Wall clock time and date at job start Wed Apr 1 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99980 * 2 1 4 4 O 1.42894 * 109.47243 * 134.99781 * 3 2 1 5 5 C 1.35903 * 116.99916 * 180.02562 * 4 3 2 6 6 C 1.38728 * 120.05625 * 180.02562 * 5 4 3 7 7 C 1.38148 * 119.94621 * 179.97438 * 6 5 4 8 8 C 1.38263 * 120.05361 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.94467 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.47180 * 90.00220 * 9 8 7 11 11 O 1.21277 * 119.99598 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00049 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99890 * 179.97438 * 12 10 9 14 14 H 1.08996 * 115.51366 * 350.58115 * 13 12 10 15 15 C 1.53002 * 117.44326 * 205.16545 * 13 12 10 16 16 H 1.08997 * 119.53592 * 4.16586 * 15 13 12 17 17 C 1.54384 * 118.12343 * 159.25464 * 15 13 12 18 18 N 1.51510 * 102.93787 * 88.08391 * 17 15 13 19 19 C 1.36929 * 127.63461 * 140.52761 * 18 17 15 20 20 H 1.08009 * 120.00007 * 194.68587 * 19 18 17 21 21 C 1.38812 * 120.00332 * 14.69489 * 19 18 17 22 22 N 1.31618 * 119.99537 * 8.93388 * 21 19 18 23 23 Si 1.86799 * 120.00372 * 188.93654 * 21 19 18 24 24 H 1.48503 * 109.47117 * 94.09968 * 23 21 19 25 25 H 1.48496 * 109.47375 * 214.10319 * 23 21 19 26 26 H 1.48504 * 109.46993 * 334.10449 * 23 21 19 27 27 C 1.48149 * 104.52752 * 320.25164 * 18 17 15 28 28 C 1.52998 * 117.44169 * 135.99918 * 13 12 10 29 29 H 1.08999 * 119.54036 * 355.83591 * 28 13 12 30 30 C 1.38267 * 120.11085 * 0.27612 * 8 7 6 31 31 C 1.38142 * 120.05664 * 359.44923 * 30 8 7 32 32 H 1.08003 * 119.99698 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.00093 * 0.02562 * 1 2 3 34 34 H 1.08001 * 120.00093 * 179.97438 * 2 1 3 35 35 H 1.09003 * 109.47175 * 14.99503 * 3 2 1 36 36 H 1.09003 * 109.46919 * 254.99706 * 3 2 1 37 37 H 1.07995 * 120.03152 * 359.94994 * 6 5 4 38 38 H 1.08004 * 119.97466 * 180.02562 * 7 6 5 39 39 H 1.09002 * 109.47474 * 329.99872 * 9 8 7 40 40 H 1.09004 * 109.47270 * 209.99601 * 9 8 7 41 41 H 0.97000 * 120.00016 * 359.97438 * 12 10 9 42 42 H 1.08997 * 110.41240 * 205.97896 * 17 15 13 43 43 H 1.08999 * 110.40864 * 328.41342 * 17 15 13 44 44 H 0.96999 * 119.99900 * 180.02562 * 22 21 19 45 45 H 1.08999 * 110.40830 * 281.08211 * 27 18 17 46 46 H 1.08995 * 110.41050 * 158.64682 * 27 18 17 47 47 H 1.08000 * 119.97018 * 179.70939 * 30 8 7 48 48 H 1.08000 * 120.02927 * 180.27565 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9089 2.3454 1.0789 6 6 4.9597 2.3525 1.9847 7 6 5.7538 3.4759 2.1108 8 6 5.5025 4.5923 1.3348 9 6 6.3699 5.8166 1.4748 10 6 7.5297 5.7226 0.5171 11 8 7.6411 4.7564 -0.2074 12 7 8.4437 6.7119 0.4664 13 6 9.5714 6.6203 -0.4642 14 1 9.6913 5.6588 -0.9633 15 6 10.8428 7.3942 -0.1098 16 1 10.9008 7.9263 0.8398 17 6 12.1692 6.9544 -0.7659 18 7 12.1875 7.7459 -2.0577 19 6 13.2621 8.3521 -2.6517 20 1 13.1070 9.0780 -3.4363 21 6 14.5507 8.0335 -2.2457 22 7 14.7509 7.0285 -1.4199 23 14 16.0007 9.0313 -2.8714 24 1 16.3194 10.1058 -1.8972 25 1 17.1800 8.1433 -3.0325 26 1 15.6552 9.6381 -4.1821 27 6 10.7856 7.7103 -2.5352 28 6 9.9345 7.8769 -1.2578 29 1 9.3153 8.7691 -1.1645 30 6 4.4526 4.5895 0.4350 31 6 3.6591 3.4667 0.3011 32 1 -0.5400 -0.9354 0.0004 33 1 -0.5400 0.9353 -0.0004 34 1 1.8500 -0.9353 0.0004 35 1 1.3855 2.1161 0.2659 36 1 2.4755 1.4867 -0.9927 37 1 5.1565 1.4808 2.5910 38 1 6.5723 3.4818 2.8155 39 1 6.7461 5.8806 2.4959 40 1 5.7824 6.7061 1.2476 41 1 8.3548 7.4845 1.0462 42 1 13.0150 7.2324 -0.1371 43 1 12.1659 5.8794 -0.9464 44 1 15.6513 6.8061 -1.1359 45 1 10.5709 6.7544 -3.0129 46 1 10.5984 8.5321 -3.2263 47 1 4.2554 5.4645 -0.1666 48 1 2.8419 3.4635 -0.4050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962881130.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:32 Heat of formation + Delta-G solvation = 36.845337 kcal Electronic energy + Delta-G solvation = -27762.763192 eV Core-core repulsion = 23785.563013 eV Total energy + Delta-G solvation = -3977.200178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.53906 -39.75513 -38.46295 -37.60207 -34.58847 -34.33492 -32.77101 -32.07863 -31.23281 -30.16517 -27.84004 -27.13275 -26.57116 -25.44477 -23.03475 -22.39428 -21.36100 -20.50546 -20.40154 -20.01695 -19.20474 -18.47530 -16.99746 -16.85275 -16.77108 -16.39618 -16.21658 -15.48611 -15.19637 -14.73808 -14.66621 -14.49706 -14.01349 -13.76698 -13.63363 -13.59172 -13.19286 -13.05680 -12.75214 -12.70217 -12.22434 -12.17426 -11.86144 -11.62500 -11.45397 -11.43733 -11.36870 -11.01540 -10.99990 -10.83146 -10.42672 -10.19410 -10.12932 -10.00994 -9.80362 -9.66689 -9.20164 -9.16435 -8.74136 -8.32094 -8.28671 -6.87443 -5.78265 -3.11605 1.17148 1.20593 1.57009 2.67056 3.01626 3.13413 3.39011 3.44246 3.46501 3.65162 4.31226 4.32545 4.47571 4.50282 4.51399 4.59986 4.65489 4.83074 4.90582 4.91619 5.01460 5.13461 5.16893 5.25367 5.30009 5.35897 5.38888 5.41548 5.50197 5.56972 5.80330 5.82896 5.89972 6.00753 6.03200 6.08334 6.14820 6.16144 6.24663 6.41529 6.53592 6.55950 6.69746 6.82032 6.89988 7.15694 7.31471 7.52116 7.60526 7.70642 8.15906 8.32501 9.07449 9.73675 10.50472 11.36663 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.027325 B = 0.001569 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.442045 B =17841.083243 C =18051.043750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 C 0.086 3.914 4 O -0.313 6.313 5 C 0.127 3.873 6 C -0.149 4.149 7 C -0.064 4.064 8 C -0.100 4.100 9 C -0.098 4.098 10 C 0.513 3.487 11 O -0.529 6.529 12 N -0.700 5.700 13 C 0.096 3.904 14 H 0.131 0.869 15 C -0.178 4.178 16 H 0.101 0.899 17 C 0.185 3.815 18 N -0.598 5.598 19 C -0.225 4.225 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.917 5.917 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.158 3.842 28 C -0.183 4.183 29 H 0.102 0.898 30 C -0.064 4.064 31 C -0.207 4.207 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.398 0.602 42 H 0.092 0.908 43 H 0.031 0.969 44 H 0.254 0.746 45 H 0.026 0.974 46 H 0.051 0.949 47 H 0.123 0.877 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.887 -6.971 8.917 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.011 3.989 4 O -0.227 6.227 5 C 0.082 3.918 6 C -0.168 4.168 7 C -0.082 4.082 8 C -0.101 4.101 9 C -0.137 4.137 10 C 0.299 3.701 11 O -0.405 6.405 12 N -0.349 5.349 13 C -0.010 4.010 14 H 0.148 0.852 15 C -0.199 4.199 16 H 0.119 0.881 17 C 0.060 3.940 18 N -0.323 5.323 19 C -0.353 4.353 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.563 5.563 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.031 3.969 28 C -0.205 4.205 29 H 0.120 0.880 30 C -0.082 4.082 31 C -0.226 4.226 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.232 0.768 42 H 0.110 0.890 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.070 0.930 47 H 0.141 0.859 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -27.520 -7.851 8.451 29.839 hybrid contribution 0.634 1.135 -0.170 1.312 sum -26.885 -6.715 8.280 28.922 Atomic orbital electron populations 1.23886 0.95407 1.02587 0.99110 1.22687 0.95661 0.97862 1.01062 1.21821 0.87892 0.96744 0.92418 1.86071 1.42188 1.35903 1.58561 1.18972 0.91553 0.85853 0.95465 1.20361 0.95789 0.99813 1.00806 1.20807 0.97597 0.91615 0.98174 1.19168 0.96818 0.95387 0.98711 1.20616 0.94848 0.97870 1.00410 1.20530 0.83066 0.82581 0.83893 1.90737 1.75497 1.31583 1.42643 1.45421 1.25559 1.22939 1.40998 1.21861 0.86650 0.97597 0.94917 0.85183 1.24569 0.93141 1.03531 0.98694 0.88073 1.21652 0.91412 0.93694 0.87213 1.45996 1.02667 1.61471 1.22139 1.19034 0.83644 1.16009 1.16613 0.90506 1.24869 0.97284 0.97763 1.00456 1.69885 1.20470 1.28396 1.37589 0.86096 0.82199 0.79130 0.78293 1.21599 1.21681 1.20537 1.21063 0.85504 0.98423 0.91886 1.24355 1.02027 0.97594 0.96488 0.87979 1.20755 0.93764 0.97601 0.96079 1.21148 1.03777 0.94250 1.03428 0.87413 0.88238 0.86193 0.91493 0.90904 0.85192 0.85350 0.87944 0.88080 0.76803 0.88965 0.95061 0.93581 0.95649 0.93043 0.85882 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 14.31 29.01 0.42 -0.44 16 2 C -0.15 -1.00 9.89 -36.03 -0.36 -1.36 16 3 C 0.09 0.64 5.15 36.01 0.19 0.83 16 4 O -0.31 -3.29 10.12 -19.43 -0.20 -3.48 16 5 C 0.13 1.40 6.69 -39.22 -0.26 1.13 16 6 C -0.15 -1.61 9.99 -39.43 -0.39 -2.01 16 7 C -0.06 -0.68 9.69 -39.61 -0.38 -1.06 16 8 C -0.10 -1.07 4.37 -104.60 -0.46 -1.52 16 9 C -0.10 -0.87 5.83 -29.03 -0.17 -1.03 16 10 C 0.51 6.84 7.82 -10.98 -0.09 6.75 16 11 O -0.53 -9.54 15.60 5.56 0.09 -9.45 16 12 N -0.70 -8.96 5.56 -53.81 -0.30 -9.26 16 13 C 0.10 1.60 5.97 -67.93 -0.41 1.20 16 14 H 0.13 2.53 7.40 -51.93 -0.38 2.14 16 15 C -0.18 -3.32 6.96 -89.30 -0.62 -3.94 16 16 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 17 C 0.19 4.44 5.91 -0.48 0.00 4.44 16 18 N -0.60 -15.41 3.44 -165.99 -0.57 -15.98 16 19 C -0.22 -6.28 10.36 -15.06 -0.16 -6.44 16 20 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 21 C -0.01 -0.19 5.42 -17.43 -0.09 -0.29 16 22 N -0.92 -26.90 10.82 55.49 0.60 -26.30 16 23 Si 0.91 21.97 29.56 -169.99 -5.03 16.94 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.16 3.37 7.05 -2.40 -0.02 3.35 16 28 C -0.18 -3.25 7.05 -89.29 -0.63 -3.88 16 29 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 30 C -0.06 -0.66 9.69 -39.61 -0.38 -1.04 16 31 C -0.21 -2.10 9.04 -39.43 -0.36 -2.45 16 32 H 0.11 0.40 8.06 -52.48 -0.42 -0.03 16 33 H 0.10 0.40 7.90 -52.49 -0.41 -0.01 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.07 0.42 7.38 -51.93 -0.38 0.03 16 36 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.10 0.67 8.08 -51.93 -0.42 0.25 16 40 H 0.10 0.65 8.08 -51.93 -0.42 0.23 16 41 H 0.40 3.81 8.83 -40.82 -0.36 3.45 16 42 H 0.09 2.45 6.55 -51.93 -0.34 2.11 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 48 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 LS Contribution 402.98 15.07 6.07 6.07 Total: -1.00 -34.28 402.98 -10.73 -45.02 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.23 Total: 4.22 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -4.18 Total: -7.76 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.27 Total: -51.55 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.11 Total: -12.94 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.28 -10.73 -45.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962881130.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.863 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds