Wall clock time and date at job start Wed Apr 1 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47187 * 2 1 4 4 C 1.50704 * 109.46910 * 240.00113 * 2 1 3 5 5 C 1.38237 * 119.99730 * 204.80694 * 4 2 1 6 6 C 1.38237 * 119.99857 * 179.80693 * 5 4 2 7 7 C 1.38243 * 119.99823 * 0.40327 * 6 5 4 8 8 C 1.38234 * 119.99817 * 359.84874 * 7 6 5 9 9 C 1.38233 * 120.00253 * 359.96486 * 8 7 6 10 10 N 1.46497 * 109.47400 * 119.99940 * 2 1 3 11 11 C 1.46758 * 124.35156 * 241.52886 * 10 2 1 12 12 C 1.54479 * 105.47536 * 163.00293 * 11 10 2 13 13 H 1.09007 * 110.97201 * 267.26455 * 12 11 10 14 14 C 1.50697 * 110.97261 * 143.53327 * 12 11 10 15 15 O 1.21294 * 120.00027 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00262 * 180.02562 * 14 12 11 17 17 C 1.37099 * 120.00123 * 180.02562 * 16 14 12 18 18 H 1.07999 * 119.99807 * 222.63292 * 17 16 14 19 19 C 1.38952 * 119.99685 * 42.91214 * 17 16 14 20 20 N 1.31412 * 120.00413 * 18.76599 * 19 17 16 21 21 Si 1.86803 * 119.99416 * 198.76797 * 19 17 16 22 22 H 1.48497 * 109.47341 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47038 * 119.99994 * 21 19 17 24 24 H 1.48500 * 109.46950 * 239.99681 * 21 19 17 25 25 C 1.46505 * 119.99850 * 359.97438 * 16 14 12 26 26 C 1.53001 * 117.49780 * 187.03545 * 25 16 14 27 27 C 1.52995 * 117.49561 * 118.37482 * 25 16 14 28 28 C 1.54634 * 101.76235 * 25.41488 * 12 11 10 29 29 C 1.34421 * 124.34619 * 61.54870 * 10 2 1 30 30 O 1.21281 * 124.94098 * 0.38970 * 29 10 2 31 31 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46987 * 300.00074 * 1 2 3 33 33 H 1.09006 * 109.47237 * 59.99853 * 1 2 3 34 34 H 1.07997 * 119.99748 * 359.97438 * 5 4 2 35 35 H 1.07997 * 119.99956 * 180.22732 * 6 5 4 36 36 H 1.07996 * 119.99757 * 179.83147 * 7 6 5 37 37 H 1.08000 * 120.00019 * 179.97438 * 8 7 6 38 38 H 1.08005 * 119.99879 * 179.97438 * 9 8 7 39 39 H 1.09002 * 110.24709 * 44.00656 * 11 10 2 40 40 H 1.09001 * 110.32185 * 282.04104 * 11 10 2 41 41 H 0.96999 * 119.99729 * 184.83001 * 20 19 17 42 42 H 1.09000 * 115.55064 * 332.70492 * 25 16 14 43 43 H 1.08997 * 117.50046 * 359.97438 * 26 25 16 44 44 H 1.09002 * 117.49913 * 145.02424 * 26 25 16 45 45 H 1.09000 * 117.49832 * 214.97527 * 27 25 16 46 46 H 1.09002 * 117.50181 * 359.97438 * 27 25 16 47 47 H 1.09002 * 110.48495 * 93.88500 * 28 12 11 48 48 H 1.09009 * 110.48408 * 216.52340 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 3.2872 -1.2901 -1.2300 6 6 3.7464 -1.9452 -2.3574 7 6 2.9539 -2.0134 -3.4881 8 6 1.7011 -1.4292 -3.4902 9 6 1.2404 -0.7774 -2.3616 10 7 2.0184 -0.6906 1.1961 11 6 2.8390 -0.0623 2.2380 12 6 2.7396 -0.9994 3.4621 13 1 1.9313 -0.6908 4.1251 14 6 4.0498 -1.0580 4.2043 15 8 4.9994 -0.4144 3.8103 16 7 4.1665 -1.8255 5.3061 17 6 5.3583 -1.8784 5.9816 18 1 5.7333 -2.8250 6.3418 19 6 6.0808 -0.7133 6.2080 20 7 5.4870 0.4558 6.1199 21 14 7.8962 -0.8088 6.6375 22 1 8.3220 -2.2309 6.6744 23 1 8.6865 -0.0814 5.6120 24 1 8.1233 -0.1899 7.9682 25 6 3.0193 -2.6025 5.7824 26 6 3.1620 -3.3222 7.1250 27 6 3.1647 -4.1250 5.8216 28 6 2.4207 -2.3572 2.7944 29 6 1.7727 -1.9813 1.4801 30 8 1.1258 -2.7347 0.7839 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 3.9078 -1.2335 -0.3479 35 1 4.7254 -2.4013 -2.3558 36 1 3.3138 -2.5228 -4.3697 37 1 1.0822 -1.4820 -4.3737 38 1 0.2617 -0.3206 -2.3635 39 1 2.4452 0.9237 2.4850 40 1 3.8746 0.0177 1.9074 41 1 6.0053 1.2708 6.2086 42 1 2.0395 -2.1968 5.5304 43 1 4.1095 -3.2180 7.6537 44 1 2.2760 -3.3903 7.7561 45 1 2.2804 -4.7210 5.5960 46 1 4.1137 -4.5487 5.4927 47 1 3.3370 -2.9214 2.6205 48 1 1.7288 -2.9320 3.4102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299727266.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:10 Heat of formation + Delta-G solvation = -8.894686 kcal Electronic energy + Delta-G solvation = -30768.505757 eV Core-core repulsion = 26789.322142 eV Total energy + Delta-G solvation = -3979.183615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.98070 -40.45073 -39.69522 -37.92122 -37.15810 -35.62404 -34.65086 -32.91633 -32.02790 -31.43564 -29.84190 -28.63074 -27.18359 -25.24793 -24.03473 -23.29360 -23.07580 -22.60007 -22.36914 -20.79127 -19.99387 -18.68207 -18.30395 -17.86167 -17.38558 -16.95566 -16.62045 -16.28096 -15.94637 -15.86649 -15.53120 -15.42783 -15.18048 -14.95865 -14.77227 -14.47265 -14.39813 -13.99714 -13.82768 -13.70169 -13.62573 -13.16631 -13.03268 -12.83985 -12.76236 -12.69239 -12.64165 -12.39751 -12.23588 -12.16231 -12.02635 -11.85967 -11.80631 -11.64389 -11.18013 -10.87256 -10.67823 -9.98532 -9.83380 -9.77762 -9.53752 -8.98728 -8.16376 -5.96712 0.40685 0.49309 1.38222 1.44633 1.51898 1.56076 1.94170 2.25615 2.38820 2.88748 2.98410 3.13957 3.31333 3.41473 3.56170 3.73892 3.90482 3.92637 4.01188 4.10060 4.15299 4.22031 4.22929 4.27142 4.30790 4.39031 4.50035 4.51609 4.59207 4.64664 4.67633 4.74292 4.87736 4.89336 4.94483 5.04036 5.08147 5.09193 5.13840 5.23225 5.32121 5.50593 5.51946 5.52999 5.55267 5.60413 5.72411 6.09926 6.11122 6.21741 7.05069 7.15878 7.19696 7.71571 8.34629 8.88363 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.003286 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.731545 B = 8518.402534 C = 9207.000367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.186 3.814 3 H 0.115 0.885 4 C -0.100 4.100 5 C -0.127 4.127 6 C -0.135 4.135 7 C -0.128 4.128 8 C -0.123 4.123 9 C -0.116 4.116 10 N -0.605 5.605 11 C 0.126 3.874 12 C -0.101 4.101 13 H 0.118 0.882 14 C 0.483 3.517 15 O -0.579 6.579 16 N -0.437 5.437 17 C -0.350 4.350 18 H 0.077 0.923 19 C 0.027 3.973 20 N -0.863 5.863 21 Si 0.958 3.042 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.277 1.277 25 C 0.049 3.951 26 C -0.174 4.174 27 C -0.182 4.182 28 C -0.129 4.129 29 C 0.523 3.477 30 O -0.556 6.556 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.258 0.742 42 H 0.130 0.870 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.792 -2.048 -12.298 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.085 3.915 3 H 0.133 0.867 4 C -0.101 4.101 5 C -0.146 4.146 6 C -0.153 4.153 7 C -0.146 4.146 8 C -0.141 4.141 9 C -0.134 4.134 10 N -0.338 5.338 11 C 0.004 3.996 12 C -0.123 4.123 13 H 0.136 0.864 14 C 0.271 3.729 15 O -0.460 6.460 16 N -0.156 5.156 17 C -0.478 4.478 18 H 0.094 0.906 19 C -0.180 4.180 20 N -0.498 5.498 21 Si 0.784 3.216 22 H -0.186 1.186 23 H -0.221 1.221 24 H -0.203 1.203 25 C -0.056 4.056 26 C -0.212 4.212 27 C -0.221 4.221 28 C -0.169 4.169 29 C 0.312 3.688 30 O -0.435 6.435 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.144 0.856 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.147 0.853 43 H 0.098 0.902 44 H 0.134 0.866 45 H 0.140 0.860 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.649 -1.863 -12.815 17.418 hybrid contribution 1.609 0.200 0.659 1.750 sum -10.040 -1.663 -12.157 15.854 Atomic orbital electron populations 1.22175 0.92525 1.02817 1.03853 1.20018 0.95467 0.95786 0.80252 0.86699 1.20240 0.94424 0.99431 0.95983 1.21008 0.96263 0.99069 0.98218 1.21341 1.00693 0.99569 0.93712 1.21455 0.94899 0.99835 0.98379 1.21497 0.96250 0.97417 0.98945 1.21350 1.00027 0.99630 0.92384 1.48465 1.51797 1.11258 1.22303 1.21872 0.95457 0.96762 0.85560 1.21994 0.97470 0.96179 0.96699 0.86417 1.20048 0.89197 0.82543 0.81119 1.90504 1.42195 1.45372 1.67901 1.42919 1.09215 1.41715 1.21776 1.19102 0.98730 0.93091 1.36871 0.90578 1.25855 1.02407 0.94864 0.94880 1.69960 1.36519 0.97843 1.45505 0.85445 0.80605 0.78522 0.77064 1.18558 1.22112 1.20276 1.22041 0.91097 0.91049 1.01416 1.23146 1.03458 1.03643 0.90962 1.23327 1.03176 0.94061 1.01486 1.22261 1.02653 0.97328 0.94644 1.20912 0.78888 0.81776 0.87265 1.90659 1.42073 1.54947 1.55820 0.92989 0.91192 0.88576 0.88460 0.85645 0.83896 0.83231 0.83507 0.88587 0.91649 0.93240 0.85278 0.90200 0.86590 0.85974 0.90805 0.89182 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.37 71.98 0.60 -2.50 16 2 C 0.19 4.47 3.28 44.25 0.15 4.61 16 3 H 0.12 2.37 8.07 -2.39 -0.02 2.35 16 4 C -0.10 -2.62 4.76 -19.86 -0.09 -2.71 16 5 C -0.13 -3.76 8.90 22.27 0.20 -3.56 16 6 C -0.14 -3.52 10.05 22.27 0.22 -3.29 16 7 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 8 C -0.12 -2.44 10.05 22.27 0.22 -2.22 16 9 C -0.12 -2.51 9.13 22.27 0.20 -2.31 16 10 N -0.61 -17.31 2.02 -798.22 -1.61 -18.92 16 11 C 0.13 3.98 6.66 86.83 0.58 4.56 16 12 C -0.10 -3.42 2.56 -10.48 -0.03 -3.45 16 13 H 0.12 3.51 7.41 -2.38 -0.02 3.49 16 14 C 0.48 22.42 6.25 87.66 0.55 22.97 16 15 O -0.58 -32.24 13.15 -3.07 -0.04 -32.28 16 16 N -0.44 -20.26 2.85 -613.13 -1.75 -22.01 16 17 C -0.35 -18.43 7.86 84.04 0.66 -17.77 16 18 H 0.08 3.93 7.35 -2.91 -0.02 3.91 16 19 C 0.03 1.46 4.37 84.93 0.37 1.83 16 20 N -0.86 -49.99 11.65 21.66 0.25 -49.73 16 21 Si 0.96 44.49 29.60 68.60 2.03 46.52 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 C 0.05 1.72 4.94 44.99 0.22 1.94 16 26 C -0.17 -5.62 9.81 30.62 0.30 -5.32 16 27 C -0.18 -5.41 10.30 30.62 0.32 -5.10 16 28 C -0.13 -3.95 5.48 30.59 0.17 -3.78 16 29 C 0.52 16.80 6.98 87.90 0.61 17.41 16 30 O -0.56 -20.58 16.02 -3.03 -0.05 -20.63 16 31 H 0.05 1.30 6.90 -2.39 -0.02 1.28 16 32 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.10 1.36 6.57 -2.38 -0.02 1.34 16 34 H 0.10 3.22 7.56 -2.91 -0.02 3.20 16 35 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.15 2.38 6.05 -2.91 -0.02 2.36 16 39 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.07 2.45 6.96 -2.39 -0.02 2.43 16 41 H 0.26 14.58 8.32 -92.71 -0.77 13.81 16 42 H 0.13 3.82 6.40 -2.39 -0.02 3.81 16 43 H 0.08 3.03 6.80 -2.39 -0.02 3.01 16 44 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 45 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.09 3.09 7.89 -2.39 -0.02 3.07 16 48 H 0.12 3.23 7.48 -2.38 -0.02 3.22 16 Total: -1.00 -73.06 385.05 5.27 -67.79 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.97 Total: 30.47 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.48 Total: -1.20 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -3.11 Total: -90.66 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.09 Total: -52.91 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -73.06 5.27 -67.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299727266.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.893 kcal (2) G-P(sol) polarization free energy of solvation -73.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds