Wall clock time and date at job start Wed Apr 1 2020 01:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 110.77942 * 2 1 4 4 C 1.54320 * 110.72285 * 123.23939 * 2 1 3 5 5 N 1.47019 * 107.27078 * 140.55721 * 4 2 1 6 6 C 1.34779 * 125.64708 * 181.02506 * 5 4 2 7 7 O 1.21273 * 120.00135 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00138 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.47221 * 180.02562 * 8 6 5 10 10 C 1.33994 * 124.92590 * 90.00439 * 9 8 6 11 11 C 1.46776 * 106.18660 * 180.02562 * 10 9 8 12 12 C 1.39407 * 134.37054 * 179.97438 * 11 10 9 13 13 C 1.36741 * 119.71923 * 179.97438 * 12 11 10 14 14 C 1.38744 * 120.41547 * 0.25449 * 13 12 11 15 15 C 1.37854 * 120.68182 * 359.46552 * 14 13 12 16 16 C 1.38937 * 119.82105 * 0.54971 * 15 14 13 17 17 O 1.34459 * 124.92287 * 270.02192 * 9 8 6 18 18 C 1.47426 * 108.70666 * 1.28744 * 5 4 2 19 19 C 1.55134 * 104.71857 * 335.55488 * 18 5 4 20 20 H 1.08996 * 111.22048 * 279.17332 * 19 18 5 21 21 N 1.46501 * 110.90460 * 155.27442 * 19 18 5 22 22 C 1.36939 * 120.00131 * 92.97472 * 21 19 18 23 23 H 1.07997 * 119.99696 * 359.97438 * 22 21 19 24 24 C 1.38808 * 119.99755 * 179.97438 * 22 21 19 25 25 N 1.31628 * 119.99479 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00526 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46866 * 90.00041 * 26 24 22 28 28 H 1.48498 * 109.47416 * 209.99926 * 26 24 22 29 29 H 1.48504 * 109.46675 * 330.00162 * 26 24 22 30 30 H 1.08998 * 109.47327 * 298.21595 * 1 2 3 31 31 H 1.09007 * 109.47292 * 58.21216 * 1 2 3 32 32 H 1.09001 * 109.47394 * 178.21501 * 1 2 3 33 33 H 1.09004 * 109.47148 * 181.78852 * 3 2 1 34 34 H 1.09002 * 109.47056 * 301.78852 * 3 2 1 35 35 H 1.08995 * 109.46827 * 61.78848 * 3 2 1 36 36 H 1.08998 * 109.88048 * 21.14328 * 4 2 1 37 37 H 1.09002 * 110.01475 * 260.04291 * 4 2 1 38 38 H 1.09005 * 109.46916 * 59.99459 * 8 6 5 39 39 H 1.09003 * 109.46886 * 299.99966 * 8 6 5 40 40 H 1.08002 * 126.90318 * 0.02562 * 10 9 8 41 41 H 1.08000 * 120.13964 * 0.02562 * 12 11 10 42 42 H 1.08002 * 119.78994 * 179.97438 * 13 12 11 43 43 H 1.07995 * 119.65932 * 179.74621 * 14 13 12 44 44 H 1.07997 * 120.08636 * 180.26130 * 15 14 13 45 45 H 1.09001 * 110.36362 * 94.48103 * 18 5 4 46 46 H 1.09001 * 110.36891 * 216.80328 * 18 5 4 47 47 H 0.97001 * 119.99991 * 272.97844 * 21 19 18 48 48 H 0.97001 * 119.99528 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 6 2.0759 -0.7912 1.2072 5 7 3.2444 -1.5506 0.7389 6 6 3.9923 -2.3835 1.4896 7 8 3.7197 -2.5557 2.6587 8 6 5.1672 -3.1009 0.8763 9 6 5.8292 -3.9638 1.9193 10 6 5.5107 -5.2403 2.1737 11 6 6.4022 -5.6767 3.2550 12 6 6.5718 -6.8689 3.9573 13 6 7.5224 -6.9492 4.9370 14 6 8.3143 -5.8508 5.2390 15 6 8.1649 -4.6655 4.5513 16 6 7.2047 -4.5625 3.5525 17 8 6.8248 -3.5644 2.7299 18 6 3.4665 -1.2455 -0.6862 19 6 2.0788 -0.7954 -1.2138 20 1 1.4448 -1.6531 -1.4380 21 7 2.2213 0.0697 -2.3876 22 6 2.1866 -0.4712 -3.6451 23 1 2.0546 -1.5356 -3.7716 24 6 2.3211 0.3486 -4.7571 25 7 2.2882 -0.1715 -5.9659 26 14 2.5486 2.1897 -4.5384 27 1 3.9974 2.5014 -4.4424 28 1 1.9651 2.9025 -5.7031 29 1 1.8644 2.6288 -3.2957 30 1 -0.3634 0.4859 0.9055 31 1 -0.3634 0.5414 -0.8736 32 1 -0.3634 -1.0272 -0.0320 33 1 3.1620 1.4058 -0.0321 34 1 1.6955 1.9623 -0.8735 35 1 1.7474 1.9425 0.9056 36 1 1.3129 -1.4759 1.5774 37 1 2.3736 -0.1044 1.9996 38 1 5.8834 -2.3700 0.5007 39 1 4.8215 -3.7267 0.0535 40 1 4.7508 -5.8295 1.6820 41 1 5.9555 -7.7257 3.7281 42 1 7.6544 -7.8722 5.4821 43 1 9.0586 -5.9266 6.0179 44 1 8.7895 -3.8178 4.7915 45 1 4.1946 -0.4413 -0.7929 46 1 3.8031 -2.1361 -1.2169 47 1 2.3403 1.0257 -2.2739 48 1 2.3818 0.4014 -6.7430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996108564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:07 Heat of formation + Delta-G solvation = 12.808528 kcal Electronic energy + Delta-G solvation = -29346.695065 eV Core-core repulsion = 25368.452573 eV Total energy + Delta-G solvation = -3978.242493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.59447 -40.19583 -38.33296 -37.89812 -34.35577 -33.58210 -33.21524 -31.55760 -31.19156 -30.58410 -28.15930 -27.91066 -27.23521 -25.86005 -23.84552 -23.15174 -22.11562 -21.55040 -21.16934 -19.29595 -18.93945 -17.76959 -17.51554 -17.16115 -16.88449 -16.22573 -15.98087 -15.60999 -15.04757 -14.76334 -14.45893 -14.26140 -14.01029 -13.84709 -13.77291 -13.30590 -13.25609 -13.16755 -12.75210 -12.71585 -12.46332 -12.39771 -12.20963 -12.14783 -11.88691 -11.73436 -11.47956 -11.42819 -11.11401 -11.08785 -10.68702 -10.63703 -10.39948 -10.29544 -10.05639 -9.87376 -9.67829 -9.10683 -8.78798 -8.50742 -8.28908 -7.45919 -5.91223 -3.29232 0.72217 1.19075 2.14225 2.50104 2.64072 3.13906 3.26035 3.28744 3.36369 3.54509 4.14444 4.44036 4.45652 4.49175 4.72046 4.79767 4.87038 4.90147 4.94076 4.96945 5.01075 5.06789 5.24634 5.28431 5.31268 5.37932 5.51661 5.55399 5.58664 5.64817 5.67591 5.75954 5.83459 5.93340 6.00188 6.03918 6.06043 6.11923 6.13699 6.22857 6.24355 6.28487 6.38006 6.41301 6.48631 6.49928 6.66236 7.05134 7.59353 7.83072 8.16940 8.27541 9.04091 9.76130 9.94291 11.26323 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.002312 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.282450 B =12106.156540 C =12760.873324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 C -0.139 4.139 4 C 0.122 3.878 5 N -0.611 5.611 6 C 0.529 3.471 7 O -0.541 6.541 8 C -0.066 4.066 9 C 0.063 3.937 10 C -0.195 4.195 11 C -0.126 4.126 12 C -0.071 4.071 13 C -0.139 4.139 14 C -0.098 4.098 15 C -0.107 4.107 16 C 0.055 3.945 17 O -0.188 6.188 18 C 0.068 3.932 19 C 0.187 3.813 20 H 0.079 0.921 21 N -0.734 5.734 22 C -0.253 4.253 23 H 0.092 0.908 24 C 0.011 3.989 25 N -0.928 5.928 26 Si 0.879 3.121 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.276 1.276 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.158 0.842 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.367 0.633 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.327 -8.201 19.137 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 C -0.196 4.196 4 C 0.000 4.000 5 N -0.345 5.345 6 C 0.317 3.683 7 O -0.419 6.419 8 C -0.106 4.106 9 C 0.015 3.985 10 C -0.214 4.214 11 C -0.126 4.126 12 C -0.090 4.090 13 C -0.157 4.157 14 C -0.116 4.116 15 C -0.125 4.125 16 C 0.008 3.992 17 O -0.090 6.090 18 C -0.058 4.058 19 C 0.075 3.925 20 H 0.097 0.903 21 N -0.376 5.376 22 C -0.383 4.383 23 H 0.110 0.890 24 C -0.186 4.186 25 N -0.574 5.574 26 Si 0.709 3.291 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.202 1.202 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.148 0.852 40 H 0.176 0.824 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.149 0.851 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.202 0.798 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.311 -8.207 19.545 22.424 hybrid contribution 0.191 1.290 -0.134 1.311 sum 7.502 -6.917 19.411 21.930 Atomic orbital electron populations 1.21693 0.93098 1.02068 1.01868 1.21916 0.96383 0.95761 0.95179 1.21781 1.01039 0.94983 1.01800 1.22024 0.87307 0.94259 0.96453 1.48425 1.29781 1.43757 1.12500 1.19858 0.83213 0.79256 0.86008 1.90731 1.70823 1.64096 1.16210 1.20246 0.95836 0.99301 0.95184 1.21442 0.89784 0.93676 0.93563 1.22171 1.03178 0.95394 1.00673 1.19942 0.98427 0.95193 0.99087 1.20295 0.97807 0.95883 0.94972 1.20755 0.97025 0.99078 0.98875 1.20895 0.99623 0.91892 0.99239 1.19947 0.98044 0.99405 0.95130 1.19610 0.98487 0.86440 0.94697 1.83930 1.45551 1.37863 1.41648 1.23578 1.02411 1.01184 0.78581 1.21350 0.91948 0.93462 0.85741 0.90322 1.42771 1.87759 1.05346 1.01722 1.19067 1.43292 0.94747 0.81199 0.88975 1.24669 1.01445 0.97363 0.95085 1.69695 1.56141 1.34541 0.97031 0.86651 0.78121 0.87128 0.77154 1.20905 1.21565 1.20210 0.93036 0.91457 0.92458 0.92457 0.91623 0.92741 0.91406 0.91750 0.86561 0.85176 0.82421 0.85552 0.85459 0.84910 0.85140 0.91066 0.90521 0.79793 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.49 37.15 0.32 -1.37 16 2 C -0.09 -1.27 0.85 -152.68 -0.13 -1.40 16 3 C -0.14 -1.91 7.55 37.16 0.28 -1.63 16 4 C 0.12 1.69 6.04 -3.07 -0.02 1.67 16 5 N -0.61 -8.71 3.32 -170.38 -0.57 -9.28 16 6 C 0.53 7.87 7.84 -10.98 -0.09 7.78 16 7 O -0.54 -9.95 16.36 5.56 0.09 -9.86 16 8 C -0.07 -0.78 5.21 -29.03 -0.15 -0.93 16 9 C 0.06 0.86 5.72 -35.80 -0.20 0.65 16 10 C -0.20 -2.50 11.01 -37.63 -0.41 -2.92 16 11 C -0.13 -1.63 6.40 -105.16 -0.67 -2.30 16 12 C -0.07 -0.74 10.05 -39.69 -0.40 -1.14 16 13 C -0.14 -1.21 9.98 -39.94 -0.40 -1.61 16 14 C -0.10 -0.85 10.01 -39.53 -0.40 -1.25 16 15 C -0.11 -1.14 10.07 -39.46 -0.40 -1.54 16 16 C 0.06 0.75 7.42 -38.47 -0.29 0.46 16 17 O -0.19 -2.79 10.58 3.91 0.04 -2.74 16 18 C 0.07 1.00 6.07 -2.41 -0.01 0.99 16 19 C 0.19 3.12 2.97 -65.66 -0.20 2.92 16 20 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 21 N -0.73 -15.18 4.95 -51.24 -0.25 -15.44 16 22 C -0.25 -6.45 10.44 -15.06 -0.16 -6.60 16 23 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 24 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 25 N -0.93 -27.43 13.97 55.49 0.78 -26.66 16 26 Si 0.88 20.56 27.73 -169.99 -4.71 15.85 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -5.98 6.52 56.52 0.37 -5.61 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.06 0.80 7.42 -51.93 -0.39 0.41 16 34 H 0.06 1.00 6.75 -51.93 -0.35 0.65 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 37 H 0.06 0.88 7.85 -51.93 -0.41 0.48 16 38 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.13 1.21 7.85 -51.93 -0.41 0.81 16 40 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.07 1.07 7.69 -51.93 -0.40 0.67 16 46 H 0.08 1.06 7.48 -51.93 -0.39 0.68 16 47 H 0.37 7.52 3.31 -40.82 -0.14 7.39 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -32.44 390.79 -9.27 -41.71 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.11 Total: 8.53 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -3.42 Total: -8.00 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.04 Total: -51.37 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.13 Total: -12.60 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.71 Total: 15.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.44 -9.27 -41.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996108564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.517 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds