 H 0.038 0.962 31 H -0.011 1.011 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.073 0.927 39 H 0.030 0.970 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.033 -12.309 -5.164 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.702 3.298 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.162 1.162 7 C -0.532 4.532 8 H 0.093 0.907 9 C 0.060 3.940 10 N -0.246 5.246 11 C -0.016 4.016 12 C -0.114 4.114 13 C -0.095 4.095 14 C -0.233 4.233 15 C -0.064 4.064 16 N -0.216 5.216 17 C 0.030 3.970 18 C -0.024 4.024 19 C -0.094 4.094 20 C -0.084 4.084 21 C -0.178 4.178 22 C -0.106 4.106 23 C -0.238 4.238 24 C 0.106 3.894 25 O -0.201 6.201 26 C -0.016 4.016 27 C 0.002 3.998 28 O -0.371 6.371 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.007 0.993 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.361 -11.373 -5.046 14.456 hybrid contribution 0.585 0.408 -0.478 0.859 sum 7.946 -10.964 -5.524 14.624 Atomic orbital electron populations 1.69965 1.06218 1.26922 1.49514 1.24925 0.94669 0.99290 0.95014 0.86798 0.82330 0.83123 0.77540 1.21774 1.21668 1.16190 1.21545 0.94135 0.89720 1.47801 0.90652 1.19887 0.90172 0.87446 0.96461 1.62203 1.30876 1.02962 1.28574 1.20712 0.95392 0.94415 0.91074 1.20402 0.94281 0.97591 0.99160 1.21077 0.93719 0.97674 0.97003 1.21688 1.00616 0.95703 1.05246 1.22356 0.91940 0.96910 0.95179 1.67710 1.05526 1.27109 1.21247 1.22307 0.97286 0.86779 0.90612 1.20762 0.96805 0.93783 0.91008 1.19094 0.92130 1.03729 0.94447 1.20922 0.94425 0.96063 0.96969 1.20929 0.99759 1.04461 0.92665 1.20785 0.92814 0.98245 0.98710 1.21095 0.97395 1.10214 0.95129 1.18693 0.83207 0.94765 0.92685 1.86218 1.16524 1.84699 1.32633 1.22759 0.89558 1.00488 0.88800 1.22178 0.94785 0.87235 0.95626 1.86564 1.35578 1.40568 1.74386 0.92965 0.94378 0.99290 0.91778 0.95073 0.86513 0.86770 0.84894 0.83567 0.90889 0.95234 0.85684 0.86383 0.86530 0.86255 0.91955 0.90876 0.91991 0.92059 0.77544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 2 C 0.06 1.79 5.44 -17.82 -0.10 1.70 16 3 Si 0.87 22.17 28.92 -169.99 -4.92 17.26 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.24 -5.87 5.35 56.52 0.30 -5.57 16 7 C -0.49 -13.15 5.38 -34.44 -0.19 -13.34 16 8 H 0.08 2.04 4.79 -52.49 -0.25 1.79 16 9 C 0.19 4.59 4.52 -4.98 -0.02 4.57 16 10 N -0.52 -10.89 4.55 -238.97 -1.09 -11.98 16 11 C 0.11 2.11 5.14 -4.98 -0.03 2.09 16 12 C -0.11 -2.21 3.48 -104.48 -0.36 -2.58 16 13 C -0.07 -1.24 9.65 -39.28 -0.38 -1.62 16 14 C -0.21 -3.66 10.11 -39.44 -0.40 -4.06 16 15 C 0.09 1.74 10.66 -17.54 -0.19 1.55 16 16 N -0.51 -10.98 8.63 -13.25 -0.11 -11.09 16 17 C 0.19 4.05 6.95 -17.55 -0.12 3.93 16 18 C 0.10 1.91 4.75 -4.98 -0.02 1.89 16 19 C -0.09 -1.71 4.63 -104.47 -0.48 -2.19 16 20 C -0.07 -1.14 8.36 -39.60 -0.33 -1.47 16 21 C -0.16 -2.51 10.04 -39.56 -0.40 -2.91 16 22 C -0.09 -1.28 10.04 -39.61 -0.40 -1.68 16 23 C -0.22 -3.36 9.04 -39.43 -0.36 -3.72 16 24 C 0.15 2.66 6.66 -39.22 -0.26 2.40 16 25 O -0.29 -4.84 9.34 -24.28 -0.23 -5.07 16 26 C 0.06 0.75 5.12 37.16 0.19 0.94 16 27 C 0.08 0.82 7.43 37.16 0.28 1.09 16 28 O -0.57 -6.30 13.62 -40.08 -0.55 -6.85 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.04 1.02 5.94 -51.93 -0.31 0.72 16 31 H -0.01 -0.28 7.99 -51.93 -0.41 -0.70 16 32 H 0.06 1.07 7.89 -51.93 -0.41 0.66 16 33 H 0.03 0.58 7.96 -51.93 -0.41 0.17 16 34 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 35 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.15 3.36 7.67 -52.49 -0.40 2.96 16 38 H 0.07 1.27 7.65 -51.93 -0.40 0.87 16 39 H 0.03 0.52 7.98 -51.93 -0.41 0.11 16 40 H 0.13 2.12 8.04 -52.49 -0.42 1.70 16 41 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.12 1.50 6.30 -52.48 -0.33 1.17 16 44 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 45 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.38 2.33 9.12 45.56 0.42 2.74 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -33.20 386.87 -10.23 -43.43 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.34 Total: 7.00 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.57 Total: -13.41 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.47 Total: -48.19 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.77 Total: -11.91 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.92 Total: 17.26 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.20 -10.23 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237198325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.232 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds