Wall clock time and date at job start Wed Apr 1 2020 01:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 110.77942 * 2 1 4 4 C 1.54320 * 110.72285 * 123.23939 * 2 1 3 5 5 N 1.47019 * 107.27078 * 140.55721 * 4 2 1 6 6 C 1.34779 * 125.64708 * 181.02506 * 5 4 2 7 7 O 1.21273 * 120.00135 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00138 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.47221 * 180.02562 * 8 6 5 10 10 C 1.33994 * 124.92590 * 90.00439 * 9 8 6 11 11 C 1.46776 * 106.18660 * 180.02562 * 10 9 8 12 12 C 1.39407 * 134.37054 * 179.97438 * 11 10 9 13 13 C 1.36741 * 119.71923 * 179.97438 * 12 11 10 14 14 C 1.38744 * 120.41547 * 0.25449 * 13 12 11 15 15 C 1.37854 * 120.68182 * 359.46552 * 14 13 12 16 16 C 1.38937 * 119.82105 * 0.54971 * 15 14 13 17 17 O 1.34459 * 124.92287 * 270.02192 * 9 8 6 18 18 C 1.47426 * 108.70666 * 1.28744 * 5 4 2 19 19 C 1.55134 * 104.71857 * 335.55488 * 18 5 4 20 20 H 1.08996 * 111.22048 * 279.17332 * 19 18 5 21 21 N 1.46501 * 110.90460 * 155.27442 * 19 18 5 22 22 C 1.36939 * 120.00131 * 92.97472 * 21 19 18 23 23 H 1.07997 * 119.99696 * 359.97438 * 22 21 19 24 24 C 1.38808 * 119.99755 * 179.97438 * 22 21 19 25 25 N 1.31628 * 119.99479 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00526 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46866 * 90.00041 * 26 24 22 28 28 H 1.48498 * 109.47416 * 209.99926 * 26 24 22 29 29 H 1.48504 * 109.46675 * 330.00162 * 26 24 22 30 30 H 1.08998 * 109.47327 * 298.21595 * 1 2 3 31 31 H 1.09007 * 109.47292 * 58.21216 * 1 2 3 32 32 H 1.09001 * 109.47394 * 178.21501 * 1 2 3 33 33 H 1.09004 * 109.47148 * 181.78852 * 3 2 1 34 34 H 1.09002 * 109.47056 * 301.78852 * 3 2 1 35 35 H 1.08995 * 109.46827 * 61.78848 * 3 2 1 36 36 H 1.08998 * 109.88048 * 21.14328 * 4 2 1 37 37 H 1.09002 * 110.01475 * 260.04291 * 4 2 1 38 38 H 1.09005 * 109.46916 * 59.99459 * 8 6 5 39 39 H 1.09003 * 109.46886 * 299.99966 * 8 6 5 40 40 H 1.08002 * 126.90318 * 0.02562 * 10 9 8 41 41 H 1.08000 * 120.13964 * 0.02562 * 12 11 10 42 42 H 1.08002 * 119.78994 * 179.97438 * 13 12 11 43 43 H 1.07995 * 119.65932 * 179.74621 * 14 13 12 44 44 H 1.07997 * 120.08636 * 180.26130 * 15 14 13 45 45 H 1.09001 * 110.36362 * 94.48103 * 18 5 4 46 46 H 1.09001 * 110.36891 * 216.80328 * 18 5 4 47 47 H 0.97001 * 119.99991 * 272.97844 * 21 19 18 48 48 H 0.97001 * 119.99528 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 6 2.0759 -0.7912 1.2072 5 7 3.2444 -1.5506 0.7389 6 6 3.9923 -2.3835 1.4896 7 8 3.7197 -2.5557 2.6587 8 6 5.1672 -3.1009 0.8763 9 6 5.8292 -3.9638 1.9193 10 6 5.5107 -5.2403 2.1737 11 6 6.4022 -5.6767 3.2550 12 6 6.5718 -6.8689 3.9573 13 6 7.5224 -6.9492 4.9370 14 6 8.3143 -5.8508 5.2390 15 6 8.1649 -4.6655 4.5513 16 6 7.2047 -4.5625 3.5525 17 8 6.8248 -3.5644 2.7299 18 6 3.4665 -1.2455 -0.6862 19 6 2.0788 -0.7954 -1.2138 20 1 1.4448 -1.6531 -1.4380 21 7 2.2213 0.0697 -2.3876 22 6 2.1866 -0.4712 -3.6451 23 1 2.0546 -1.5356 -3.7716 24 6 2.3211 0.3486 -4.7571 25 7 2.2882 -0.1715 -5.9659 26 14 2.5486 2.1897 -4.5384 27 1 3.9974 2.5014 -4.4424 28 1 1.9651 2.9025 -5.7031 29 1 1.8644 2.6288 -3.2957 30 1 -0.3634 0.4859 0.9055 31 1 -0.3634 0.5414 -0.8736 32 1 -0.3634 -1.0272 -0.0320 33 1 3.1620 1.4058 -0.0321 34 1 1.6955 1.9623 -0.8735 35 1 1.7474 1.9425 0.9056 36 1 1.3129 -1.4759 1.5774 37 1 2.3736 -0.1044 1.9996 38 1 5.8834 -2.3700 0.5007 39 1 4.8215 -3.7267 0.0535 40 1 4.7508 -5.8295 1.6820 41 1 5.9555 -7.7257 3.7281 42 1 7.6544 -7.8722 5.4821 43 1 9.0586 -5.9266 6.0179 44 1 8.7895 -3.8178 4.7915 45 1 4.1946 -0.4413 -0.7929 46 1 3.8031 -2.1361 -1.2169 47 1 2.3403 1.0257 -2.2739 48 1 2.3818 0.4014 -6.7430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996108564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:04 Heat of formation + Delta-G solvation = -5.733765 kcal Electronic energy + Delta-G solvation = -29347.499119 eV Core-core repulsion = 25368.452573 eV Total energy + Delta-G solvation = -3979.046547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.49683 -41.40810 -39.50438 -38.76706 -35.98978 -34.79105 -34.28163 -33.06969 -32.40546 -31.36455 -29.52058 -28.95802 -28.32564 -26.90071 -25.56724 -24.00716 -23.11391 -22.74330 -22.17570 -20.54314 -20.27088 -19.44120 -18.36640 -18.27730 -17.76661 -17.41516 -17.10007 -16.50907 -16.44252 -16.12169 -15.80105 -15.25346 -15.13179 -15.09719 -14.70541 -14.65981 -14.40584 -14.30369 -14.07283 -13.74525 -13.55279 -13.46670 -13.22175 -13.14667 -13.11147 -12.98277 -12.79225 -12.68686 -12.61894 -12.15213 -11.96322 -11.89075 -11.87142 -11.65164 -11.37301 -11.26229 -11.01981 -10.89608 -9.75449 -9.60773 -9.29832 -9.14542 -7.99041 -5.33338 -0.09437 0.38594 1.21486 1.40338 1.42609 1.46961 1.49915 1.63087 2.02569 2.50620 2.76362 3.25009 3.27192 3.30424 3.63229 3.67954 3.73715 3.77471 3.98197 4.01550 4.08017 4.12219 4.18457 4.24631 4.32181 4.36058 4.41184 4.45161 4.54428 4.65719 4.73263 4.76830 4.81105 4.85405 4.92095 4.97359 5.02326 5.12051 5.14547 5.21699 5.25694 5.32932 5.37438 5.45270 5.46739 5.49700 5.74472 5.81538 6.17121 6.24513 6.40921 6.99698 7.10406 7.84470 8.03442 9.21785 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.002312 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.282450 B =12106.156540 C =12760.873324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.138 4.138 4 C 0.123 3.877 5 N -0.607 5.607 6 C 0.530 3.470 7 O -0.578 6.578 8 C -0.060 4.060 9 C 0.040 3.960 10 C -0.201 4.201 11 C -0.154 4.154 12 C -0.083 4.083 13 C -0.135 4.135 14 C -0.089 4.089 15 C -0.123 4.123 16 C 0.021 3.979 17 O -0.211 6.211 18 C 0.078 3.922 19 C 0.177 3.823 20 H 0.068 0.932 21 N -0.734 5.734 22 C -0.226 4.226 23 H 0.064 0.936 24 C -0.058 4.058 25 N -0.981 5.981 26 Si 0.941 3.059 27 H -0.279 1.279 28 H -0.302 1.302 29 H -0.248 1.248 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.131 0.869 39 H 0.155 0.845 40 H 0.173 0.827 41 H 0.145 0.855 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.144 0.856 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.371 0.629 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 -8.339 21.787 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.082 4.082 3 C -0.196 4.196 4 C 0.000 4.000 5 N -0.340 5.340 6 C 0.319 3.681 7 O -0.459 6.459 8 C -0.099 4.099 9 C -0.007 4.007 10 C -0.220 4.220 11 C -0.154 4.154 12 C -0.101 4.101 13 C -0.152 4.152 14 C -0.107 4.107 15 C -0.142 4.142 16 C -0.026 4.026 17 O -0.114 6.114 18 C -0.047 4.047 19 C 0.066 3.934 20 H 0.086 0.914 21 N -0.377 5.377 22 C -0.357 4.357 23 H 0.082 0.918 24 C -0.250 4.250 25 N -0.631 5.631 26 Si 0.769 3.231 27 H -0.205 1.205 28 H -0.229 1.229 29 H -0.173 1.173 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.149 0.851 39 H 0.172 0.828 40 H 0.191 0.809 41 H 0.163 0.837 42 H 0.179 0.821 43 H 0.187 0.813 44 H 0.162 0.838 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.207 0.793 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.070 -8.348 22.261 25.107 hybrid contribution -0.034 1.160 -0.798 1.409 sum 8.036 -7.188 21.463 24.019 Atomic orbital electron populations 1.21687 0.92177 1.02321 1.02372 1.21848 0.97100 0.95756 0.93507 1.21787 1.00896 0.94502 1.02390 1.22052 0.87241 0.94338 0.96325 1.48409 1.29859 1.43609 1.12129 1.20318 0.83527 0.78770 0.85489 1.90712 1.71966 1.65316 1.17878 1.20312 0.94779 0.99656 0.95154 1.21738 0.90314 0.94353 0.94341 1.22508 1.03289 0.95526 1.00688 1.20286 0.98946 0.96261 0.99951 1.20662 0.98655 0.95610 0.95153 1.21232 0.95688 1.00374 0.97957 1.21400 0.99549 0.90819 0.98907 1.20354 0.97935 1.00972 0.94917 1.20179 0.99961 0.86636 0.95780 1.83872 1.46229 1.38879 1.42372 1.23327 1.00863 1.01692 0.78821 1.21512 0.93154 0.93171 0.85527 0.91356 1.42681 1.87919 1.05947 1.01190 1.19025 1.40093 0.93516 0.83042 0.91767 1.25389 1.02821 1.01951 0.94802 1.69868 1.59191 1.36066 0.97959 0.85637 0.78234 0.81633 0.77630 1.20525 1.22869 1.17269 0.90694 0.92881 0.92290 0.92633 0.92892 0.90373 0.91145 0.91187 0.85119 0.82784 0.80908 0.83717 0.82057 0.81336 0.83816 0.90794 0.89638 0.79341 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.49 71.98 0.61 -2.46 16 2 C -0.08 -2.11 0.85 -51.00 -0.04 -2.15 16 3 C -0.14 -3.46 7.55 71.98 0.54 -2.91 16 4 C 0.12 3.17 6.04 86.73 0.52 3.69 16 5 N -0.61 -16.46 3.32 -811.35 -2.70 -19.16 16 6 C 0.53 15.34 7.84 87.66 0.69 16.03 16 7 O -0.58 -21.20 16.36 -3.01 -0.05 -21.25 16 8 C -0.06 -1.37 5.21 29.10 0.15 -1.22 16 9 C 0.04 1.10 5.72 24.72 0.14 1.24 16 10 C -0.20 -5.19 11.01 23.54 0.26 -4.93 16 11 C -0.15 -3.96 6.40 -20.21 -0.13 -4.09 16 12 C -0.08 -1.59 10.05 22.20 0.22 -1.37 16 13 C -0.13 -1.96 9.98 22.04 0.22 -1.74 16 14 C -0.09 -1.30 10.01 22.30 0.22 -1.08 16 15 C -0.12 -2.53 10.07 22.35 0.23 -2.30 16 16 C 0.02 0.58 7.42 22.99 0.17 0.75 16 17 O -0.21 -6.42 10.58 -8.93 -0.09 -6.52 16 18 C 0.08 2.19 6.07 86.93 0.53 2.72 16 19 C 0.18 5.69 2.97 46.46 0.14 5.83 16 20 H 0.07 2.36 7.99 -2.39 -0.02 2.34 16 21 N -0.73 -29.65 4.95 -316.01 -1.56 -31.22 16 22 C -0.23 -11.56 10.44 84.03 0.88 -10.68 16 23 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 24 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 25 N -0.98 -59.66 13.97 21.65 0.30 -59.36 16 26 Si 0.94 42.35 27.73 68.60 1.90 44.25 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.25 -9.88 6.52 99.48 0.65 -9.23 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 33 H 0.05 1.40 7.42 -2.39 -0.02 1.39 16 34 H 0.05 1.47 6.75 -2.39 -0.02 1.45 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.80 7.82 -2.39 -0.02 1.78 16 37 H 0.07 1.76 7.85 -2.39 -0.02 1.75 16 38 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 39 H 0.15 2.67 7.85 -2.39 -0.02 2.66 16 40 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 43 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.07 2.08 7.69 -2.39 -0.02 2.06 16 46 H 0.09 2.25 7.48 -2.39 -0.02 2.23 16 47 H 0.37 14.52 3.31 -92.71 -0.31 14.21 16 48 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -72.72 390.79 4.22 -68.50 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.60 Total: 32.13 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 5.82 Total: -7.38 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -3.96 Total: -109.73 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.14 Total: -27.76 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.90 Total: 44.25 kcal Total: -72.72 4.22 -68.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996108564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.769 kcal (2) G-P(sol) polarization free energy of solvation -72.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds