Wall clock time and date at job start Wed Apr 1 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47181 * 220.79502 * 3 2 1 5 5 C 1.35706 * 117.00401 * 180.02562 * 4 3 2 6 6 C 1.39002 * 119.90912 * 359.72858 * 5 4 3 7 7 C 1.37703 * 120.08942 * 179.72458 * 6 5 4 8 8 C 1.39735 * 119.90736 * 0.52524 * 7 6 5 9 9 C 1.47604 * 120.08856 * 179.72633 * 8 7 6 10 10 O 1.21582 * 119.99815 * 132.13266 * 9 8 7 11 11 N 1.34774 * 119.99798 * 312.13972 * 9 8 7 12 12 C 1.46928 * 120.63331 * 3.25488 * 11 9 8 13 13 C 1.52759 * 109.01072 * 233.58997 * 12 11 9 14 14 C 1.53043 * 109.38308 * 305.58757 * 13 12 11 15 15 C 1.53039 * 109.53769 * 61.23816 * 14 13 12 16 16 C 1.46932 * 120.62950 * 183.54246 * 11 9 8 17 17 H 1.09002 * 109.57835 * 246.15166 * 16 11 9 18 18 C 1.53002 * 109.58479 * 6.43254 * 16 11 9 19 19 N 1.46496 * 109.46933 * 284.75849 * 18 16 11 20 20 C 1.36942 * 119.99987 * 185.34286 * 19 18 16 21 21 H 1.07999 * 119.99521 * 359.97438 * 20 19 18 22 22 C 1.38807 * 120.00255 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99981 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00106 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47330 * 60.00136 * 24 22 20 26 26 H 1.48500 * 109.47465 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47357 * 299.99934 * 24 22 20 28 28 C 1.39732 * 119.82727 * 359.74617 * 8 7 6 29 29 C 1.37709 * 119.91127 * 0.02562 * 28 8 7 30 30 H 4.38451 * 5.44395 * 179.97438 * 4 1 2 31 31 H 1.09001 * 109.47172 * 100.79773 * 3 2 1 32 32 H 1.08996 * 109.47503 * 340.79833 * 3 2 1 33 33 H 1.07997 * 119.95800 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.04634 * 180.27689 * 7 6 5 35 35 H 1.09005 * 109.58039 * 353.42231 * 12 11 9 36 36 H 1.08997 * 109.58728 * 113.84417 * 12 11 9 37 37 H 1.08990 * 109.56805 * 185.54833 * 13 12 11 38 38 H 1.09005 * 109.38577 * 65.51056 * 13 12 11 39 39 H 1.08997 * 109.45688 * 301.22355 * 14 13 12 40 40 H 1.08997 * 109.46197 * 181.25904 * 14 13 12 41 41 H 1.09002 * 109.49988 * 178.68462 * 15 14 13 42 42 H 1.09008 * 109.52451 * 58.60646 * 15 14 13 43 43 H 1.09004 * 109.47058 * 44.75868 * 18 16 11 44 44 H 1.09003 * 109.46902 * 164.76212 * 18 16 11 45 45 H 0.97003 * 120.00394 * 5.34386 * 19 18 16 46 46 H 0.97002 * 119.99834 * 180.02562 * 23 22 20 47 47 H 1.07997 * 120.04704 * 179.97438 * 28 8 7 48 48 H 1.07991 * 119.95748 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 1.0208 0.8802 5 6 4.4672 1.1564 0.9960 6 6 5.3126 0.3179 0.2789 7 6 6.6782 0.4560 0.3893 8 6 7.2138 1.4335 1.2320 9 6 8.6771 1.5810 1.3580 10 8 9.1863 2.6820 1.2760 11 7 9.4485 0.4952 1.5637 12 6 8.8564 -0.8491 1.5938 13 6 9.2644 -1.5436 2.8918 14 6 10.7894 -1.5251 3.0200 15 6 11.2813 -0.0768 3.0698 16 6 10.8969 0.6339 1.7683 17 1 11.4290 0.1791 0.9327 18 6 11.2619 2.1167 1.8629 19 7 11.2231 2.7154 0.5264 20 6 11.6213 4.0131 0.3456 21 1 11.9635 4.5953 1.1885 22 6 11.5841 4.5805 -0.9206 23 7 11.1665 3.8711 -1.9477 24 14 12.1265 6.3509 -1.1670 25 1 13.5443 6.4969 -0.7501 26 1 11.9928 6.7147 -2.6006 27 1 11.2744 7.2486 -0.3465 28 6 6.3606 2.2707 1.9556 29 6 4.9960 2.1293 1.8361 30 1 -1.0502 -0.0001 -0.0004 31 1 3.0093 0.1933 -1.0095 32 1 3.0098 -0.9696 0.3380 33 1 4.8979 -0.4397 -0.3695 34 1 7.3344 -0.1929 -0.1716 35 1 7.7701 -0.7709 1.5488 36 1 9.2187 -1.4272 0.7438 37 1 8.9128 -2.5752 2.8800 38 1 8.8218 -1.0180 3.7380 39 1 11.2321 -2.0297 2.1613 40 1 11.0832 -2.0400 3.9347 41 1 12.3652 -0.0644 3.1846 42 1 10.8202 0.4358 3.9141 43 1 10.5478 2.6260 2.5101 44 1 12.2648 2.2183 2.2776 45 1 10.9154 2.1926 -0.2305 46 1 11.1409 4.2676 -2.8326 47 1 6.7707 3.0271 2.6083 48 1 4.3359 2.7757 2.3953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484619084.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:56 Heat of formation + Delta-G solvation = 70.115897 kcal Electronic energy + Delta-G solvation = -30050.329451 eV Core-core repulsion = 26074.571993 eV Total energy + Delta-G solvation = -3975.757459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.66101 -39.85192 -37.65881 -36.67563 -34.41377 -33.77307 -32.69717 -31.96286 -31.10232 -29.98252 -29.73916 -27.84407 -26.11416 -24.44081 -23.20800 -23.02615 -22.44960 -21.25023 -20.45639 -19.13732 -18.74418 -18.39375 -17.21218 -16.47799 -16.33124 -16.20773 -15.42152 -14.98088 -14.83059 -14.52509 -14.42513 -14.32712 -14.12539 -13.63210 -13.49227 -13.34086 -13.20018 -12.90791 -12.82796 -12.61831 -12.26016 -12.10911 -11.99891 -11.72438 -11.51738 -11.27785 -10.99974 -10.89852 -10.76717 -10.68729 -10.63105 -10.57198 -10.45263 -10.28285 -9.83626 -9.44643 -9.04942 -8.65588 -8.53382 -8.11219 -7.99668 -6.47841 -5.48785 -2.68940 1.14118 1.29620 1.92696 2.35257 3.26501 3.29645 3.38626 3.59542 3.63009 3.64655 3.86738 3.99713 4.58598 4.74751 4.77612 4.79541 4.81673 4.86694 4.87643 4.94391 5.06996 5.21616 5.25956 5.37594 5.43513 5.44575 5.53780 5.58465 5.65627 5.83065 5.85400 5.86917 5.93883 5.98521 6.02422 6.11345 6.12495 6.16470 6.23343 6.38880 6.48469 6.58996 6.60871 6.74321 6.97578 7.09008 7.18097 7.33538 7.92462 7.95499 8.69706 8.92946 9.80873 10.42244 10.76715 11.75394 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.009535 B = 0.003318 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.825296 B = 8436.065308 C =10695.213158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.199 4.199 3 C 0.171 3.829 4 O -0.310 6.310 5 C 0.137 3.863 6 C -0.215 4.215 7 C -0.053 4.053 8 C -0.141 4.141 9 C 0.521 3.479 10 O -0.438 6.438 11 N -0.609 5.609 12 C 0.100 3.900 13 C -0.134 4.134 14 C -0.118 4.118 15 C -0.127 4.127 16 C 0.143 3.857 17 H 0.069 0.931 18 C 0.160 3.840 19 N -0.699 5.699 20 C -0.206 4.206 21 H 0.064 0.936 22 C -0.023 4.023 23 N -0.939 5.939 24 Si 0.901 3.099 25 H -0.290 1.290 26 H -0.294 1.294 27 H -0.290 1.290 28 C -0.033 4.033 29 C -0.152 4.152 30 H 0.225 0.775 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.015 0.985 45 H 0.379 0.621 46 H 0.249 0.751 47 H 0.137 0.863 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.782 -16.626 8.822 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.199 4.199 3 C 0.097 3.903 4 O -0.224 6.224 5 C 0.092 3.908 6 C -0.234 4.234 7 C -0.071 4.071 8 C -0.144 4.144 9 C 0.306 3.694 10 O -0.307 6.307 11 N -0.346 5.346 12 C -0.024 4.024 13 C -0.172 4.172 14 C -0.156 4.156 15 C -0.166 4.166 16 C 0.040 3.960 17 H 0.087 0.913 18 C 0.032 3.968 19 N -0.341 5.341 20 C -0.338 4.338 21 H 0.082 0.918 22 C -0.217 4.217 23 N -0.590 5.590 24 Si 0.734 3.266 25 H -0.217 1.217 26 H -0.220 1.220 27 H -0.217 1.217 28 C -0.052 4.052 29 C -0.171 4.171 30 H 0.241 0.759 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.032 0.968 45 H 0.213 0.787 46 H 0.059 0.941 47 H 0.155 0.845 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.569 -15.686 8.885 23.820 hybrid contribution -0.092 0.541 -0.742 0.923 sum -15.661 -15.145 8.143 23.259 Atomic orbital electron populations 1.25023 0.95872 0.98150 0.98759 1.22303 0.93579 1.02142 1.01853 1.19289 0.84886 0.91500 0.94615 1.86050 1.19768 1.53874 1.62718 1.19080 0.81323 0.95089 0.95357 1.21117 0.94123 1.03257 1.04895 1.21145 0.94332 0.95750 0.95916 1.20131 0.94557 0.98580 1.01149 1.18265 0.85609 0.85396 0.80121 1.91274 1.71476 1.24701 1.43254 1.47812 1.07557 1.05598 1.73634 1.21857 0.99377 0.83732 0.97413 1.21841 0.96664 1.00310 0.98397 1.21505 0.95414 0.96913 1.01721 1.21908 1.01218 0.95293 0.98142 1.21507 0.79522 0.98656 0.96359 0.91269 1.20904 0.96568 0.88234 0.91091 1.42165 1.77162 1.11864 1.02958 1.19103 1.32787 0.89123 0.92811 0.91845 1.24601 1.03443 0.97721 0.95935 1.69648 1.54726 1.35826 0.98832 0.86328 0.78108 0.85801 0.76388 1.21715 1.22039 1.21681 1.20982 0.91431 0.96185 0.96577 1.20323 0.94975 0.99901 1.01905 0.75877 0.89279 0.89378 0.85138 0.84942 0.89223 0.91936 0.91288 0.91674 0.91879 0.92083 0.90851 0.91618 0.94307 0.96776 0.78741 0.94079 0.84525 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 19.25 29.55 0.57 -0.63 16 2 C -0.20 -1.83 13.73 -37.12 -0.51 -2.34 16 3 C 0.17 1.47 5.21 34.37 0.18 1.65 16 4 O -0.31 -3.60 10.08 -18.82 -0.19 -3.79 16 5 C 0.14 1.66 6.70 -39.02 -0.26 1.40 16 6 C -0.22 -2.39 9.01 -39.49 -0.36 -2.75 16 7 C -0.05 -0.68 7.32 -39.22 -0.29 -0.97 16 8 C -0.14 -2.21 5.09 -104.96 -0.53 -2.74 16 9 C 0.52 9.83 6.95 -12.44 -0.09 9.74 16 10 O -0.44 -10.62 10.93 5.29 0.06 -10.57 16 11 N -0.61 -9.68 2.98 -166.67 -0.50 -10.18 16 12 C 0.10 1.15 5.23 -3.93 -0.02 1.13 16 13 C -0.13 -1.31 6.06 -26.83 -0.16 -1.47 16 14 C -0.12 -1.21 5.89 -26.69 -0.16 -1.37 16 15 C -0.13 -1.64 5.33 -26.61 -0.14 -1.78 16 16 C 0.14 2.41 2.90 -67.60 -0.20 2.22 16 17 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 18 C 0.16 3.48 4.91 -4.04 -0.02 3.46 16 19 N -0.70 -18.99 3.30 -59.91 -0.20 -19.18 16 20 C -0.21 -6.21 9.80 -15.06 -0.15 -6.36 16 21 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 23 N -0.94 -30.31 13.06 55.49 0.72 -29.59 16 24 Si 0.90 24.12 29.55 -169.99 -5.02 19.10 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 26 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 27 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 28 C -0.03 -0.48 9.70 -39.22 -0.38 -0.86 16 29 C -0.15 -1.95 9.97 -39.49 -0.39 -2.34 16 30 H 0.22 0.79 7.80 -54.08 -0.42 0.36 16 31 H 0.09 0.65 7.66 -51.93 -0.40 0.25 16 32 H 0.09 0.57 7.64 -51.93 -0.40 0.17 16 33 H 0.13 1.05 6.28 -52.49 -0.33 0.72 16 34 H 0.13 1.56 6.82 -52.49 -0.36 1.20 16 35 H 0.09 0.96 4.42 -51.93 -0.23 0.73 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 43 H 0.04 0.92 6.12 -51.93 -0.32 0.60 16 44 H 0.01 0.32 8.07 -51.93 -0.42 -0.10 16 45 H 0.38 10.99 7.43 -40.82 -0.30 10.68 16 46 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 47 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 48 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 389.40 15.07 5.87 5.87 Total: -1.00 -37.03 389.40 -9.21 -46.24 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.95 Total: 6.91 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -3.00 Total: -4.80 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.03 Total: -58.95 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.13 Total: -14.35 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.02 Total: 19.10 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.03 -9.21 -46.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484619084.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.354 kcal (2) G-P(sol) polarization free energy of solvation -37.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds