Wall clock time and date at job start Wed Apr 1 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99855 * 2 1 4 4 H 1.48494 * 109.47352 * 270.00001 * 3 2 1 5 5 H 1.48496 * 109.46892 * 30.00291 * 3 2 1 6 6 H 1.48506 * 109.46961 * 150.00117 * 3 2 1 7 7 C 1.37883 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99566 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.46904 * 111.00121 * 69.99807 * 10 9 7 12 12 C 1.50695 * 109.47190 * 293.95627 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25239 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.46907 * 110.99975 * 193.95393 * 10 9 7 19 19 C 1.50693 * 109.47015 * 66.04813 * 18 10 9 20 20 C 1.38175 * 120.02573 * 260.00081 * 19 18 10 21 21 C 1.38243 * 120.05432 * 180.02562 * 20 19 18 22 22 C 1.38287 * 120.11489 * 359.97242 * 21 20 19 23 23 C 1.38124 * 120.05180 * 0.02692 * 22 21 20 24 24 C 1.38709 * 120.03342 * 79.72413 * 19 18 10 25 25 O 1.35900 * 120.05248 * 359.97438 * 24 19 18 26 26 C 1.42905 * 116.99963 * 180.02562 * 25 24 19 27 27 C 1.53005 * 109.46892 * 180.02562 * 26 25 24 28 28 O 1.42896 * 109.46981 * 65.00110 * 27 26 25 29 29 H 0.97005 * 120.00296 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47373 * 60.00362 * 9 7 2 31 31 H 1.08999 * 109.47282 * 299.99499 * 9 7 2 32 32 H 1.09001 * 109.46737 * 173.95446 * 11 10 9 33 33 H 1.08996 * 109.46745 * 53.95365 * 11 10 9 34 34 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 35 35 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 36 36 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 37 37 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 38 38 H 1.09000 * 109.46788 * 186.04531 * 18 10 9 39 39 H 1.08994 * 109.46987 * 306.04018 * 18 10 9 40 40 H 1.07995 * 119.96832 * 359.97438 * 20 19 18 41 41 H 1.08000 * 119.93895 * 179.97438 * 21 20 19 42 42 H 1.07994 * 119.97609 * 180.02562 * 22 21 20 43 43 H 1.08007 * 120.02880 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.46906 * 300.00066 * 26 25 24 45 45 H 1.09001 * 109.47144 * 60.00188 * 26 25 24 46 46 H 1.08999 * 109.46697 * 185.00002 * 27 26 25 47 47 H 1.08995 * 109.46959 * 305.00108 * 27 26 25 48 48 H 0.96704 * 113.99680 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2057 -3.6156 -0.0027 11 6 2.9044 -3.7121 1.2859 12 6 3.7744 -2.4967 1.4779 13 6 5.0862 -2.4941 1.0280 14 6 5.8509 -1.3558 1.2308 15 6 5.2830 -0.2671 1.8655 16 7 4.0303 -0.3031 2.2753 17 6 3.2734 -1.3687 2.0993 18 6 1.5362 -4.8805 -0.3346 19 6 1.0428 -4.8293 -1.7575 20 6 -0.2854 -4.5527 -2.0193 21 6 -0.7387 -4.5062 -3.3245 22 6 0.1354 -4.7357 -4.3712 23 6 1.4640 -5.0126 -4.1147 24 6 1.9228 -5.0543 -2.8059 25 8 3.2309 -5.3205 -2.5513 26 6 4.0796 -5.5413 -3.6796 27 6 5.5042 -5.8243 -3.1985 28 8 5.5244 -7.0503 -2.4646 29 1 -0.4851 0.8401 0.0004 30 1 0.6248 -2.5563 -0.8920 31 1 0.6241 -2.5575 0.8880 32 1 3.5247 -4.6084 1.2967 33 1 2.1732 -3.7665 2.0924 34 1 5.5033 -3.3599 0.5354 35 1 6.8776 -1.3202 0.8974 36 1 5.8720 0.6237 2.0270 37 1 2.2516 -1.3613 2.4489 38 1 2.2409 -5.7045 -0.2237 39 1 0.6917 -5.0318 0.3377 40 1 -0.9701 -4.3735 -1.2036 41 1 -1.7774 -4.2902 -3.5269 42 1 -0.2211 -4.6984 -5.3899 43 1 2.1464 -5.1922 -4.9325 44 1 3.7124 -6.3952 -4.2489 45 1 4.0792 -4.6546 -4.3136 46 1 6.1689 -5.9047 -4.0587 47 1 5.8390 -5.0104 -2.5555 48 1 6.3979 -7.2928 -2.1281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237198325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:07 Heat of formation + Delta-G solvation = -24.382811 kcal Electronic energy + Delta-G solvation = -30970.633313 eV Core-core repulsion = 26990.778083 eV Total energy + Delta-G solvation = -3979.855230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.28046 -40.92731 -38.84492 -37.90483 -37.21597 -34.73739 -33.80704 -32.65346 -31.65490 -31.34398 -30.06432 -29.42361 -27.26129 -25.56258 -24.48589 -24.10909 -23.72919 -22.46497 -22.03386 -21.41512 -19.01743 -18.62361 -18.46089 -17.73194 -17.19193 -17.00044 -16.75596 -16.54830 -16.43745 -15.99924 -15.88507 -15.47354 -15.20212 -14.98202 -14.65834 -14.58694 -14.44366 -14.02244 -13.78673 -13.67015 -13.62522 -13.51245 -13.25537 -13.04548 -12.92519 -12.57213 -12.41143 -12.27194 -12.15046 -12.03465 -11.79181 -11.73693 -11.51698 -11.31448 -10.90731 -10.60483 -10.31930 -9.99790 -9.72494 -9.28762 -8.98400 -8.89918 -8.16126 -6.10938 0.40947 0.56816 0.63826 0.74399 1.36855 1.41644 1.59444 2.38949 2.45075 2.84172 3.12241 3.28407 3.39359 3.65704 3.86427 3.88985 3.94544 4.10383 4.14342 4.20051 4.21372 4.26287 4.36895 4.38143 4.44854 4.47977 4.50793 4.62619 4.64562 4.68479 4.73094 4.75795 4.83053 4.92941 5.04464 5.14796 5.17059 5.26556 5.35295 5.47079 5.48570 5.56586 5.67372 5.70251 5.76275 5.97577 6.12143 6.16550 6.41409 6.61820 6.68783 6.94630 6.96020 7.42467 7.48261 8.93159 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.009467 B = 0.004932 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.032895 B = 5676.290886 C = 7357.848219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.019 3.981 3 Si 0.921 3.079 4 H -0.294 1.294 5 H -0.299 1.299 6 H -0.226 1.226 7 C -0.483 4.483 8 H 0.075 0.925 9 C 0.206 3.794 10 N -0.522 5.522 11 C 0.112 3.888 12 C -0.121 4.121 13 C -0.067 4.067 14 C -0.192 4.192 15 C 0.074 3.926 16 N -0.530 5.530 17 C 0.167 3.833 18 C 0.110 3.890 19 C -0.123 4.123 20 C -0.085 4.085 21 C -0.170 4.170 22 C -0.084 4.084 23 C -0.221 4.221 24 C 0.140 3.860 25 O -0.309 6.309 26 C 0.047 3.953 27 C 0.082 3.918 28 O -0.590 6.590 29 H 0.257 0.743 30 H 0.014 0.986 31 H -0.041 1.041 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.026 0.974 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.054 0.946 48 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.392 -13.247 -7.032 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.180 4.180 3 Si 0.748 3.252 4 H -0.222 1.222 5 H -0.226 1.226 6 H -0.148 1.148 7 C -0.521 4.521 8 H 0.093 0.907 9 C 0.080 3.920 10 N -0.246 5.246 11 C -0.016 4.016 12 C -0.124 4.124 13 C -0.093 4.093 14 C -0.212 4.212 15 C -0.081 4.081 16 N -0.240 5.240 17 C 0.010 3.990 18 C -0.018 4.018 19 C -0.124 4.124 20 C -0.104 4.104 21 C -0.188 4.188 22 C -0.102 4.102 23 C -0.239 4.239 24 C 0.094 3.906 25 O -0.222 6.222 26 C -0.028 4.028 27 C 0.005 3.995 28 O -0.399 6.399 29 H 0.066 0.934 30 H 0.032 0.968 31 H -0.023 1.023 32 H 0.111 0.889 33 H 0.043 0.957 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.178 0.822 37 H 0.134 0.866 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.132 0.868 41 H 0.154 0.846 42 H 0.169 0.831 43 H 0.166 0.834 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.115 0.885 47 H 0.072 0.928 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 10.764 -12.335 -6.905 17.767 hybrid contribution -0.276 0.592 0.127 0.666 sum 10.488 -11.742 -6.777 17.141 Atomic orbital electron populations 1.70067 1.07390 1.27019 1.52316 1.25498 0.95126 1.01757 0.95605 0.86088 0.81824 0.80299 0.77014 1.22155 1.22602 1.14830 1.21672 0.93986 0.90214 1.46246 0.90726 1.19471 0.90031 0.88666 0.93811 1.62138 1.29857 1.02981 1.29641 1.20798 0.95419 0.95422 0.89955 1.20492 0.95473 0.97127 0.99263 1.21454 0.92769 0.98998 0.96089 1.22147 1.02245 0.94205 1.02565 1.22918 0.91206 0.98749 0.95248 1.67619 1.07057 1.27421 1.21922 1.21986 0.96573 0.88030 0.92387 1.20743 0.96762 0.92704 0.91552 1.19196 0.92853 1.05667 0.94652 1.21009 0.94448 0.97103 0.97826 1.21225 1.01098 1.04263 0.92234 1.21218 0.92456 0.96500 1.00016 1.21467 0.98182 1.09168 0.95119 1.18862 0.83674 0.94884 0.93223 1.86180 1.16383 1.84642 1.35004 1.23132 0.90116 1.01315 0.88233 1.22240 0.93796 0.86726 0.96766 1.86509 1.37674 1.40857 1.74812 0.93400 0.96781 1.02342 0.88933 0.95706 0.83825 0.82507 0.82223 0.86604 0.89725 0.95597 0.86796 0.84601 0.83079 0.83382 0.91054 0.89906 0.88453 0.92768 0.75254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 2 C 0.02 1.08 5.44 84.66 0.46 1.54 16 3 Si 0.92 46.36 28.92 68.60 1.98 48.34 16 4 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 5 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 6 H -0.23 -10.74 5.35 99.48 0.53 -10.21 16 7 C -0.48 -26.32 5.38 25.60 0.14 -26.19 16 8 H 0.07 4.04 4.79 -2.91 -0.01 4.02 16 9 C 0.21 10.67 4.52 85.55 0.39 11.06 16 10 N -0.52 -22.08 4.55 -909.96 -4.14 -26.22 16 11 C 0.11 4.19 5.14 85.55 0.44 4.63 16 12 C -0.12 -4.70 3.48 -19.77 -0.07 -4.77 16 13 C -0.07 -2.21 9.65 22.47 0.22 -1.99 16 14 C -0.19 -5.81 10.11 22.36 0.23 -5.58 16 15 C 0.07 2.60 10.66 84.69 0.90 3.50 16 16 N -0.53 -22.62 8.63 -195.83 -1.69 -24.31 16 17 C 0.17 7.34 6.95 84.67 0.59 7.93 16 18 C 0.11 4.12 4.75 85.55 0.41 4.53 16 19 C -0.12 -4.59 4.63 -19.77 -0.09 -4.68 16 20 C -0.09 -3.10 8.36 22.26 0.19 -2.91 16 21 C -0.17 -5.29 10.04 22.28 0.22 -5.07 16 22 C -0.08 -2.30 10.04 22.25 0.22 -2.08 16 23 C -0.22 -6.32 9.04 22.37 0.20 -6.11 16 24 C 0.14 4.77 6.66 22.51 0.15 4.92 16 25 O -0.31 -9.92 9.34 -87.78 -0.82 -10.74 16 26 C 0.05 1.05 5.12 71.98 0.37 1.42 16 27 C 0.08 1.43 7.43 71.98 0.53 1.97 16 28 O -0.59 -11.56 13.62 -144.34 -1.97 -13.52 16 29 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 30 H 0.01 0.80 5.94 -2.39 -0.01 0.78 16 31 H -0.04 -2.33 7.99 -2.39 -0.02 -2.35 16 32 H 0.09 2.92 7.89 -2.39 -0.02 2.90 16 33 H 0.02 0.95 7.96 -2.39 -0.02 0.94 16 34 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.16 4.64 8.06 -2.91 -0.02 4.61 16 37 H 0.12 5.68 7.67 -2.91 -0.02 5.66 16 38 H 0.08 2.93 7.65 -2.39 -0.02 2.91 16 39 H 0.03 0.97 7.98 -2.39 -0.02 0.95 16 40 H 0.11 4.21 8.04 -2.91 -0.02 4.18 16 41 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 42 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.15 3.25 6.30 -2.91 -0.02 3.24 16 44 H 0.07 1.44 7.65 -2.39 -0.02 1.42 16 45 H 0.08 1.65 7.68 -2.39 -0.02 1.64 16 46 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 47 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.40 3.78 9.12 -74.05 -0.68 3.10 16 Total: -1.00 -74.39 386.87 -0.74 -75.13 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.12 Total: 25.30 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 5.49 Total: -17.87 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -5.55 Total: -106.64 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -2.79 Total: -24.26 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.98 Total: 48.34 kcal Total: -74.39 -0.74 -75.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237198325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.747 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds