Wall clock time and date at job start Wed Apr 1 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47237 * 2 1 4 4 N 1.46898 * 109.47223 * 120.00265 * 2 1 3 5 5 C 1.46902 * 111.00024 * 275.00049 * 4 2 1 6 6 C 1.53000 * 109.47022 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.46681 * 304.99637 * 6 5 4 8 8 O 1.42895 * 109.47406 * 64.99523 * 6 5 4 9 9 C 1.52992 * 109.47094 * 185.00167 * 6 5 4 10 10 O 1.42906 * 109.47469 * 174.99440 * 9 6 5 11 11 C 1.35672 * 117.00097 * 179.97438 * 10 9 6 12 12 C 1.39304 * 119.81956 * 359.73072 * 11 10 9 13 13 C 1.36439 * 120.18483 * 179.75504 * 12 11 10 14 14 C 1.40832 * 119.81115 * 0.51421 * 13 12 11 15 15 C 1.41211 * 120.17845 * 179.71708 * 14 13 12 16 16 H 1.07997 * 120.00305 * 24.56953 * 15 14 13 17 17 C 1.39902 * 119.99915 * 204.57447 * 15 14 13 18 18 N 1.30876 * 119.99815 * 17.92843 * 17 15 14 19 19 Si 1.86800 * 119.99988 * 197.93576 * 17 15 14 20 20 H 1.48497 * 109.47100 * 89.99487 * 19 17 15 21 21 H 1.48497 * 109.47243 * 210.00011 * 19 17 15 22 22 H 1.48506 * 109.47101 * 329.99755 * 19 17 15 23 23 C 1.40838 * 119.64158 * 359.74330 * 14 13 12 24 24 C 1.36438 * 119.80705 * 359.97438 * 23 14 13 25 25 C 1.50707 * 109.47147 * 240.00580 * 2 1 3 26 26 C 1.38225 * 119.61703 * 84.99851 * 25 2 1 27 27 C 1.38634 * 119.15657 * 179.97438 * 26 25 2 28 28 C 1.38673 * 118.42038 * 0.02562 * 27 26 25 29 29 C 1.38180 * 119.16574 * 359.97438 * 28 27 26 30 30 N 1.31852 * 119.61304 * 264.72332 * 25 2 1 31 31 H 1.09005 * 109.47010 * 59.99429 * 1 2 3 32 32 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47610 * 299.99602 * 1 2 3 34 34 H 1.00904 * 111.00067 * 151.04748 * 4 2 1 35 35 H 1.08999 * 109.46829 * 299.99591 * 5 4 2 36 36 H 1.09000 * 109.46844 * 60.00248 * 5 4 2 37 37 H 0.96707 * 113.99664 * 60.00670 * 8 6 5 38 38 H 1.08997 * 109.47400 * 294.99818 * 9 6 5 39 39 H 1.09001 * 109.47240 * 54.99656 * 9 6 5 40 40 H 1.08002 * 119.90734 * 0.02562 * 12 11 10 41 41 H 1.08008 * 120.09252 * 180.25383 * 13 12 11 42 42 H 0.97002 * 119.99721 * 179.97438 * 18 17 15 43 43 H 1.07997 * 120.09148 * 179.97438 * 23 14 13 44 44 H 1.08004 * 119.90345 * 179.97438 * 24 23 14 45 45 H 1.07993 * 120.42286 * 0.02562 * 26 25 2 46 46 H 1.07998 * 120.78523 * 180.02562 * 27 26 25 47 47 H 1.08002 * 120.41691 * 180.02562 * 28 27 26 48 48 H 1.07998 * 119.61460 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5962 -0.5330 3.5741 7 1 1.9708 -1.4084 3.7499 8 8 3.9445 -0.9486 3.3477 9 6 2.5439 0.3849 4.7969 10 8 2.9127 -0.3538 5.9633 11 6 2.9180 0.3182 7.1419 12 6 2.5786 1.6690 7.1707 13 6 2.5766 2.3508 8.3525 14 6 2.9296 1.6878 9.5438 15 6 2.9360 2.3875 10.7704 16 1 2.3216 3.2671 10.8936 17 6 3.7384 1.9413 11.8261 18 7 4.7273 1.1164 11.5929 19 14 3.3980 2.5227 13.5683 20 1 2.4471 1.5899 14.2246 21 1 4.6686 2.5559 14.3362 22 1 2.8077 3.8849 13.5292 23 6 3.2767 0.3235 9.5052 24 6 3.2680 -0.3451 8.3159 25 6 2.0323 -0.7103 -1.2306 26 6 2.1612 -0.0130 -2.4170 27 6 2.6248 -0.6757 -3.5431 28 6 2.9421 -2.0211 -3.4331 29 6 2.7875 -2.6520 -2.2135 30 7 2.3489 -1.9884 -1.1615 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 2.9173 -1.1205 1.0286 35 1 2.7588 1.0461 2.1182 36 1 1.0870 0.6161 2.5525 37 1 4.5585 -0.2196 3.1838 38 1 3.2369 1.2147 4.6582 39 1 1.5323 0.7726 4.9172 40 1 2.3120 2.1768 6.2556 41 1 2.3092 3.3970 8.3737 42 1 5.2839 0.8073 12.3248 43 1 3.5490 -0.1920 10.4143 44 1 3.5344 -1.3914 8.2844 45 1 1.9049 1.0350 -2.4661 46 1 2.7360 -0.1564 -4.4834 47 1 3.3064 -2.5688 -4.2898 48 1 3.0329 -3.6996 -2.1197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023675615.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:16 Heat of formation + Delta-G solvation = -53.524659 kcal Electronic energy + Delta-G solvation = -27847.202400 eV Core-core repulsion = 23866.083485 eV Total energy + Delta-G solvation = -3981.118915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.24201 -40.64560 -39.15269 -37.92360 -36.85878 -35.17925 -33.34315 -33.19686 -31.88377 -31.12468 -30.75200 -29.82795 -26.98931 -26.09013 -24.77301 -24.28101 -23.13911 -22.44262 -22.23057 -21.55614 -19.25227 -18.79566 -18.08799 -17.63734 -17.38174 -17.31544 -17.03399 -16.60685 -16.06937 -15.93247 -15.72767 -15.42119 -15.35717 -15.12669 -14.86629 -14.46417 -14.17145 -14.07166 -13.93893 -13.82350 -13.59125 -13.39124 -13.23752 -13.04226 -12.83020 -12.79030 -12.62477 -12.57813 -12.38584 -11.98901 -11.88261 -11.69480 -11.58192 -11.23129 -11.00695 -10.87550 -10.78857 -10.29104 -9.92690 -9.56081 -9.35142 -8.92380 -8.59184 -6.22554 0.16754 0.40319 0.95099 1.02857 1.40099 1.53228 1.53372 2.23079 2.38684 2.72965 2.87164 3.16066 3.29668 3.46748 3.70420 3.82980 3.97373 4.02502 4.03066 4.07817 4.20068 4.27789 4.29584 4.31600 4.34931 4.36761 4.45215 4.47616 4.64424 4.66709 4.82027 4.86382 4.88357 4.96783 5.05019 5.09162 5.21030 5.22095 5.28778 5.28962 5.33179 5.59088 5.64597 5.80477 5.88695 6.05069 6.06164 6.26507 6.40984 6.57015 6.76921 6.82821 6.95318 7.10834 7.13071 8.37437 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.037461 B = 0.001538 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.258391 B =18204.952224 C =18594.385280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.135 3.865 3 H 0.074 0.926 4 N -0.678 5.678 5 C 0.041 3.959 6 C 0.123 3.877 7 H 0.096 0.904 8 O -0.568 6.568 9 C 0.032 3.968 10 O -0.332 6.332 11 C 0.000 4.000 12 C -0.165 4.165 13 C -0.206 4.206 14 C 0.053 3.947 15 C -0.499 4.499 16 H 0.077 0.923 17 C 0.033 3.967 18 N -0.832 5.832 19 Si 0.983 3.017 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.257 1.257 23 C -0.152 4.152 24 C -0.136 4.136 25 C 0.104 3.896 26 C -0.172 4.172 27 C -0.077 4.077 28 C -0.175 4.175 29 C 0.081 3.919 30 N -0.498 5.498 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.349 0.651 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.383 0.617 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.287 0.713 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.154 0.846 46 H 0.163 0.837 47 H 0.160 0.840 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 -0.391 -29.330 29.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.024 3.976 3 H 0.092 0.908 4 N -0.311 5.311 5 C -0.089 4.089 6 C 0.063 3.937 7 H 0.114 0.886 8 O -0.375 6.375 9 C -0.044 4.044 10 O -0.248 6.248 11 C -0.044 4.044 12 C -0.183 4.183 13 C -0.226 4.226 14 C 0.051 3.949 15 C -0.529 4.529 16 H 0.095 0.905 17 C -0.181 4.181 18 N -0.459 5.459 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.181 1.181 23 C -0.172 4.172 24 C -0.155 4.155 25 C -0.034 4.034 26 C -0.192 4.192 27 C -0.103 4.103 28 C -0.195 4.195 29 C -0.076 4.076 30 N -0.208 5.208 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.169 0.831 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.231 0.769 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.148 0.852 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.172 0.828 46 H 0.180 0.820 47 H 0.178 0.822 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.060 -1.974 -28.210 28.728 hybrid contribution 1.106 1.605 -0.094 1.952 sum -3.954 -0.369 -28.304 28.581 Atomic orbital electron populations 1.21747 0.92695 1.01930 1.02552 1.20497 0.96613 0.94982 0.85467 0.90801 1.60263 1.34959 1.32273 1.03630 1.22507 1.02443 0.93722 0.90181 1.21824 0.83829 0.97620 0.90403 0.88636 1.86631 1.18824 1.38315 1.93706 1.23473 1.00932 0.95326 0.84709 1.85888 1.85957 1.39141 1.13830 1.18701 1.08608 0.91807 0.85254 1.20705 1.05827 0.93197 0.98586 1.20809 1.10687 0.98878 0.92224 1.17967 0.91408 0.92040 0.93450 1.19723 1.23915 1.12050 0.97219 0.90482 1.26752 0.92420 0.93756 1.05160 1.69896 1.12843 1.27579 1.35578 0.85193 0.78720 0.79737 0.75975 1.18837 1.19409 1.18087 1.20894 1.05387 0.94705 0.96196 1.20013 1.04988 0.99160 0.91298 1.21460 0.95928 0.90501 0.95489 1.22187 1.01397 1.02495 0.93164 1.21979 0.94284 0.94585 0.99458 1.22497 1.01140 0.96158 0.99677 1.23179 0.94817 1.00983 0.88620 1.67432 1.11107 1.09111 1.33130 0.90900 0.93614 0.91429 0.83072 0.93074 0.88713 0.76855 0.91657 0.90954 0.85153 0.87468 0.90234 0.87309 0.87738 0.82814 0.81959 0.82234 0.81616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.40 71.98 0.68 -1.29 16 2 C 0.13 2.17 2.86 44.17 0.13 2.29 16 3 H 0.07 0.94 7.77 -2.38 -0.02 0.92 16 4 N -0.68 -13.68 6.05 -495.45 -3.00 -16.68 16 5 C 0.04 0.74 5.16 86.30 0.44 1.19 16 6 C 0.12 3.06 3.49 30.59 0.11 3.16 16 7 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 8 O -0.57 -15.29 12.82 -144.35 -1.85 -17.14 16 9 C 0.03 0.92 4.36 71.98 0.31 1.24 16 10 O -0.33 -13.58 10.09 -85.26 -0.86 -14.44 16 11 C 0.00 0.01 6.71 22.78 0.15 0.16 16 12 C -0.16 -7.24 8.96 22.11 0.20 -7.04 16 13 C -0.21 -10.16 9.74 22.48 0.22 -9.94 16 14 C 0.05 2.95 5.57 -21.28 -0.12 2.84 16 15 C -0.50 -27.30 9.04 23.40 0.21 -27.09 16 16 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 17 C 0.03 1.69 5.13 85.24 0.44 2.13 16 18 N -0.83 -44.64 10.96 21.82 0.24 -44.40 16 19 Si 0.98 38.82 29.60 68.60 2.03 40.85 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 23 C -0.15 -8.37 8.64 22.49 0.19 -8.18 16 24 C -0.14 -6.88 9.92 22.11 0.22 -6.66 16 25 C 0.10 1.80 5.71 42.55 0.24 2.04 16 26 C -0.17 -2.07 9.77 22.36 0.22 -1.85 16 27 C -0.08 -0.73 10.18 22.47 0.23 -0.50 16 28 C -0.18 -1.84 10.11 22.36 0.23 -1.61 16 29 C 0.08 1.25 11.18 84.67 0.95 2.20 16 30 N -0.50 -10.31 9.28 -183.88 -1.71 -12.01 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.94 7.45 -2.39 -0.02 0.93 16 34 H 0.35 8.04 7.40 -89.69 -0.66 7.38 16 35 H 0.05 0.76 8.06 -2.39 -0.02 0.74 16 36 H 0.09 1.54 7.44 -2.39 -0.02 1.52 16 37 H 0.38 7.49 9.05 -74.05 -0.67 6.82 16 38 H 0.07 1.72 7.63 -2.39 -0.02 1.71 16 39 H 0.07 1.92 7.66 -2.39 -0.02 1.90 16 40 H 0.13 4.64 6.27 -2.91 -0.02 4.63 16 41 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 43 H 0.11 6.21 6.16 -2.91 -0.02 6.19 16 44 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 45 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 46 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 47 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 48 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -69.93 399.91 -0.45 -70.38 By element: Atomic # 1 Polarization: 40.72 SS G_CDS: -0.35 Total: 40.37 kcal Atomic # 6 Polarization: -51.97 SS G_CDS: 5.05 Total: -46.92 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -4.46 Total: -73.09 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -2.71 Total: -31.58 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -69.93 -0.45 -70.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023675615.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.851 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds