Wall clock time and date at job start Wed Apr 1 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47470 * 2 1 4 4 C 1.50694 * 109.47263 * 120.00527 * 2 1 3 5 5 C 1.38238 * 119.99973 * 336.12779 * 4 2 1 6 6 C 1.38232 * 120.00044 * 179.76546 * 5 4 2 7 7 C 1.38232 * 120.00063 * 0.50839 * 6 5 4 8 8 C 1.38238 * 119.99928 * 359.74158 * 7 6 5 9 9 C 1.38236 * 120.00049 * 0.02562 * 8 7 6 10 10 N 1.46508 * 109.46443 * 240.00369 * 2 1 3 11 11 C 1.46761 * 124.34727 * 120.03185 * 10 2 1 12 12 C 1.54481 * 105.47227 * 197.03371 * 11 10 2 13 13 H 1.09001 * 110.99769 * 216.45141 * 12 11 10 14 14 C 1.50697 * 110.97148 * 92.70258 * 12 11 10 15 15 O 1.21290 * 119.99775 * 358.93555 * 14 12 11 16 16 N 1.34771 * 119.99982 * 178.93830 * 14 12 11 17 17 C 1.37102 * 120.00092 * 183.91755 * 16 14 12 18 18 H 1.08005 * 120.00079 * 134.60861 * 17 16 14 19 19 C 1.38947 * 120.00219 * 314.61750 * 17 16 14 20 20 N 1.31414 * 119.99955 * 340.34696 * 19 17 16 21 21 Si 1.86795 * 120.00243 * 160.34526 * 19 17 16 22 22 H 1.48507 * 109.47128 * 60.00041 * 21 19 17 23 23 H 1.48500 * 109.47430 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47602 * 299.99984 * 21 19 17 25 25 C 1.46504 * 120.00181 * 3.92191 * 16 14 12 26 26 C 1.53002 * 117.49952 * 177.02642 * 25 16 14 27 27 C 1.52997 * 117.49713 * 245.68412 * 25 16 14 28 28 C 1.54631 * 101.76403 * 334.57950 * 12 11 10 29 29 C 1.34419 * 124.34917 * 300.04857 * 10 2 1 30 30 O 1.21279 * 124.94225 * 359.61014 * 29 10 2 31 31 H 1.09005 * 109.46568 * 300.00036 * 1 2 3 32 32 H 1.09003 * 109.47113 * 59.99241 * 1 2 3 33 33 H 1.08996 * 109.47470 * 179.97438 * 1 2 3 34 34 H 1.08007 * 119.99821 * 359.97438 * 5 4 2 35 35 H 1.07997 * 120.00301 * 180.22717 * 6 5 4 36 36 H 1.08003 * 120.00387 * 179.72156 * 7 6 5 37 37 H 1.08001 * 120.00458 * 179.97438 * 8 7 6 38 38 H 1.08001 * 120.00299 * 179.97438 * 9 8 7 39 39 H 1.09002 * 110.24976 * 78.02976 * 11 10 2 40 40 H 1.09004 * 110.24550 * 316.03371 * 11 10 2 41 41 H 0.96995 * 119.99882 * 185.04204 * 20 19 17 42 42 H 1.08998 * 115.54894 * 31.35581 * 25 16 14 43 43 H 1.08996 * 117.50079 * 215.00483 * 26 25 16 44 44 H 1.09006 * 117.49622 * 0.02562 * 26 25 16 45 45 H 1.09007 * 117.49901 * 359.97438 * 27 25 16 46 46 H 1.09000 * 117.49623 * 144.97140 * 27 25 16 47 47 H 1.08998 * 110.48450 * 143.47437 * 28 12 11 48 48 H 1.08997 * 110.49047 * 266.12232 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 1.2307 -0.7993 2.3530 6 6 1.6896 -1.4552 3.4799 7 6 2.9543 -2.0133 3.4879 8 6 3.7580 -1.9200 2.3671 9 6 3.2972 -1.2682 1.2384 10 7 2.0183 -0.6906 -1.1963 11 6 2.8660 -0.0714 -2.2219 12 6 2.7606 -0.9945 -3.4561 13 1 3.7135 -1.0535 -3.9821 14 6 1.6642 -0.5343 -4.3818 15 8 0.9941 0.4347 -4.0936 16 7 1.4283 -1.1994 -5.5300 17 6 0.4857 -0.7346 -6.4103 18 1 0.7081 -0.6904 -7.4663 19 6 -0.7559 -0.3201 -5.9440 20 7 -1.1799 -0.7147 -4.7644 21 14 -1.8222 0.7981 -6.9938 22 1 -2.1292 0.1239 -8.2809 23 1 -3.0881 1.0923 -6.2754 24 1 -1.0973 2.0665 -7.2600 25 6 2.1791 -2.4193 -5.8375 26 6 1.8170 -3.1668 -7.1224 27 6 3.1280 -2.3813 -7.0371 28 6 2.4028 -2.3509 -2.8056 29 6 1.7470 -1.9726 -1.4957 30 8 1.0741 -2.7175 -0.8152 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 0.2444 -0.3591 2.3484 35 1 1.0619 -1.5278 4.3557 36 1 3.3146 -2.5218 4.3699 37 1 4.7462 -2.3556 2.3734 38 1 3.9253 -1.1949 0.3629 39 1 3.8986 -0.0193 -1.8768 40 1 2.4977 0.9256 -2.4641 41 1 -2.0753 -0.4861 -4.4696 42 1 2.4803 -3.0156 -4.9762 43 1 1.8799 -4.2549 -7.1064 44 1 1.0204 -2.7507 -7.7392 45 1 3.1933 -1.4488 -7.5978 46 1 4.0537 -2.9523 -6.9648 47 1 1.7058 -2.9039 -3.4353 48 1 3.3038 -2.9374 -2.6258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299727264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:04 Heat of formation + Delta-G solvation = -7.198877 kcal Electronic energy + Delta-G solvation = -31210.723810 eV Core-core repulsion = 27231.613732 eV Total energy + Delta-G solvation = -3979.110079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.96047 -40.38806 -39.59963 -37.87902 -37.05635 -35.61127 -34.64858 -32.90088 -31.99675 -31.39285 -29.85265 -28.56584 -27.17803 -25.26969 -24.14070 -23.24772 -22.99028 -22.55798 -22.27574 -20.89558 -19.96792 -18.72612 -18.05366 -17.86314 -17.47697 -16.86874 -16.49953 -16.40937 -15.96098 -15.78413 -15.56423 -15.36961 -15.07912 -14.97515 -14.72245 -14.50949 -14.30232 -13.96655 -13.78053 -13.57940 -13.32717 -13.25709 -13.06640 -12.84963 -12.79549 -12.74943 -12.69958 -12.31879 -12.30022 -12.16961 -12.08783 -11.85129 -11.78558 -11.58874 -11.15749 -10.69133 -10.67876 -9.88469 -9.79374 -9.73365 -9.49218 -8.92077 -8.17109 -5.96297 0.44399 0.53844 1.34623 1.42305 1.45652 1.65828 2.11681 2.24186 2.39823 2.92629 3.04977 3.15973 3.33789 3.44210 3.59265 3.75770 3.90867 3.94684 4.05672 4.10840 4.19826 4.20886 4.25175 4.28194 4.32697 4.45260 4.52363 4.60575 4.62371 4.66677 4.71055 4.74594 4.83899 4.93805 4.95521 5.02326 5.08373 5.11261 5.16938 5.18622 5.34362 5.49420 5.53212 5.58886 5.59472 5.63404 5.78044 6.14529 6.21770 6.23483 7.07786 7.22705 7.26644 7.75808 8.39846 8.88713 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.003642 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.645824 B = 7686.694900 C = 8756.002192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.195 3.805 3 H 0.115 0.885 4 C -0.097 4.097 5 C -0.128 4.128 6 C -0.128 4.128 7 C -0.129 4.129 8 C -0.126 4.126 9 C -0.117 4.117 10 N -0.602 5.602 11 C 0.120 3.880 12 C -0.107 4.107 13 H 0.149 0.851 14 C 0.475 3.525 15 O -0.578 6.578 16 N -0.441 5.441 17 C -0.357 4.357 18 H 0.076 0.924 19 C 0.028 3.972 20 N -0.865 5.865 21 Si 0.962 3.038 22 H -0.259 1.259 23 H -0.294 1.294 24 H -0.279 1.279 25 C 0.039 3.961 26 C -0.181 4.181 27 C -0.172 4.172 28 C -0.139 4.139 29 C 0.517 3.483 30 O -0.574 6.574 31 H 0.092 0.908 32 H 0.035 0.965 33 H 0.040 0.960 34 H 0.127 0.873 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.128 0.872 47 H 0.083 0.917 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.417 -2.481 10.347 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.093 3.907 3 H 0.132 0.868 4 C -0.098 4.098 5 C -0.146 4.146 6 C -0.145 4.145 7 C -0.146 4.146 8 C -0.144 4.144 9 C -0.135 4.135 10 N -0.334 5.334 11 C -0.002 4.002 12 C -0.129 4.129 13 H 0.167 0.833 14 C 0.263 3.737 15 O -0.459 6.459 16 N -0.161 5.161 17 C -0.485 4.485 18 H 0.094 0.906 19 C -0.178 4.178 20 N -0.500 5.500 21 Si 0.788 3.212 22 H -0.184 1.184 23 H -0.220 1.220 24 H -0.205 1.205 25 C -0.065 4.065 26 C -0.218 4.218 27 C -0.211 4.211 28 C -0.179 4.179 29 C 0.306 3.694 30 O -0.454 6.454 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.148 0.852 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.146 0.854 47 H 0.102 0.898 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.558 -2.245 11.036 17.626 hybrid contribution -1.607 0.621 -0.838 1.916 sum 11.951 -1.624 10.199 15.795 Atomic orbital electron populations 1.22090 0.95539 1.01666 1.01927 1.19760 0.93467 0.96014 0.81461 0.86765 1.20130 0.95227 0.99748 0.94708 1.21283 0.99717 1.00189 0.93407 1.21415 0.96857 0.97891 0.98380 1.21488 0.94315 0.99675 0.99162 1.21425 1.00920 0.98997 0.93052 1.21096 0.95288 0.98212 0.98918 1.48305 1.50900 1.11568 1.22642 1.22167 0.95619 0.97177 0.85247 1.22304 1.00307 0.94822 0.95439 0.83342 1.20454 0.85672 0.84006 0.83535 1.90502 1.50871 1.30597 1.73889 1.42910 1.33905 1.20523 1.18734 1.18989 0.93714 1.45172 0.90589 0.90595 1.25966 0.98199 0.97289 0.96373 1.69974 1.16758 1.42330 1.20947 0.85495 0.77228 0.79728 0.78749 1.18387 1.22008 1.20460 1.22238 1.00325 0.90650 0.93313 1.23113 0.99284 0.98946 1.00504 1.23338 0.94347 1.01781 1.01625 1.22446 1.03711 0.98023 0.93738 1.21159 0.79189 0.81979 0.87100 1.90627 1.41236 1.56238 1.57299 0.88909 0.94552 0.94072 0.85545 0.84100 0.83674 0.83887 0.85768 0.86364 0.90934 0.93734 0.85169 0.86931 0.90475 0.90533 0.85391 0.89843 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 8.31 71.98 0.60 -4.88 16 2 C 0.20 6.07 3.27 44.24 0.14 6.22 16 3 H 0.11 3.06 8.07 -2.39 -0.02 3.04 16 4 C -0.10 -2.77 4.83 -19.87 -0.10 -2.87 16 5 C -0.13 -3.39 9.13 22.27 0.20 -3.18 16 6 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 7 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 8 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 9 C -0.12 -2.97 9.01 22.27 0.20 -2.77 16 10 N -0.60 -20.14 2.03 -798.18 -1.62 -21.77 16 11 C 0.12 3.49 6.62 86.83 0.58 4.07 16 12 C -0.11 -3.41 2.70 -10.48 -0.03 -3.44 16 13 H 0.15 3.44 8.07 -2.39 -0.02 3.42 16 14 C 0.47 22.21 6.39 87.66 0.56 22.77 16 15 O -0.58 -32.70 13.25 -3.06 -0.04 -32.74 16 16 N -0.44 -20.80 2.82 -613.13 -1.73 -22.53 16 17 C -0.36 -19.21 7.89 84.04 0.66 -18.54 16 18 H 0.08 3.97 7.31 -2.91 -0.02 3.95 16 19 C 0.03 1.62 4.34 84.93 0.37 1.99 16 20 N -0.87 -53.16 11.83 21.66 0.26 -52.90 16 21 Si 0.96 46.03 29.60 68.60 2.03 48.06 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 25 C 0.04 1.41 5.41 44.99 0.24 1.65 16 26 C -0.18 -5.97 9.81 30.62 0.30 -5.67 16 27 C -0.17 -4.89 10.36 30.62 0.32 -4.57 16 28 C -0.14 -4.43 5.19 30.59 0.16 -4.27 16 29 C 0.52 19.93 7.08 87.90 0.62 20.55 16 30 O -0.57 -26.52 15.98 -3.03 -0.05 -26.57 16 31 H 0.09 2.59 6.59 -2.38 -0.02 2.58 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.71 6.79 -2.39 -0.02 1.69 16 34 H 0.13 3.13 6.03 -2.91 -0.02 3.11 16 35 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.12 2.87 7.60 -2.91 -0.02 2.84 16 39 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.07 2.47 7.03 -2.38 -0.02 2.46 16 41 H 0.25 15.41 8.32 -92.71 -0.77 14.64 16 42 H 0.13 4.00 5.01 -2.39 -0.01 3.98 16 43 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.08 3.02 6.74 -2.38 -0.02 3.00 16 45 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 46 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.08 3.17 6.10 -2.39 -0.01 3.16 16 48 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -81.77 384.01 5.32 -76.45 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.97 Total: 32.46 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.50 Total: -0.46 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -3.10 Total: -97.20 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.09 Total: -59.31 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -81.77 5.32 -76.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299727264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.250 kcal (2) G-P(sol) polarization free energy of solvation -81.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds