Wall clock time and date at job start Wed Apr 1 2020 01:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99727 * 2 1 4 4 H 1.48500 * 109.46737 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47319 * 300.00188 * 3 2 1 6 6 H 1.48499 * 109.47323 * 60.00129 * 3 2 1 7 7 C 1.37876 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99796 * 185.19293 * 7 2 1 9 9 C 1.50696 * 119.99865 * 5.19687 * 7 2 1 10 10 H 1.08993 * 109.47468 * 24.87481 * 9 7 2 11 11 C 1.50701 * 109.47115 * 144.88168 * 9 7 2 12 12 O 1.21280 * 120.00188 * 120.00123 * 11 9 7 13 13 N 1.34775 * 119.99877 * 299.99611 * 11 9 7 14 14 C 1.46500 * 120.00065 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.46822 * 179.97438 * 14 13 11 16 16 H 1.08998 * 110.85703 * 302.65558 * 15 14 13 17 17 C 1.54628 * 110.97270 * 66.45374 * 15 14 13 18 18 C 1.51273 * 104.19667 * 142.91687 * 17 15 14 19 19 O 1.21285 * 124.94387 * 163.78374 * 18 17 15 20 20 N 1.34421 * 110.11820 * 343.74335 * 18 17 15 21 21 C 1.46504 * 124.35153 * 179.57628 * 20 18 17 22 22 C 1.52993 * 117.49971 * 8.72205 * 21 20 18 23 23 C 1.52999 * 117.49652 * 300.06104 * 21 20 18 24 24 C 1.46765 * 111.29872 * 359.59484 * 20 18 17 25 25 C 1.50701 * 109.47051 * 264.87711 * 9 7 2 26 26 C 1.38241 * 120.00022 * 306.01795 * 25 9 7 27 27 C 1.38236 * 119.99768 * 179.76443 * 26 25 9 28 28 C 1.38230 * 120.00163 * 0.50412 * 27 26 25 29 29 C 1.38231 * 120.00101 * 359.74404 * 28 27 26 30 30 C 1.38235 * 120.00093 * 126.28243 * 25 9 7 31 31 H 0.97003 * 119.99938 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99498 * 359.97438 * 13 11 9 33 33 H 1.09001 * 109.46888 * 299.99733 * 14 13 11 34 34 H 1.09001 * 109.47217 * 59.99485 * 14 13 11 35 35 H 1.09005 * 110.47985 * 261.59261 * 17 15 14 36 36 H 1.08999 * 110.48305 * 24.09921 * 17 15 14 37 37 H 1.09001 * 115.54830 * 154.39433 * 21 20 18 38 38 H 1.09008 * 117.50023 * 0.02562 * 22 21 20 39 39 H 1.08993 * 117.49990 * 145.01808 * 22 21 20 40 40 H 1.09002 * 117.49413 * 214.97926 * 23 21 20 41 41 H 1.08995 * 117.49769 * 359.97438 * 23 21 20 42 42 H 1.09005 * 110.24449 * 258.01702 * 24 20 18 43 43 H 1.09003 * 110.24410 * 136.01746 * 24 20 18 44 44 H 1.08004 * 119.99707 * 359.97438 * 26 25 9 45 45 H 1.08006 * 119.99601 * 180.22568 * 27 26 25 46 46 H 1.08005 * 120.00080 * 179.72359 * 28 27 26 47 47 H 1.07998 * 120.00304 * 179.97438 * 29 28 27 48 48 H 1.08002 * 120.00099 * 0.02562 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0812 -1.1959 0.0841 9 6 1.2557 -2.4964 -0.1193 10 1 0.3034 -2.3235 -0.6204 11 6 2.0746 -3.4754 -0.9205 12 8 2.4203 -4.5264 -0.4236 13 7 2.4228 -3.1832 -2.1893 14 6 3.2183 -4.1351 -2.9684 15 6 3.4727 -3.5644 -4.3650 16 1 2.5330 -3.3388 -4.8691 17 6 4.3776 -2.3125 -4.2949 18 6 5.2564 -2.4208 -5.5214 19 8 5.9089 -1.5126 -5.9909 20 7 5.2097 -3.6703 -6.0148 21 6 5.9378 -4.1168 -7.2051 22 6 6.9612 -3.1538 -7.8098 23 6 5.6329 -3.4086 -8.5266 24 6 4.3353 -4.5296 -5.2080 25 6 1.0048 -3.0588 1.2561 26 6 2.0596 -3.2436 2.1303 27 6 1.8286 -3.7549 3.3937 28 6 0.5445 -4.0911 3.7792 29 6 -0.5096 -3.9111 2.9032 30 6 -0.2795 -3.3949 1.6416 31 1 -0.4850 0.8401 0.0004 32 1 2.1459 -2.3428 -2.5868 33 1 4.1707 -4.3084 -2.4673 34 1 2.6764 -5.0770 -3.0543 35 1 3.7761 -1.4043 -4.3356 36 1 4.9815 -2.3287 -3.3876 37 1 6.1640 -5.1823 -7.2456 38 1 7.0933 -2.1880 -7.3218 39 1 7.8607 -3.5856 -8.2485 40 1 5.6592 -4.0082 -9.4366 41 1 4.8904 -2.6108 -8.5105 42 1 4.9314 -5.1692 -4.5570 43 1 3.7007 -5.1355 -5.8549 44 1 3.0636 -2.9853 1.8274 45 1 2.6523 -3.8959 4.0780 46 1 0.3647 -4.4948 4.7647 47 1 -1.5129 -4.1742 3.2042 48 1 -1.1029 -3.2549 0.9570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362365749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:59 Heat of formation + Delta-G solvation = -19.910620 kcal Electronic energy + Delta-G solvation = -29380.866567 eV Core-core repulsion = 25401.205266 eV Total energy + Delta-G solvation = -3979.661301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.87376 -39.18298 -37.85999 -36.82846 -36.76162 -34.01072 -33.66395 -31.20754 -30.91447 -29.93429 -28.38197 -27.43303 -25.35848 -23.73036 -23.12086 -22.58320 -21.60394 -21.12536 -20.76077 -19.43600 -19.07724 -17.11974 -16.85884 -16.80805 -16.13035 -15.88897 -15.50975 -15.13905 -14.72125 -14.61546 -14.49196 -14.10849 -13.90443 -13.84687 -13.61018 -13.33184 -13.19558 -12.83989 -12.51669 -12.32516 -12.26667 -12.02543 -11.73443 -11.63683 -11.60935 -11.39703 -11.29419 -11.06751 -11.02843 -10.98048 -10.67849 -10.40919 -10.26919 -10.02327 -9.60867 -9.43403 -8.82467 -8.72359 -8.66053 -8.42795 -7.94370 -7.60874 -6.30140 -4.36800 2.37941 2.40193 2.41170 2.64239 3.17272 3.27371 3.30253 3.59516 3.65885 3.84702 4.16392 4.26173 4.35635 4.54700 4.59647 4.66688 4.74356 4.83572 4.92206 5.07127 5.18466 5.24241 5.33261 5.39900 5.45566 5.64398 5.70863 5.72304 5.77875 5.78904 5.85176 5.90897 6.01376 6.05208 6.20213 6.32380 6.47734 6.49421 6.59782 6.84588 6.90720 6.97083 7.09293 7.17556 7.37207 7.44601 7.60625 7.74358 7.94707 8.03577 8.05845 8.29996 8.67830 9.17734 9.29999 10.77978 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.002836 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.570632 B = 9869.803807 C =11352.094807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.075 3.925 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.051 3.949 10 H 0.089 0.911 11 C 0.528 3.472 12 O -0.566 6.566 13 N -0.731 5.731 14 C 0.133 3.867 15 C -0.111 4.111 16 H 0.099 0.901 17 C -0.153 4.153 18 C 0.521 3.479 19 O -0.529 6.529 20 N -0.595 5.595 21 C 0.080 3.920 22 C -0.191 4.191 23 C -0.192 4.192 24 C 0.114 3.886 25 C -0.009 4.009 26 C -0.085 4.085 27 C -0.135 4.135 28 C -0.149 4.149 29 C -0.132 4.132 30 C -0.118 4.118 31 H 0.266 0.734 32 H 0.406 0.594 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.467 -8.622 -10.935 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.130 4.130 3 Si 0.722 3.278 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.030 3.970 10 H 0.106 0.894 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.384 5.384 14 C 0.008 3.992 15 C -0.130 4.130 16 H 0.118 0.882 17 C -0.193 4.193 18 C 0.309 3.691 19 O -0.406 6.406 20 N -0.327 5.327 21 C -0.024 4.024 22 C -0.229 4.229 23 C -0.230 4.230 24 C -0.009 4.009 25 C -0.010 4.010 26 C -0.104 4.104 27 C -0.153 4.153 28 C -0.167 4.167 29 C -0.150 4.150 30 C -0.136 4.136 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.924 -8.807 -10.875 15.196 hybrid contribution 0.206 1.312 -0.130 1.334 sum 6.131 -7.495 -11.004 14.658 Atomic orbital electron populations 1.69926 1.06003 1.27344 1.47947 1.24963 0.94868 0.99424 0.93782 0.86473 0.80315 0.83098 0.77899 1.19417 1.20643 1.20809 1.20719 0.93259 0.88340 1.52944 0.91839 1.18113 0.97845 0.92147 0.88914 0.89366 1.21665 0.78963 0.86846 0.80720 1.90588 1.56621 1.26847 1.70475 1.45875 1.56082 1.22146 1.14270 1.21104 0.96566 0.93005 0.88478 1.22404 0.99081 0.94815 0.96728 0.88236 1.22498 0.98665 1.00402 0.97694 1.21064 0.81491 0.81528 0.84967 1.90600 1.44077 1.41832 1.64114 1.47674 1.46737 1.11391 1.26945 1.21503 0.99878 0.97086 0.83917 1.23769 0.92939 1.03335 1.02816 1.23360 1.00204 1.03809 0.95650 1.22061 0.92228 0.93022 0.93624 1.20021 0.92158 0.91702 0.97155 1.20818 0.99010 0.97675 0.92863 1.20950 0.96282 1.01383 0.96668 1.20791 0.93361 1.03600 0.98970 1.20899 0.97905 1.01527 0.94685 1.20981 0.96911 0.99519 0.96198 0.92388 0.75895 0.91681 0.91527 0.87299 0.86960 0.85391 0.85043 0.88595 0.88275 0.88719 0.90362 0.89838 0.87163 0.87638 0.87756 0.87599 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.55 12.84 55.43 0.71 -21.84 16 2 C 0.07 1.84 5.45 -17.82 -0.10 1.74 16 3 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -12.37 7.47 -34.44 -0.26 -12.63 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.05 1.15 2.38 -94.08 -0.22 0.93 16 10 H 0.09 2.12 7.13 -51.93 -0.37 1.75 16 11 C 0.53 10.91 7.04 -10.99 -0.08 10.83 16 12 O -0.57 -12.96 15.42 5.56 0.09 -12.88 16 13 N -0.73 -11.78 5.30 -60.29 -0.32 -12.10 16 14 C 0.13 1.65 4.95 -4.04 -0.02 1.63 16 15 C -0.11 -1.06 3.22 -88.98 -0.29 -1.35 16 16 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 17 C -0.15 -1.73 6.12 -26.75 -0.16 -1.90 16 18 C 0.52 6.75 7.88 -10.86 -0.09 6.67 16 19 O -0.53 -8.59 14.69 5.55 0.08 -8.50 16 20 N -0.60 -6.17 3.27 -164.84 -0.54 -6.71 16 21 C 0.08 0.73 6.88 -67.93 -0.47 0.26 16 22 C -0.19 -1.91 9.78 -26.70 -0.26 -2.18 16 23 C -0.19 -1.73 10.35 -26.69 -0.28 -2.01 16 24 C 0.11 0.93 6.91 -3.12 -0.02 0.90 16 25 C -0.01 -0.21 4.30 -104.62 -0.45 -0.66 16 26 C -0.09 -1.89 8.31 -39.58 -0.33 -2.22 16 27 C -0.13 -2.63 10.05 -39.59 -0.40 -3.03 16 28 C -0.15 -2.75 10.05 -39.59 -0.40 -3.14 16 29 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 30 C -0.12 -2.53 9.67 -39.58 -0.38 -2.92 16 31 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.41 6.25 8.22 -40.82 -0.34 5.92 16 33 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.11 1.34 7.85 -51.93 -0.41 0.93 16 37 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.13 1.73 5.29 -51.92 -0.27 1.45 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.11 2.46 7.89 -52.48 -0.41 2.05 16 45 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 46 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 47 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 48 H 0.11 2.30 7.96 -52.49 -0.42 1.88 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -30.53 398.97 -10.83 -41.35 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -7.25 Total: 12.12 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -4.59 Total: -11.98 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.15 Total: -40.65 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.17 Total: -21.38 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.53 -10.83 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362365749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.442 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds