Wall clock time and date at job start Wed Apr 1 2020 01:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47187 * 2 1 4 4 C 1.50704 * 109.46910 * 240.00113 * 2 1 3 5 5 C 1.38237 * 119.99730 * 204.80694 * 4 2 1 6 6 C 1.38237 * 119.99857 * 179.80693 * 5 4 2 7 7 C 1.38243 * 119.99823 * 0.40327 * 6 5 4 8 8 C 1.38234 * 119.99817 * 359.84874 * 7 6 5 9 9 C 1.38233 * 120.00253 * 359.96486 * 8 7 6 10 10 N 1.46497 * 109.47400 * 119.99940 * 2 1 3 11 11 C 1.46758 * 124.35156 * 241.52886 * 10 2 1 12 12 C 1.54479 * 105.47536 * 163.00293 * 11 10 2 13 13 H 1.09007 * 110.97201 * 267.26455 * 12 11 10 14 14 C 1.50697 * 110.97261 * 143.53327 * 12 11 10 15 15 O 1.21294 * 120.00027 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00262 * 180.02562 * 14 12 11 17 17 C 1.37099 * 120.00123 * 180.02562 * 16 14 12 18 18 H 1.07999 * 119.99807 * 222.63292 * 17 16 14 19 19 C 1.38952 * 119.99685 * 42.91214 * 17 16 14 20 20 N 1.31412 * 120.00413 * 18.76599 * 19 17 16 21 21 Si 1.86803 * 119.99416 * 198.76797 * 19 17 16 22 22 H 1.48497 * 109.47341 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47038 * 119.99994 * 21 19 17 24 24 H 1.48500 * 109.46950 * 239.99681 * 21 19 17 25 25 C 1.46505 * 119.99850 * 359.97438 * 16 14 12 26 26 C 1.53001 * 117.49780 * 187.03545 * 25 16 14 27 27 C 1.52995 * 117.49561 * 118.37482 * 25 16 14 28 28 C 1.54634 * 101.76235 * 25.41488 * 12 11 10 29 29 C 1.34421 * 124.34619 * 61.54870 * 10 2 1 30 30 O 1.21281 * 124.94098 * 0.38970 * 29 10 2 31 31 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46987 * 300.00074 * 1 2 3 33 33 H 1.09006 * 109.47237 * 59.99853 * 1 2 3 34 34 H 1.07997 * 119.99748 * 359.97438 * 5 4 2 35 35 H 1.07997 * 119.99956 * 180.22732 * 6 5 4 36 36 H 1.07996 * 119.99757 * 179.83147 * 7 6 5 37 37 H 1.08000 * 120.00019 * 179.97438 * 8 7 6 38 38 H 1.08005 * 119.99879 * 179.97438 * 9 8 7 39 39 H 1.09002 * 110.24709 * 44.00656 * 11 10 2 40 40 H 1.09001 * 110.32185 * 282.04104 * 11 10 2 41 41 H 0.96999 * 119.99729 * 184.83001 * 20 19 17 42 42 H 1.09000 * 115.55064 * 332.70492 * 25 16 14 43 43 H 1.08997 * 117.50046 * 359.97438 * 26 25 16 44 44 H 1.09002 * 117.49913 * 145.02424 * 26 25 16 45 45 H 1.09000 * 117.49832 * 214.97527 * 27 25 16 46 46 H 1.09002 * 117.50181 * 359.97438 * 27 25 16 47 47 H 1.09002 * 110.48495 * 93.88500 * 28 12 11 48 48 H 1.09009 * 110.48408 * 216.52340 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 3.2872 -1.2901 -1.2300 6 6 3.7464 -1.9452 -2.3574 7 6 2.9539 -2.0134 -3.4881 8 6 1.7011 -1.4292 -3.4902 9 6 1.2404 -0.7774 -2.3616 10 7 2.0184 -0.6906 1.1961 11 6 2.8390 -0.0623 2.2380 12 6 2.7396 -0.9994 3.4621 13 1 1.9313 -0.6908 4.1251 14 6 4.0498 -1.0580 4.2043 15 8 4.9994 -0.4144 3.8103 16 7 4.1665 -1.8255 5.3061 17 6 5.3583 -1.8784 5.9816 18 1 5.7333 -2.8250 6.3418 19 6 6.0808 -0.7133 6.2080 20 7 5.4870 0.4558 6.1199 21 14 7.8962 -0.8088 6.6375 22 1 8.3220 -2.2309 6.6744 23 1 8.6865 -0.0814 5.6120 24 1 8.1233 -0.1899 7.9682 25 6 3.0193 -2.6025 5.7824 26 6 3.1620 -3.3222 7.1250 27 6 3.1647 -4.1250 5.8216 28 6 2.4207 -2.3572 2.7944 29 6 1.7727 -1.9813 1.4801 30 8 1.1258 -2.7347 0.7839 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 3.9078 -1.2335 -0.3479 35 1 4.7254 -2.4013 -2.3558 36 1 3.3138 -2.5228 -4.3697 37 1 1.0822 -1.4820 -4.3737 38 1 0.2617 -0.3206 -2.3635 39 1 2.4452 0.9237 2.4850 40 1 3.8746 0.0177 1.9074 41 1 6.0053 1.2708 6.2086 42 1 2.0395 -2.1968 5.5304 43 1 4.1095 -3.2180 7.6537 44 1 2.2760 -3.3903 7.7561 45 1 2.2804 -4.7210 5.5960 46 1 4.1137 -4.5487 5.4927 47 1 3.3370 -2.9214 2.6205 48 1 1.7288 -2.9320 3.4102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299727266.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:11 Heat of formation + Delta-G solvation = 7.796815 kcal Electronic energy + Delta-G solvation = -30767.781959 eV Core-core repulsion = 26789.322142 eV Total energy + Delta-G solvation = -3978.459817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.71478 -39.14720 -38.36676 -36.42263 -35.76367 -34.43072 -32.82367 -31.31716 -30.90605 -30.21966 -28.84652 -27.27676 -25.40810 -24.17732 -22.54233 -22.33129 -21.75076 -21.33251 -21.06325 -19.15483 -18.74787 -17.32685 -17.03148 -16.26131 -16.15336 -15.66770 -15.09209 -14.86192 -14.76290 -14.52981 -14.14111 -13.97245 -13.88823 -13.65236 -13.64408 -13.39030 -12.92588 -12.65328 -12.56679 -12.47192 -12.10711 -11.94137 -11.85302 -11.77608 -11.32139 -11.11943 -10.97600 -10.94425 -10.87597 -10.86293 -10.76699 -10.57114 -10.19214 -10.04607 -9.79141 -9.53487 -8.87493 -8.80362 -8.72592 -8.46504 -8.10908 -7.14137 -6.16973 -3.95419 1.35349 1.44907 2.85939 3.11728 3.27320 3.36761 3.38020 3.84219 3.94496 4.19714 4.50585 4.64433 4.70229 4.74934 4.85621 4.95217 4.99105 5.10333 5.15198 5.17133 5.20979 5.32017 5.41581 5.44424 5.53692 5.58381 5.62221 5.71253 5.73786 5.79430 5.88772 5.92204 5.99139 5.99871 6.06047 6.13849 6.17897 6.20329 6.41151 6.41673 6.47763 6.53962 6.57246 6.69672 6.80493 6.89110 7.02699 7.34005 7.55708 8.17826 8.43750 8.96931 9.04324 9.56901 10.15967 10.89614 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.003286 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.731545 B = 8518.402534 C = 9207.000367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.195 3.805 3 H 0.100 0.900 4 C -0.086 4.086 5 C -0.100 4.100 6 C -0.119 4.119 7 C -0.124 4.124 8 C -0.123 4.123 9 C -0.111 4.111 10 N -0.616 5.616 11 C 0.119 3.881 12 C -0.114 4.114 13 H 0.097 0.903 14 C 0.492 3.508 15 O -0.528 6.528 16 N -0.421 5.421 17 C -0.345 4.345 18 H 0.079 0.921 19 C 0.074 3.926 20 N -0.829 5.829 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.286 1.286 25 C 0.073 3.927 26 C -0.176 4.176 27 C -0.205 4.205 28 C -0.139 4.139 29 C 0.522 3.478 30 O -0.532 6.532 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.264 0.736 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 -1.383 -11.314 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.092 3.908 3 H 0.118 0.882 4 C -0.087 4.087 5 C -0.118 4.118 6 C -0.137 4.137 7 C -0.142 4.142 8 C -0.141 4.141 9 C -0.129 4.129 10 N -0.350 5.350 11 C -0.004 4.004 12 C -0.136 4.136 13 H 0.115 0.885 14 C 0.279 3.721 15 O -0.406 6.406 16 N -0.141 5.141 17 C -0.472 4.472 18 H 0.097 0.903 19 C -0.137 4.137 20 N -0.463 5.463 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.212 1.212 25 C -0.033 4.033 26 C -0.213 4.213 27 C -0.244 4.244 28 C -0.179 4.179 29 C 0.310 3.690 30 O -0.408 6.408 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.124 0.876 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.159 -1.174 -11.853 15.025 hybrid contribution 0.837 0.069 0.418 0.938 sum -8.321 -1.105 -11.435 14.186 Atomic orbital electron populations 1.22236 0.94188 1.03817 1.02056 1.19699 0.94246 0.95360 0.81445 0.88244 1.20080 0.94556 0.99051 0.94976 1.21024 0.95492 0.97034 0.98242 1.21133 0.99890 0.99319 0.93342 1.21112 0.94819 1.00089 0.98199 1.21064 0.96217 0.98703 0.98140 1.21020 0.99321 0.99756 0.92799 1.48482 1.52760 1.11733 1.22046 1.22043 0.96427 0.96075 0.85835 1.22171 1.00141 0.94778 0.96534 0.88530 1.19216 0.87838 0.83785 0.81286 1.90537 1.39962 1.43504 1.66604 1.42710 1.08472 1.41217 1.21686 1.18932 0.97117 0.93455 1.37654 0.90286 1.25155 0.99204 0.94889 0.94450 1.69879 1.35692 0.97595 1.43135 0.86248 0.84564 0.78355 0.77506 1.19581 1.20637 1.21238 1.21737 0.91728 0.90019 0.99824 1.23104 1.03370 1.03981 0.90872 1.23328 1.02486 0.95631 1.02990 1.22336 1.02912 0.98131 0.94524 1.20937 0.79187 0.81481 0.87383 1.90674 1.40749 1.54329 1.55082 0.90767 0.91984 0.91338 0.86123 0.86212 0.86422 0.86316 0.85861 0.90458 0.89031 0.92586 0.87907 0.87486 0.89807 0.89697 0.88985 0.87620 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.37 37.16 0.31 -1.53 16 2 C 0.20 2.46 3.28 -69.08 -0.23 2.23 16 3 H 0.10 1.10 8.07 -51.93 -0.42 0.68 16 4 C -0.09 -1.16 4.76 -104.62 -0.50 -1.65 16 5 C -0.10 -1.44 8.90 -39.58 -0.35 -1.79 16 6 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 7 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 8 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 9 C -0.11 -1.32 9.13 -39.59 -0.36 -1.68 16 10 N -0.62 -8.98 2.02 -166.17 -0.34 -9.31 16 11 C 0.12 1.86 6.66 -3.13 -0.02 1.84 16 12 C -0.11 -1.95 2.56 -90.14 -0.23 -2.19 16 13 H 0.10 1.54 7.41 -51.92 -0.38 1.16 16 14 C 0.49 11.22 6.25 -10.99 -0.07 11.15 16 15 O -0.53 -14.11 13.15 5.55 0.07 -14.04 16 16 N -0.42 -9.69 2.85 -107.73 -0.31 -9.99 16 17 C -0.35 -8.88 7.86 -14.93 -0.12 -9.00 16 18 H 0.08 1.99 7.35 -52.49 -0.39 1.61 16 19 C 0.07 1.97 4.37 -17.47 -0.08 1.90 16 20 N -0.83 -23.29 11.65 55.50 0.65 -22.64 16 21 Si 0.91 21.07 29.60 -169.99 -5.03 16.04 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.07 1.34 4.94 -67.93 -0.34 1.01 16 26 C -0.18 -2.99 9.81 -26.69 -0.26 -3.25 16 27 C -0.21 -3.29 10.30 -26.69 -0.28 -3.57 16 28 C -0.14 -2.19 5.48 -26.74 -0.15 -2.34 16 29 C 0.52 8.55 6.98 -10.86 -0.08 8.48 16 30 O -0.53 -10.03 16.02 5.56 0.09 -9.94 16 31 H 0.07 1.00 6.90 -51.93 -0.36 0.64 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.60 6.57 -51.93 -0.34 0.26 16 34 H 0.12 1.85 7.56 -52.49 -0.40 1.45 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.12 1.21 6.05 -52.48 -0.32 0.89 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.63 6.96 -51.93 -0.36 1.26 16 41 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 42 H 0.10 1.68 6.40 -51.93 -0.33 1.34 16 43 H 0.11 2.04 6.80 -51.93 -0.35 1.69 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 47 H 0.11 1.79 7.89 -51.93 -0.41 1.38 16 48 H 0.10 1.46 7.48 -51.92 -0.39 1.07 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -32.18 385.05 -9.96 -42.14 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.97 Total: 7.89 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -3.93 Total: -5.94 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.00 Total: -41.94 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.16 Total: -23.98 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.18 -9.96 -42.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299727266.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.936 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds