Wall clock time and date at job start Wed Apr 1 2020 03:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00103 * 2 1 4 4 O 1.42902 * 109.46804 * 134.99932 * 3 2 1 5 5 C 1.35718 * 116.99553 * 180.02562 * 4 3 2 6 6 C 1.38989 * 119.91291 * 180.02562 * 5 4 3 7 7 C 1.37697 * 120.09124 * 179.97438 * 6 5 4 8 8 C 1.39731 * 119.90969 * 0.02562 * 7 6 5 9 9 C 1.47600 * 120.08765 * 180.02562 * 8 7 6 10 10 O 1.21591 * 120.00199 * 4.94724 * 9 8 7 11 11 N 1.34779 * 120.00272 * 184.94558 * 9 8 7 12 12 C 1.47397 * 125.59246 * 174.28567 * 11 9 8 13 13 C 1.54853 * 104.81400 * 204.60938 * 12 11 9 14 14 C 1.55129 * 101.77318 * 322.81253 * 13 12 11 15 15 H 1.08996 * 114.15459 * 158.73101 * 14 13 12 16 16 C 1.54231 * 108.08377 * 286.25255 * 14 13 12 17 17 N 1.46701 * 106.72845 * 136.07953 * 16 14 13 18 18 C 1.36936 * 125.32506 * 161.69402 * 17 16 14 19 19 H 1.07997 * 119.99786 * 359.71428 * 18 17 16 20 20 C 1.38807 * 120.00242 * 179.71648 * 18 17 16 21 21 N 1.31622 * 120.00187 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00118 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47155 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47285 * 300.00096 * 22 20 18 25 25 H 1.48502 * 109.46903 * 60.00034 * 22 20 18 26 26 C 1.46641 * 109.35362 * 341.42193 * 17 16 14 27 27 C 1.46733 * 125.58829 * 354.29120 * 11 9 8 28 28 H 1.08998 * 111.84003 * 55.80476 * 27 11 9 29 29 C 1.39728 * 119.82593 * 0.27292 * 8 7 6 30 30 C 1.37701 * 119.90889 * 359.42655 * 29 8 7 31 31 H 1.08007 * 120.00052 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.00273 * 179.97438 * 1 2 3 33 33 H 1.08001 * 119.99676 * 180.02562 * 2 1 3 34 34 H 1.08995 * 109.47074 * 14.99807 * 3 2 1 35 35 H 1.09000 * 109.46753 * 255.00107 * 3 2 1 36 36 H 1.08000 * 119.95516 * 0.02562 * 6 5 4 37 37 H 1.08001 * 120.04361 * 179.97438 * 7 6 5 38 38 H 1.09002 * 110.36945 * 85.77793 * 12 11 9 39 39 H 1.09005 * 110.46457 * 323.48921 * 12 11 9 40 40 H 1.08996 * 110.97286 * 204.68700 * 13 12 11 41 41 H 1.08999 * 110.99476 * 80.94366 * 13 12 11 42 42 H 1.09001 * 110.14784 * 16.70558 * 16 14 13 43 43 H 1.08997 * 109.92853 * 255.32932 * 16 14 13 44 44 H 0.96999 * 120.00288 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.75214 * 121.18531 * 26 17 16 46 46 H 1.08998 * 109.75805 * 241.89036 * 26 17 16 47 47 H 1.07999 * 120.04925 * 179.72533 * 29 8 7 48 48 H 1.08005 * 119.95800 * 180.29376 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9080 2.3437 1.0788 6 6 4.9599 2.3476 1.9872 7 6 5.7553 3.4640 2.1178 8 6 5.5033 4.5943 1.3359 9 6 6.3537 5.7930 1.4722 10 8 7.3284 5.7675 2.1987 11 7 6.0499 6.9158 0.7914 12 6 6.7381 8.2125 0.9245 13 6 5.6925 9.2634 0.4771 14 6 4.9780 8.5243 -0.6847 15 1 3.9843 8.9091 -0.9138 16 6 5.9298 8.5067 -1.8981 17 7 5.8716 7.1531 -2.4608 18 6 6.2720 6.8022 -3.7224 19 1 6.6648 7.5525 -4.3925 20 6 6.1729 5.4821 -4.1400 21 7 5.6946 4.5675 -3.3232 22 14 6.7184 5.0036 -5.8613 23 1 6.5121 3.5463 -6.0587 24 1 5.9198 5.7570 -6.8611 25 1 8.1577 5.3269 -6.0322 26 6 5.3238 6.2334 -1.4586 27 6 4.9797 7.0479 -0.2037 28 1 4.0102 6.7603 0.2028 29 6 4.4409 4.5887 0.4282 30 6 3.6540 3.4661 0.2992 31 1 -0.5400 0.9354 -0.0004 32 1 -0.5401 -0.9353 -0.0004 33 1 1.8499 -0.9353 -0.0004 34 1 1.3855 2.1161 0.2659 35 1 2.4755 1.4867 -0.9927 36 1 5.1543 1.4734 2.5909 37 1 6.5722 3.4663 2.8242 38 1 7.6124 8.2465 0.2744 39 1 7.0296 8.3846 1.9607 40 1 6.1796 10.1711 0.1209 41 1 4.9950 9.4883 1.2838 42 1 6.9473 8.7348 -1.5806 43 1 5.5991 9.2332 -2.6403 44 1 5.6257 3.6450 -3.6149 45 1 4.4232 5.7584 -1.8479 46 1 6.0646 5.4727 -1.2125 47 1 4.2402 5.4620 -0.1747 48 1 2.8356 3.4593 -0.4055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075959699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:18 Heat of formation + Delta-G solvation = 49.735352 kcal Electronic energy + Delta-G solvation = -30806.586104 eV Core-core repulsion = 26829.944879 eV Total energy + Delta-G solvation = -3976.641225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81124 -39.75213 -38.07310 -36.92483 -34.68816 -34.23176 -32.63168 -31.67068 -30.52934 -29.63331 -28.84508 -26.82083 -26.51528 -24.78439 -23.52524 -22.60947 -21.60916 -20.92926 -20.20125 -19.76552 -19.04259 -18.01448 -17.30917 -16.78503 -16.34588 -15.87309 -15.52817 -15.26157 -14.84456 -14.49366 -14.33895 -14.13116 -13.80427 -13.38763 -13.35731 -13.21048 -13.06156 -12.82685 -12.64644 -12.33445 -12.27060 -12.04876 -11.89014 -11.54325 -11.31951 -11.14637 -11.09057 -10.95053 -10.80371 -10.67897 -10.54942 -10.28496 -10.06936 -9.88551 -9.76247 -9.67604 -9.44078 -8.74083 -8.68682 -8.27454 -7.93991 -6.90912 -5.77957 -3.11899 1.24505 1.65513 1.85771 3.22030 3.31963 3.36924 3.39334 3.42155 3.42714 4.19630 4.43594 4.63791 4.68497 4.70602 4.83158 5.01672 5.11620 5.14825 5.16364 5.21914 5.28029 5.35075 5.43084 5.52900 5.53892 5.61280 5.63967 5.71680 5.79127 5.83728 5.89051 5.99598 6.08098 6.23798 6.24321 6.27962 6.29696 6.34942 6.39039 6.53863 6.58276 6.62142 6.71944 6.80651 6.91809 7.22993 7.44735 7.48945 7.68517 7.95662 8.17827 8.58316 9.14607 9.75574 10.38058 11.33118 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.007984 B = 0.004552 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.263970 B = 6150.200214 C = 8409.838438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.151 4.151 3 C 0.083 3.917 4 O -0.312 6.312 5 C 0.150 3.850 6 C -0.170 4.170 7 C -0.024 4.024 8 C -0.170 4.170 9 C 0.583 3.417 10 O -0.556 6.556 11 N -0.598 5.598 12 C 0.110 3.890 13 C -0.124 4.124 14 C -0.110 4.110 15 H 0.101 0.899 16 C 0.140 3.860 17 N -0.600 5.600 18 C -0.232 4.232 19 H 0.079 0.921 20 C -0.004 4.004 21 N -0.919 5.919 22 Si 0.912 3.088 23 H -0.290 1.290 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.166 3.834 27 C 0.087 3.913 28 H 0.092 0.908 29 C -0.064 4.064 30 C -0.209 4.209 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.022 0.978 43 H 0.037 0.963 44 H 0.253 0.747 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.179 0.821 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 -0.470 9.264 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.169 4.169 3 C 0.008 3.992 4 O -0.226 6.226 5 C 0.104 3.896 6 C -0.188 4.188 7 C -0.043 4.043 8 C -0.173 4.173 9 C 0.375 3.625 10 O -0.436 6.436 11 N -0.330 5.330 12 C -0.012 4.012 13 C -0.163 4.163 14 C -0.130 4.130 15 H 0.119 0.881 16 C 0.014 3.986 17 N -0.326 5.326 18 C -0.360 4.360 19 H 0.096 0.904 20 C -0.200 4.200 21 N -0.566 5.566 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.211 1.211 25 H -0.212 1.212 26 C 0.041 3.959 27 C -0.017 4.017 28 H 0.109 0.891 29 C -0.081 4.081 30 C -0.227 4.227 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.040 0.960 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.195 0.805 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.998 -0.939 9.645 13.224 hybrid contribution 0.245 -0.366 -1.310 1.382 sum -8.753 -1.305 8.335 12.157 Atomic orbital electron populations 1.23859 0.95420 1.02474 0.99584 1.22691 0.95639 0.97881 1.00669 1.21883 0.87882 0.96597 0.92835 1.85996 1.42116 1.36072 1.58396 1.19276 0.90515 0.85597 0.94222 1.20228 0.96619 0.99942 1.02058 1.20960 0.96739 0.90411 0.96191 1.19699 0.99584 0.95422 1.02608 1.17786 0.84080 0.81836 0.78830 1.90713 1.28431 1.83455 1.40990 1.48167 1.34147 1.10216 1.40506 1.22179 0.95777 0.81920 1.01329 1.22772 0.97874 0.97741 0.97867 1.23211 1.00163 0.93630 0.95974 0.88110 1.21396 0.95533 0.89240 0.92436 1.44159 1.74756 1.01861 1.11864 1.18984 1.35843 0.93258 0.87936 0.90363 1.24772 1.01145 0.95795 0.98317 1.69891 1.50846 1.01356 1.34553 0.86204 0.78474 0.77310 0.83792 1.21609 1.21143 1.21181 1.21695 0.99174 0.90888 0.84169 1.23103 0.90267 0.97636 0.90732 0.89053 1.23028 0.91116 1.00174 0.93774 1.21185 1.04398 0.94002 1.03150 0.88195 0.87580 0.86310 0.91306 0.90271 0.85075 0.84524 0.91184 0.90864 0.89808 0.91004 0.96050 0.94442 0.93615 0.92325 0.92469 0.80485 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 14.31 29.02 0.42 -1.02 16 2 C -0.15 -1.49 9.89 -36.02 -0.36 -1.85 16 3 C 0.08 0.97 5.15 36.01 0.19 1.15 16 4 O -0.31 -4.48 10.11 -18.86 -0.19 -4.67 16 5 C 0.15 2.34 6.70 -39.02 -0.26 2.08 16 6 C -0.17 -2.60 9.97 -39.50 -0.39 -2.99 16 7 C -0.02 -0.40 9.58 -39.22 -0.38 -0.78 16 8 C -0.17 -3.15 5.69 -104.96 -0.60 -3.75 16 9 C 0.58 11.69 7.37 -12.44 -0.09 11.60 16 10 O -0.56 -12.29 16.64 5.29 0.09 -12.20 16 11 N -0.60 -10.93 2.98 -169.53 -0.51 -11.44 16 12 C 0.11 1.75 6.41 -2.57 -0.02 1.73 16 13 C -0.12 -1.57 6.35 -24.63 -0.16 -1.73 16 14 C -0.11 -1.69 4.35 -87.64 -0.38 -2.07 16 15 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 16 C 0.14 2.69 6.44 -3.29 -0.02 2.66 16 17 N -0.60 -14.50 3.38 -171.89 -0.58 -15.08 16 18 C -0.23 -6.24 10.25 -15.06 -0.15 -6.39 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 20 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16 21 N -0.92 -25.72 10.24 55.49 0.57 -25.15 16 22 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.17 3.73 3.12 -3.70 -0.01 3.72 16 27 C 0.09 1.52 2.70 -66.33 -0.18 1.34 16 28 H 0.09 1.42 6.15 -51.93 -0.32 1.10 16 29 C -0.06 -1.12 7.21 -39.22 -0.28 -1.41 16 30 C -0.21 -3.37 9.01 -39.50 -0.36 -3.73 16 31 H 0.10 0.73 7.90 -52.48 -0.41 0.32 16 32 H 0.11 0.69 8.06 -52.48 -0.42 0.27 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.07 0.72 7.37 -51.93 -0.38 0.33 16 35 H 0.08 0.96 7.65 -51.93 -0.40 0.57 16 36 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.14 2.15 7.65 -52.49 -0.40 1.75 16 38 H 0.07 1.21 7.16 -51.93 -0.37 0.84 16 39 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 40 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.02 0.42 6.51 -51.93 -0.34 0.09 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.06 1.42 6.56 -51.93 -0.34 1.08 16 46 H 0.06 1.51 6.14 -51.93 -0.32 1.19 16 47 H 0.18 3.18 1.48 -60.46 -0.09 3.09 16 48 H 0.13 1.88 6.28 -52.48 -0.33 1.55 16 LS Contribution 375.98 15.07 5.67 5.67 Total: -1.00 -32.15 375.98 -9.74 -41.89 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.63 Total: 5.93 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.13 Total: -1.62 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.52 Total: -51.67 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.10 Total: -16.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.15 -9.74 -41.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075959699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.624 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds