Wall clock time and date at job start Wed Apr 1 2020 01:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47237 * 2 1 4 4 N 1.46898 * 109.47223 * 120.00265 * 2 1 3 5 5 C 1.46902 * 111.00024 * 275.00049 * 4 2 1 6 6 C 1.53000 * 109.47022 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.46681 * 304.99637 * 6 5 4 8 8 O 1.42895 * 109.47406 * 64.99523 * 6 5 4 9 9 C 1.52992 * 109.47094 * 185.00167 * 6 5 4 10 10 O 1.42906 * 109.47469 * 174.99440 * 9 6 5 11 11 C 1.35672 * 117.00097 * 179.97438 * 10 9 6 12 12 C 1.39304 * 119.81956 * 359.73072 * 11 10 9 13 13 C 1.36439 * 120.18483 * 179.75504 * 12 11 10 14 14 C 1.40832 * 119.81115 * 0.51421 * 13 12 11 15 15 C 1.41211 * 120.17845 * 179.71708 * 14 13 12 16 16 H 1.07997 * 120.00305 * 24.56953 * 15 14 13 17 17 C 1.39902 * 119.99915 * 204.57447 * 15 14 13 18 18 N 1.30876 * 119.99815 * 17.92843 * 17 15 14 19 19 Si 1.86800 * 119.99988 * 197.93576 * 17 15 14 20 20 H 1.48497 * 109.47100 * 89.99487 * 19 17 15 21 21 H 1.48497 * 109.47243 * 210.00011 * 19 17 15 22 22 H 1.48506 * 109.47101 * 329.99755 * 19 17 15 23 23 C 1.40838 * 119.64158 * 359.74330 * 14 13 12 24 24 C 1.36438 * 119.80705 * 359.97438 * 23 14 13 25 25 C 1.50707 * 109.47147 * 240.00580 * 2 1 3 26 26 C 1.38225 * 119.61703 * 84.99851 * 25 2 1 27 27 C 1.38634 * 119.15657 * 179.97438 * 26 25 2 28 28 C 1.38673 * 118.42038 * 0.02562 * 27 26 25 29 29 C 1.38180 * 119.16574 * 359.97438 * 28 27 26 30 30 N 1.31852 * 119.61304 * 264.72332 * 25 2 1 31 31 H 1.09005 * 109.47010 * 59.99429 * 1 2 3 32 32 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47610 * 299.99602 * 1 2 3 34 34 H 1.00904 * 111.00067 * 151.04748 * 4 2 1 35 35 H 1.08999 * 109.46829 * 299.99591 * 5 4 2 36 36 H 1.09000 * 109.46844 * 60.00248 * 5 4 2 37 37 H 0.96707 * 113.99664 * 60.00670 * 8 6 5 38 38 H 1.08997 * 109.47400 * 294.99818 * 9 6 5 39 39 H 1.09001 * 109.47240 * 54.99656 * 9 6 5 40 40 H 1.08002 * 119.90734 * 0.02562 * 12 11 10 41 41 H 1.08008 * 120.09252 * 180.25383 * 13 12 11 42 42 H 0.97002 * 119.99721 * 179.97438 * 18 17 15 43 43 H 1.07997 * 120.09148 * 179.97438 * 23 14 13 44 44 H 1.08004 * 119.90345 * 179.97438 * 24 23 14 45 45 H 1.07993 * 120.42286 * 0.02562 * 26 25 2 46 46 H 1.07998 * 120.78523 * 180.02562 * 27 26 25 47 47 H 1.08002 * 120.41691 * 180.02562 * 28 27 26 48 48 H 1.07998 * 119.61460 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5962 -0.5330 3.5741 7 1 1.9708 -1.4084 3.7499 8 8 3.9445 -0.9486 3.3477 9 6 2.5439 0.3849 4.7969 10 8 2.9127 -0.3538 5.9633 11 6 2.9180 0.3182 7.1419 12 6 2.5786 1.6690 7.1707 13 6 2.5766 2.3508 8.3525 14 6 2.9296 1.6878 9.5438 15 6 2.9360 2.3875 10.7704 16 1 2.3216 3.2671 10.8936 17 6 3.7384 1.9413 11.8261 18 7 4.7273 1.1164 11.5929 19 14 3.3980 2.5227 13.5683 20 1 2.4471 1.5899 14.2246 21 1 4.6686 2.5559 14.3362 22 1 2.8077 3.8849 13.5292 23 6 3.2767 0.3235 9.5052 24 6 3.2680 -0.3451 8.3159 25 6 2.0323 -0.7103 -1.2306 26 6 2.1612 -0.0130 -2.4170 27 6 2.6248 -0.6757 -3.5431 28 6 2.9421 -2.0211 -3.4331 29 6 2.7875 -2.6520 -2.2135 30 7 2.3489 -1.9884 -1.1615 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 2.9173 -1.1205 1.0286 35 1 2.7588 1.0461 2.1182 36 1 1.0870 0.6161 2.5525 37 1 4.5585 -0.2196 3.1838 38 1 3.2369 1.2147 4.6582 39 1 1.5323 0.7726 4.9172 40 1 2.3120 2.1768 6.2556 41 1 2.3092 3.3970 8.3737 42 1 5.2839 0.8073 12.3248 43 1 3.5490 -0.1920 10.4143 44 1 3.5344 -1.3914 8.2844 45 1 1.9049 1.0350 -2.4661 46 1 2.7360 -0.1564 -4.4834 47 1 3.3064 -2.5688 -4.2898 48 1 3.0329 -3.6996 -2.1197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023675615.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:17 Heat of formation + Delta-G solvation = -32.752206 kcal Electronic energy + Delta-G solvation = -27846.301639 eV Core-core repulsion = 23866.083485 eV Total energy + Delta-G solvation = -3980.218154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.69518 -39.08477 -37.92110 -36.49073 -35.79328 -33.29752 -32.80078 -32.45669 -30.47606 -29.75866 -29.16387 -28.71472 -25.66555 -24.64515 -24.09911 -23.58250 -21.87732 -21.06955 -20.64654 -20.49078 -17.67324 -17.34196 -16.97872 -16.82220 -16.42498 -16.32914 -15.93067 -15.28856 -15.16715 -14.84050 -14.64081 -14.24873 -14.04291 -13.91066 -13.61905 -13.60749 -13.22406 -12.84295 -12.67947 -12.66772 -12.22713 -12.17894 -12.11589 -11.98713 -11.75055 -11.35436 -11.33789 -11.13920 -10.94437 -10.76672 -10.56374 -10.27248 -10.02395 -9.93274 -9.79875 -9.71923 -9.39640 -9.30943 -9.00712 -8.61856 -7.62197 -7.01024 -6.70414 -4.23738 0.68338 0.89409 2.79638 2.97098 3.09852 3.13055 3.23204 3.39535 3.53248 3.80845 3.96593 4.16611 4.39638 4.45606 4.46555 4.63712 4.66836 4.75806 4.84887 4.92942 5.00683 5.08882 5.16176 5.20475 5.29631 5.38191 5.40035 5.50303 5.59682 5.64484 5.69311 5.70705 5.75953 5.97035 6.07985 6.12142 6.25588 6.28545 6.73296 6.77089 6.99673 7.13143 7.20563 7.24177 7.48532 7.57699 7.67486 7.68255 7.81251 8.02577 8.22568 8.47846 8.67636 8.91742 9.00897 10.23991 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.037461 B = 0.001538 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.258391 B =18204.952224 C =18594.385280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.135 3.865 3 H 0.059 0.941 4 N -0.665 5.665 5 C 0.030 3.970 6 C 0.113 3.887 7 H 0.116 0.884 8 O -0.550 6.550 9 C 0.040 3.960 10 O -0.317 6.317 11 C -0.008 4.008 12 C -0.169 4.169 13 C -0.198 4.198 14 C 0.087 3.913 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.799 5.799 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.133 4.133 24 C -0.119 4.119 25 C 0.126 3.874 26 C -0.169 4.169 27 C -0.075 4.075 28 C -0.179 4.179 29 C 0.102 3.898 30 N -0.461 5.461 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.358 0.642 35 H 0.033 0.967 36 H 0.084 0.916 37 H 0.368 0.632 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.280 0.720 43 H 0.126 0.874 44 H 0.098 0.902 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 -1.968 -27.260 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.024 3.976 3 H 0.077 0.923 4 N -0.299 5.299 5 C -0.100 4.100 6 C 0.053 3.947 7 H 0.134 0.866 8 O -0.354 6.354 9 C -0.038 4.038 10 O -0.232 6.232 11 C -0.051 4.051 12 C -0.188 4.188 13 C -0.218 4.218 14 C 0.085 3.915 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.425 5.425 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.152 4.152 24 C -0.138 4.138 25 C -0.013 4.013 26 C -0.190 4.190 27 C -0.101 4.101 28 C -0.198 4.198 29 C -0.055 4.055 30 N -0.170 5.170 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.179 0.821 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.215 0.785 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.143 0.857 44 H 0.116 0.884 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.152 0.848 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.667 -3.559 -26.104 26.756 hybrid contribution 0.970 2.168 -0.498 2.427 sum -3.697 -1.391 -26.602 26.894 Atomic orbital electron populations 1.21781 0.92911 1.03107 1.01596 1.20424 0.96517 0.94467 0.86182 0.92350 1.60285 1.35383 1.31550 1.02686 1.22637 1.01703 0.93947 0.91726 1.21944 0.84161 0.98505 0.90050 0.86640 1.86665 1.18106 1.36918 1.93676 1.23090 0.99935 0.94606 0.86136 1.85895 1.85999 1.37972 1.13350 1.18628 1.10364 0.91529 0.84597 1.20391 1.07142 0.93484 0.97748 1.20548 1.11041 0.98076 0.92150 1.17600 0.90166 0.91582 0.92162 1.19464 1.22694 1.11221 0.96060 0.90567 1.25878 0.93252 0.93890 1.01172 1.69836 1.12081 1.26566 1.34001 0.86327 0.78641 0.80148 0.81655 1.19319 1.20401 1.18739 1.20984 1.03771 0.94409 0.96063 1.19852 1.04493 0.98619 0.90841 1.21326 0.94829 0.90504 0.94609 1.21923 1.01936 1.01512 0.93604 1.21567 0.95356 0.94557 0.98607 1.22191 1.02236 0.95752 0.99666 1.22868 0.94259 1.00258 0.88092 1.67508 1.09769 1.08066 1.31637 0.92567 0.91431 0.91720 0.82132 0.94864 0.89725 0.78540 0.93136 0.92357 0.88976 0.88806 0.90923 0.85666 0.88406 0.84876 0.84830 0.84804 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.40 37.15 0.35 -0.75 16 2 C 0.13 1.18 2.86 -68.87 -0.20 0.98 16 3 H 0.06 0.45 7.77 -51.93 -0.40 0.04 16 4 N -0.67 -7.01 6.05 -107.95 -0.65 -7.66 16 5 C 0.03 0.30 5.16 -3.82 -0.02 0.28 16 6 C 0.11 1.48 3.49 -26.74 -0.09 1.38 16 7 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 8 O -0.55 -7.64 12.82 -40.08 -0.51 -8.15 16 9 C 0.04 0.62 4.36 37.15 0.16 0.78 16 10 O -0.32 -6.63 10.09 -23.56 -0.24 -6.87 16 11 C -0.01 -0.19 6.71 -38.79 -0.26 -0.45 16 12 C -0.17 -3.85 8.96 -39.83 -0.36 -4.20 16 13 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 14 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 15 C -0.46 -12.43 9.04 -37.83 -0.34 -12.77 16 16 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 17 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 18 N -0.80 -20.90 10.96 55.55 0.61 -20.29 16 19 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 23 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 24 C -0.12 -2.96 9.92 -39.83 -0.40 -3.35 16 25 C 0.13 1.15 5.71 -82.59 -0.47 0.68 16 26 C -0.17 -1.20 9.77 -39.44 -0.39 -1.58 16 27 C -0.07 -0.45 10.18 -39.27 -0.40 -0.85 16 28 C -0.18 -1.10 10.11 -39.44 -0.40 -1.50 16 29 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 30 N -0.46 -4.79 9.28 -9.47 -0.09 -4.87 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 34 H 0.36 4.16 7.40 -39.29 -0.29 3.87 16 35 H 0.03 0.30 8.06 -51.93 -0.42 -0.12 16 36 H 0.08 0.80 7.44 -51.93 -0.39 0.41 16 37 H 0.37 3.86 9.05 45.56 0.41 4.28 16 38 H 0.05 0.75 7.63 -51.93 -0.40 0.35 16 39 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 40 H 0.09 1.80 6.27 -52.49 -0.33 1.47 16 41 H 0.09 2.17 8.06 -52.48 -0.42 1.74 16 42 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 43 H 0.13 3.39 6.16 -52.49 -0.32 3.07 16 44 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 45 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 47 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 48 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 399.91 15.07 6.03 6.03 Total: -1.00 -31.45 399.91 -10.57 -42.02 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.27 Total: 12.33 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -4.41 Total: -26.34 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: -0.13 Total: -32.83 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.75 Total: -15.02 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.45 -10.57 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023675615.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.269 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds