Wall clock time and date at job start Wed Apr 1 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47470 * 2 1 4 4 C 1.50694 * 109.47263 * 120.00527 * 2 1 3 5 5 C 1.38238 * 119.99973 * 336.12779 * 4 2 1 6 6 C 1.38232 * 120.00044 * 179.76546 * 5 4 2 7 7 C 1.38232 * 120.00063 * 0.50839 * 6 5 4 8 8 C 1.38238 * 119.99928 * 359.74158 * 7 6 5 9 9 C 1.38236 * 120.00049 * 0.02562 * 8 7 6 10 10 N 1.46508 * 109.46443 * 240.00369 * 2 1 3 11 11 C 1.46761 * 124.34727 * 120.03185 * 10 2 1 12 12 C 1.54481 * 105.47227 * 197.03371 * 11 10 2 13 13 H 1.09001 * 110.99769 * 216.45141 * 12 11 10 14 14 C 1.50697 * 110.97148 * 92.70258 * 12 11 10 15 15 O 1.21290 * 119.99775 * 358.93555 * 14 12 11 16 16 N 1.34771 * 119.99982 * 178.93830 * 14 12 11 17 17 C 1.37102 * 120.00092 * 183.91755 * 16 14 12 18 18 H 1.08005 * 120.00079 * 134.60861 * 17 16 14 19 19 C 1.38947 * 120.00219 * 314.61750 * 17 16 14 20 20 N 1.31414 * 119.99955 * 340.34696 * 19 17 16 21 21 Si 1.86795 * 120.00243 * 160.34526 * 19 17 16 22 22 H 1.48507 * 109.47128 * 60.00041 * 21 19 17 23 23 H 1.48500 * 109.47430 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47602 * 299.99984 * 21 19 17 25 25 C 1.46504 * 120.00181 * 3.92191 * 16 14 12 26 26 C 1.53002 * 117.49952 * 177.02642 * 25 16 14 27 27 C 1.52997 * 117.49713 * 245.68412 * 25 16 14 28 28 C 1.54631 * 101.76403 * 334.57950 * 12 11 10 29 29 C 1.34419 * 124.34917 * 300.04857 * 10 2 1 30 30 O 1.21279 * 124.94225 * 359.61014 * 29 10 2 31 31 H 1.09005 * 109.46568 * 300.00036 * 1 2 3 32 32 H 1.09003 * 109.47113 * 59.99241 * 1 2 3 33 33 H 1.08996 * 109.47470 * 179.97438 * 1 2 3 34 34 H 1.08007 * 119.99821 * 359.97438 * 5 4 2 35 35 H 1.07997 * 120.00301 * 180.22717 * 6 5 4 36 36 H 1.08003 * 120.00387 * 179.72156 * 7 6 5 37 37 H 1.08001 * 120.00458 * 179.97438 * 8 7 6 38 38 H 1.08001 * 120.00299 * 179.97438 * 9 8 7 39 39 H 1.09002 * 110.24976 * 78.02976 * 11 10 2 40 40 H 1.09004 * 110.24550 * 316.03371 * 11 10 2 41 41 H 0.96995 * 119.99882 * 185.04204 * 20 19 17 42 42 H 1.08998 * 115.54894 * 31.35581 * 25 16 14 43 43 H 1.08996 * 117.50079 * 215.00483 * 26 25 16 44 44 H 1.09006 * 117.49622 * 0.02562 * 26 25 16 45 45 H 1.09007 * 117.49901 * 359.97438 * 27 25 16 46 46 H 1.09000 * 117.49623 * 144.97140 * 27 25 16 47 47 H 1.08998 * 110.48450 * 143.47437 * 28 12 11 48 48 H 1.08997 * 110.49047 * 266.12232 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 1.2307 -0.7993 2.3530 6 6 1.6896 -1.4552 3.4799 7 6 2.9543 -2.0133 3.4879 8 6 3.7580 -1.9200 2.3671 9 6 3.2972 -1.2682 1.2384 10 7 2.0183 -0.6906 -1.1963 11 6 2.8660 -0.0714 -2.2219 12 6 2.7606 -0.9945 -3.4561 13 1 3.7135 -1.0535 -3.9821 14 6 1.6642 -0.5343 -4.3818 15 8 0.9941 0.4347 -4.0936 16 7 1.4283 -1.1994 -5.5300 17 6 0.4857 -0.7346 -6.4103 18 1 0.7081 -0.6904 -7.4663 19 6 -0.7559 -0.3201 -5.9440 20 7 -1.1799 -0.7147 -4.7644 21 14 -1.8222 0.7981 -6.9938 22 1 -2.1292 0.1239 -8.2809 23 1 -3.0881 1.0923 -6.2754 24 1 -1.0973 2.0665 -7.2600 25 6 2.1791 -2.4193 -5.8375 26 6 1.8170 -3.1668 -7.1224 27 6 3.1280 -2.3813 -7.0371 28 6 2.4028 -2.3509 -2.8056 29 6 1.7470 -1.9726 -1.4957 30 8 1.0741 -2.7175 -0.8152 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 0.2444 -0.3591 2.3484 35 1 1.0619 -1.5278 4.3557 36 1 3.3146 -2.5218 4.3699 37 1 4.7462 -2.3556 2.3734 38 1 3.9253 -1.1949 0.3629 39 1 3.8986 -0.0193 -1.8768 40 1 2.4977 0.9256 -2.4641 41 1 -2.0753 -0.4861 -4.4696 42 1 2.4803 -3.0156 -4.9762 43 1 1.8799 -4.2549 -7.1064 44 1 1.0204 -2.7507 -7.7392 45 1 3.1933 -1.4488 -7.5978 46 1 4.0537 -2.9523 -6.9648 47 1 1.7058 -2.9039 -3.4353 48 1 3.3038 -2.9374 -2.6258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299727264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:05 Heat of formation + Delta-G solvation = 12.281106 kcal Electronic energy + Delta-G solvation = -31209.879095 eV Core-core repulsion = 27231.613732 eV Total energy + Delta-G solvation = -3978.265363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.59804 -39.11382 -38.19732 -36.33125 -35.55339 -34.30436 -32.77406 -31.26582 -30.86948 -30.14810 -28.63152 -27.19486 -25.32279 -24.03031 -22.62152 -22.28321 -21.66892 -21.29259 -20.88139 -19.25013 -18.59715 -17.31609 -16.77484 -16.28962 -16.07500 -15.30523 -15.21327 -14.84219 -14.67717 -14.36232 -14.29474 -13.82138 -13.68952 -13.55459 -13.50731 -13.16331 -12.95385 -12.63315 -12.47611 -12.17444 -12.00268 -11.75652 -11.62389 -11.55871 -11.29130 -11.08857 -10.96439 -10.85819 -10.84028 -10.80151 -10.68723 -10.55900 -10.22952 -9.97877 -9.75948 -9.25323 -8.84337 -8.71674 -8.62997 -8.27417 -8.06655 -7.06442 -6.11736 -3.89676 1.40709 1.47955 3.10319 3.29010 3.35606 3.36511 3.38943 3.90309 3.96198 4.21714 4.63307 4.69698 4.74769 4.84435 4.94159 5.02188 5.03802 5.13908 5.18713 5.31788 5.38678 5.42083 5.46353 5.54442 5.56678 5.66355 5.73986 5.74440 5.79033 5.84236 5.95290 6.04509 6.10304 6.12191 6.18720 6.20426 6.25039 6.33452 6.44771 6.50570 6.54431 6.58972 6.70304 6.71711 6.91066 7.00870 7.06632 7.57855 7.60323 8.24934 8.68884 9.02957 9.09883 9.62665 10.22396 10.95697 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.003642 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.645824 B = 7686.694900 C = 8756.002192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.199 3.801 3 H 0.097 0.903 4 C -0.080 4.080 5 C -0.108 4.108 6 C -0.121 4.121 7 C -0.127 4.127 8 C -0.122 4.122 9 C -0.104 4.104 10 N -0.605 5.605 11 C 0.120 3.880 12 C -0.119 4.119 13 H 0.105 0.895 14 C 0.489 3.511 15 O -0.524 6.524 16 N -0.422 5.422 17 C -0.356 4.356 18 H 0.077 0.923 19 C 0.079 3.921 20 N -0.825 5.825 21 Si 0.910 3.090 22 H -0.279 1.279 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.066 3.934 26 C -0.173 4.173 27 C -0.207 4.207 28 C -0.149 4.149 29 C 0.531 3.469 30 O -0.530 6.530 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.264 0.736 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.800 -1.447 9.795 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.097 3.903 3 H 0.115 0.885 4 C -0.081 4.081 5 C -0.127 4.127 6 C -0.139 4.139 7 C -0.145 4.145 8 C -0.140 4.140 9 C -0.122 4.122 10 N -0.339 5.339 11 C -0.003 4.003 12 C -0.141 4.141 13 H 0.123 0.877 14 C 0.275 3.725 15 O -0.402 6.402 16 N -0.142 5.142 17 C -0.482 4.482 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.457 5.457 21 Si 0.737 3.263 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.040 4.040 26 C -0.211 4.211 27 C -0.246 4.246 28 C -0.189 4.189 29 C 0.319 3.681 30 O -0.407 6.407 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.125 0.875 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.128 0.872 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.902 -1.212 10.536 14.509 hybrid contribution -0.531 0.309 -0.642 0.888 sum 9.370 -0.904 9.894 13.657 Atomic orbital electron populations 1.22213 0.93821 1.04046 1.02247 1.19640 0.94805 0.94848 0.81024 0.88538 1.20197 0.94259 0.98563 0.95108 1.21104 0.99472 0.99302 0.92797 1.21086 0.96104 0.98573 0.98184 1.21083 0.94737 1.00397 0.98276 1.21072 0.99724 0.99666 0.93525 1.20928 0.95550 0.97830 0.97906 1.48175 1.51356 1.12152 1.22227 1.21978 0.93369 0.98903 0.86079 1.22342 1.01127 0.94691 0.95986 0.87735 1.19393 0.85075 0.84756 0.83231 1.90534 1.48695 1.28282 1.72663 1.42660 1.33957 1.18749 1.18834 1.18765 0.93389 1.46060 0.90008 0.90552 1.25229 0.96620 0.96045 0.95431 1.69836 1.16943 1.40016 1.18902 0.86321 0.79046 0.81488 0.79406 1.20437 1.21275 1.19986 1.21949 0.98838 0.91666 0.91522 1.23067 0.98835 0.97251 1.01909 1.23321 0.93603 1.02475 1.05231 1.22451 1.02587 0.98028 0.95842 1.20654 0.79437 0.81472 0.86488 1.90661 1.39284 1.54931 1.55789 0.91943 0.91025 0.90816 0.85684 0.86310 0.86511 0.86429 0.86457 0.91697 0.88793 0.92559 0.87512 0.89795 0.87474 0.89117 0.89796 0.87178 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 8.31 37.16 0.31 -2.44 16 2 C 0.20 3.07 3.27 -69.08 -0.23 2.84 16 3 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 4 C -0.08 -1.17 4.83 -104.63 -0.50 -1.67 16 5 C -0.11 -1.46 9.13 -39.58 -0.36 -1.82 16 6 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 7 C -0.13 -1.47 10.05 -39.58 -0.40 -1.86 16 8 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 9 C -0.10 -1.42 9.01 -39.58 -0.36 -1.78 16 10 N -0.61 -10.24 2.03 -166.15 -0.34 -10.58 16 11 C 0.12 1.85 6.62 -3.12 -0.02 1.83 16 12 C -0.12 -2.03 2.70 -90.14 -0.24 -2.27 16 13 H 0.10 1.46 8.07 -51.93 -0.42 1.04 16 14 C 0.49 11.35 6.39 -10.99 -0.07 11.28 16 15 O -0.52 -14.27 13.25 5.55 0.07 -14.19 16 16 N -0.42 -9.92 2.82 -107.73 -0.30 -10.22 16 17 C -0.36 -9.34 7.89 -14.93 -0.12 -9.46 16 18 H 0.08 1.95 7.31 -52.48 -0.38 1.57 16 19 C 0.08 2.15 4.34 -17.47 -0.08 2.07 16 20 N -0.82 -24.00 11.83 55.50 0.66 -23.34 16 21 Si 0.91 21.61 29.60 -169.99 -5.03 16.58 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 25 C 0.07 1.24 5.41 -67.93 -0.37 0.88 16 26 C -0.17 -3.01 9.81 -26.69 -0.26 -3.27 16 27 C -0.21 -3.30 10.36 -26.70 -0.28 -3.57 16 28 C -0.15 -2.51 5.19 -26.74 -0.14 -2.65 16 29 C 0.53 10.27 7.08 -10.86 -0.08 10.19 16 30 O -0.53 -11.92 15.98 5.56 0.09 -11.83 16 31 H 0.06 0.83 6.59 -51.93 -0.34 0.49 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.43 6.79 -51.93 -0.35 1.08 16 34 H 0.13 1.53 6.03 -52.48 -0.32 1.21 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.52 7.60 -52.49 -0.40 1.12 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.61 7.03 -51.93 -0.37 1.25 16 41 H 0.26 7.51 8.32 -40.82 -0.34 7.17 16 42 H 0.11 1.79 5.01 -51.93 -0.26 1.53 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.11 2.09 6.74 -51.93 -0.35 1.74 16 45 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.11 2.13 6.10 -51.93 -0.32 1.81 16 48 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -34.16 384.01 -9.92 -44.07 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.87 Total: 9.17 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -3.98 Total: -5.44 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.01 Total: -44.14 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: 0.16 Total: -26.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.16 -9.92 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299727264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.352 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds