Wall clock time and date at job start Wed Apr 1 2020 01:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00232 * 2 1 4 4 H 1.48499 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47007 * 299.99522 * 3 2 1 6 6 H 1.48500 * 109.47026 * 60.00040 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00384 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53497 * 114.20898 * 180.02562 * 9 7 2 11 11 N 1.47063 * 87.98442 * 220.34079 * 10 9 7 12 12 C 1.34782 * 136.05258 * 207.07851 * 11 10 9 13 13 O 1.21281 * 120.00306 * 354.97263 * 12 11 10 14 14 C 1.50705 * 119.99532 * 174.97612 * 12 11 10 15 15 C 1.56858 * 119.89035 * 82.56019 * 14 12 11 16 16 C 1.52936 * 59.59513 * 110.60509 * 15 14 12 17 17 H 1.09003 * 119.49362 * 247.64720 * 16 15 14 18 18 C 1.54559 * 118.19890 * 92.59002 * 16 15 14 19 19 C 1.54933 * 102.93874 * 272.55707 * 18 16 15 20 20 N 1.47945 * 117.37049 * 286.73109 * 14 12 11 21 21 C 1.46901 * 110.99951 * 5.35935 * 20 14 12 22 22 C 1.50699 * 109.47165 * 179.66013 * 21 20 14 23 23 C 1.38266 * 119.94456 * 90.51263 * 22 21 20 24 24 C 1.38135 * 120.05782 * 179.97438 * 23 22 21 25 25 C 1.38735 * 119.94553 * 359.97438 * 24 23 22 26 26 O 1.35905 * 120.05745 * 179.97438 * 25 24 23 27 27 C 1.38734 * 119.88568 * 359.97438 * 25 24 23 28 28 C 1.38141 * 119.94303 * 0.02562 * 27 25 24 29 29 C 1.47064 * 87.88635 * 27.33840 * 11 10 9 30 30 H 0.96998 * 119.99906 * 0.02562 * 1 2 3 31 31 H 1.09005 * 113.28025 * 313.05995 * 9 7 2 32 32 H 1.08999 * 113.47030 * 105.55845 * 10 9 7 33 33 H 1.09005 * 113.51495 * 335.12888 * 10 9 7 34 34 H 1.09008 * 117.00585 * 3.09071 * 15 14 12 35 35 H 1.08994 * 118.40141 * 217.49345 * 15 14 12 36 36 H 1.08993 * 110.72374 * 154.19221 * 18 16 15 37 37 H 1.09008 * 110.71917 * 30.91831 * 18 16 15 38 38 H 1.08999 * 110.67129 * 279.02575 * 19 18 16 39 39 H 1.09010 * 110.66825 * 155.89946 * 19 18 16 40 40 H 1.09009 * 109.47350 * 59.66415 * 21 20 14 41 41 H 1.09003 * 109.47485 * 299.66238 * 21 20 14 42 42 H 1.08004 * 119.96946 * 359.71643 * 23 22 21 43 43 H 1.08001 * 120.03062 * 179.97438 * 24 23 22 44 44 H 0.96698 * 113.99862 * 270.00225 * 26 25 24 45 45 H 1.07999 * 120.02625 * 180.02562 * 27 25 24 46 46 H 1.07999 * 119.96684 * 179.97438 * 28 27 25 47 47 H 1.08997 * 113.46705 * 87.43877 * 29 11 10 48 48 H 1.08998 * 113.46833 * 217.87432 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.1486 -3.7443 0.0018 11 7 1.2103 -4.3579 -0.9501 12 6 0.8360 -5.6120 -1.2720 13 8 1.3946 -6.5610 -0.7637 14 6 -0.2766 -5.8351 -2.2637 15 6 0.0260 -5.7866 -3.8020 16 6 -0.3344 -7.1099 -3.1254 17 1 0.4194 -7.8929 -3.0422 18 6 -1.8186 -7.5410 -3.1082 19 6 -2.3631 -6.8590 -1.8280 20 7 -1.6569 -5.5524 -1.8123 21 6 -1.6607 -4.9682 -0.4644 22 6 -3.0799 -4.6868 -0.0429 23 6 -3.8026 -5.6512 0.6348 24 6 -5.1035 -5.3956 1.0228 25 6 -5.6847 -4.1697 0.7323 26 8 -6.9646 -3.9160 1.1125 27 6 -4.9570 -3.2034 0.0531 28 6 -3.6564 -3.4640 -0.3327 29 6 0.8651 -3.0012 -1.4006 30 1 -0.4850 0.8400 -0.0004 31 1 0.4432 -2.5302 0.7318 32 1 2.1841 -4.2528 0.9652 33 1 3.1388 -3.5670 -0.4179 34 1 1.0649 -5.6399 -4.0978 35 1 -0.7175 -5.3411 -4.4629 36 1 -1.9046 -8.6250 -3.0340 37 1 -2.3378 -7.1715 -3.9926 38 1 -2.1104 -7.4435 -0.9434 39 1 -3.4410 -6.7128 -1.8987 40 1 -1.0922 -4.0381 -0.4699 41 1 -1.2055 -5.6681 0.2363 42 1 -3.3511 -6.6067 0.8575 43 1 -5.6678 -6.1493 1.5518 44 1 -7.6271 -4.1635 0.4530 45 1 -5.4070 -2.2482 -0.1739 46 1 -3.0897 -2.7121 -0.8618 47 1 1.5167 -2.6271 -2.1902 48 1 -0.1927 -2.8766 -1.6319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277096921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:47 Heat of formation + Delta-G solvation = 34.731677 kcal Electronic energy + Delta-G solvation = -30690.772384 eV Core-core repulsion = 26713.480551 eV Total energy + Delta-G solvation = -3977.291833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.68912 -39.58600 -38.69986 -37.10822 -36.67343 -33.80371 -32.72339 -31.12190 -30.82527 -29.71122 -28.84679 -25.46209 -25.18973 -24.86874 -23.46078 -22.71932 -22.11394 -21.25535 -20.37993 -19.68923 -18.40127 -17.99848 -16.91520 -16.61905 -16.20394 -15.87706 -15.56967 -15.38693 -14.85599 -14.78038 -14.40500 -14.31980 -13.76162 -13.59300 -13.53168 -13.39080 -13.20981 -12.59947 -12.49448 -12.27165 -12.15144 -12.01832 -11.85397 -11.63868 -11.37080 -11.21656 -11.08893 -11.03674 -10.98016 -10.77916 -10.47437 -10.40983 -10.36636 -10.23862 -9.68685 -9.26101 -9.08511 -8.89525 -8.62021 -8.49768 -8.12642 -7.94974 -6.21061 -4.26279 1.24488 1.44660 2.91295 3.21338 3.27902 3.30991 3.33554 3.41030 3.66173 4.09304 4.21766 4.31423 4.64687 4.67912 4.85376 4.87896 4.96408 5.03166 5.07116 5.11886 5.20689 5.31829 5.44064 5.48209 5.59964 5.72590 5.75095 5.76497 5.80939 5.83050 5.95776 5.97871 6.04477 6.11709 6.13634 6.21077 6.23707 6.34816 6.37563 6.48579 6.54891 6.60905 6.71194 6.73454 6.88177 6.90665 7.01906 7.50433 7.61488 7.76199 8.13909 8.39157 8.65117 8.77362 9.40707 10.88515 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.007881 B = 0.004566 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3552.138594 B = 6130.691391 C = 8870.747189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.071 3.929 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.098 3.902 11 N -0.634 5.634 12 C 0.565 3.435 13 O -0.560 6.560 14 C -0.007 4.007 15 C -0.114 4.114 16 C -0.147 4.147 17 H 0.115 0.885 18 C -0.094 4.094 19 C 0.036 3.964 20 N -0.461 5.461 21 C 0.072 3.928 22 C -0.078 4.078 23 C -0.100 4.100 24 C -0.149 4.149 25 C 0.097 3.903 26 O -0.501 6.501 27 C -0.143 4.143 28 C -0.070 4.070 29 C 0.100 3.900 30 H 0.264 0.736 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.044 0.956 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.386 0.614 45 H 0.128 0.872 46 H 0.136 0.864 47 H 0.075 0.925 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.157 -10.788 -5.658 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.017 3.983 10 C -0.024 4.024 11 N -0.366 5.366 12 C 0.352 3.648 13 O -0.440 6.440 14 C -0.101 4.101 15 C -0.152 4.152 16 C -0.166 4.166 17 H 0.133 0.867 18 C -0.131 4.131 19 C -0.091 4.091 20 N -0.185 5.185 21 C -0.055 4.055 22 C -0.078 4.078 23 C -0.118 4.118 24 C -0.168 4.168 25 C 0.053 3.947 26 O -0.311 6.311 27 C -0.162 4.162 28 C -0.088 4.088 29 C -0.022 4.022 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.062 0.938 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.241 0.759 45 H 0.146 0.854 46 H 0.154 0.846 47 H 0.093 0.907 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.076 -10.781 -5.229 15.655 hybrid contribution 0.568 0.228 0.143 0.629 sum -9.508 -10.553 -5.086 15.087 Atomic orbital electron populations 1.69941 1.05983 1.27044 1.48897 1.24994 0.94857 0.99293 0.94159 0.86510 0.80218 0.83428 0.77728 1.19609 1.20884 1.20888 1.20912 0.93022 0.89465 1.52200 0.91837 1.20401 0.94699 0.91140 0.92089 1.23408 0.94551 0.93215 0.91217 1.50052 1.42108 1.04853 1.39624 1.18937 0.83001 0.81536 0.81292 1.90651 1.57105 1.41184 1.55013 1.23165 0.89131 1.05243 0.92524 1.23757 1.02478 0.97712 0.91262 1.23697 0.98304 0.91496 1.03134 0.86670 1.22122 0.92783 1.00098 0.98129 1.23566 0.99466 0.88889 0.97186 1.64476 1.08304 1.22075 1.23596 1.21497 0.93571 1.01970 0.88448 1.19714 0.95433 0.94306 0.98389 1.20932 0.93808 0.98914 0.98172 1.21275 0.96300 0.96618 1.02603 1.18481 0.85426 0.93065 0.97716 1.84836 1.13955 1.86465 1.45842 1.21436 0.95570 0.99737 0.99411 1.21077 0.94034 0.96475 0.97253 1.23740 1.00186 0.76317 1.01990 0.92662 0.91341 0.92530 0.90776 0.88019 0.87514 0.90488 0.90318 0.93465 0.89472 0.87151 0.93807 0.86208 0.85816 0.75900 0.85402 0.84635 0.90698 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.12 13.26 55.43 0.74 -22.39 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -12.78 8.82 -34.44 -0.30 -13.08 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.04 0.81 3.76 -91.13 -0.34 0.47 16 10 C 0.10 2.00 8.18 -8.51 -0.07 1.93 16 11 N -0.63 -12.53 2.98 -185.08 -0.55 -13.09 16 12 C 0.57 11.05 5.91 -10.98 -0.06 10.98 16 13 O -0.56 -12.55 17.71 5.56 0.10 -12.45 16 14 C -0.01 -0.12 2.79 -129.57 -0.36 -0.48 16 15 C -0.11 -1.51 10.27 -24.68 -0.25 -1.77 16 16 C -0.15 -1.95 6.64 -89.32 -0.59 -2.54 16 17 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 18 C -0.09 -1.03 6.85 -24.89 -0.17 -1.20 16 19 C 0.04 0.45 5.22 -1.90 -0.01 0.44 16 20 N -0.46 -6.94 5.28 -215.33 -1.14 -8.08 16 21 C 0.07 1.19 4.08 -4.98 -0.02 1.17 16 22 C -0.08 -1.16 4.90 -104.60 -0.51 -1.68 16 23 C -0.10 -1.31 8.56 -39.61 -0.34 -1.65 16 24 C -0.15 -1.84 9.99 -39.44 -0.39 -2.23 16 25 C 0.10 1.25 6.71 -39.21 -0.26 0.99 16 26 O -0.50 -5.62 13.50 -19.44 -0.26 -5.88 16 27 C -0.14 -1.95 9.99 -39.43 -0.39 -2.34 16 28 C -0.07 -1.05 9.69 -39.61 -0.38 -1.43 16 29 C 0.10 2.03 7.08 -8.38 -0.06 1.97 16 30 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.07 1.68 8.11 -51.93 -0.42 1.26 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 34 H 0.10 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 38 H 0.05 0.62 7.74 -51.93 -0.40 0.22 16 39 H 0.09 1.00 7.75 -51.92 -0.40 0.60 16 40 H 0.11 2.08 4.65 -51.92 -0.24 1.84 16 41 H 0.04 0.78 7.45 -51.93 -0.39 0.40 16 42 H 0.12 1.43 7.82 -52.48 -0.41 1.02 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.39 2.32 9.06 45.56 0.41 2.74 16 45 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 47 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 48 H 0.07 1.35 6.86 -51.93 -0.36 0.99 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -29.43 393.28 -11.24 -40.68 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.40 Total: 9.37 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -4.63 Total: -8.77 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.95 Total: -43.55 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.16 Total: -18.34 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.43 -11.24 -40.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277096921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.409 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds