Wall clock time and date at job start Wed Apr 1 2020 01:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47196 * 2 1 4 4 C 1.50697 * 109.47313 * 120.00489 * 2 1 3 5 5 C 1.38241 * 120.00099 * 63.72096 * 4 2 1 6 6 C 1.38230 * 120.00013 * 179.79208 * 5 4 2 7 7 C 1.38236 * 119.99853 * 0.46016 * 6 5 4 8 8 C 1.38238 * 120.00348 * 359.77057 * 7 6 5 9 9 C 1.38230 * 120.00057 * 243.99734 * 4 2 1 10 10 N 1.46500 * 109.47147 * 240.00470 * 2 1 3 11 11 C 1.46768 * 124.34969 * 299.02476 * 10 2 1 12 12 C 1.54476 * 105.47432 * 163.00726 * 11 10 2 13 13 H 1.08994 * 110.97134 * 143.57388 * 12 11 10 14 14 C 1.50711 * 110.96710 * 267.29588 * 12 11 10 15 15 O 1.21294 * 119.99882 * 359.97438 * 14 12 11 16 16 N 1.34772 * 120.00131 * 180.02562 * 14 12 11 17 17 C 1.37090 * 120.00037 * 180.02562 * 16 14 12 18 18 H 1.08002 * 120.00041 * 224.74079 * 17 16 14 19 19 C 1.38955 * 120.00368 * 44.73931 * 17 16 14 20 20 N 1.31410 * 120.00267 * 190.96190 * 19 17 16 21 21 Si 1.86799 * 119.99685 * 10.95733 * 19 17 16 22 22 H 1.48507 * 109.46989 * 264.19647 * 21 19 17 23 23 H 1.48501 * 109.47418 * 24.19496 * 21 19 17 24 24 H 1.48491 * 109.47278 * 144.19919 * 21 19 17 25 25 C 1.46501 * 119.99958 * 359.97438 * 16 14 12 26 26 C 1.52994 * 117.49946 * 183.53341 * 25 16 14 27 27 C 1.53000 * 60.00340 * 252.51064 * 26 25 16 28 28 C 1.54626 * 101.76951 * 25.41298 * 12 11 10 29 29 C 1.34420 * 124.35236 * 119.04651 * 10 2 1 30 30 O 1.21282 * 124.93938 * 0.38745 * 29 10 2 31 31 H 1.09000 * 109.47315 * 299.99796 * 1 2 3 32 32 H 1.09006 * 109.47248 * 59.99847 * 1 2 3 33 33 H 1.09003 * 109.47292 * 179.97438 * 1 2 3 34 34 H 1.07994 * 119.99839 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.00151 * 180.25383 * 6 5 4 36 36 H 1.08006 * 119.99918 * 179.79535 * 7 6 5 37 37 H 1.08002 * 120.00098 * 180.02562 * 8 7 6 38 38 H 1.07998 * 120.00449 * 359.97401 * 9 4 2 39 39 H 1.08998 * 110.24716 * 44.00144 * 11 10 2 40 40 H 1.09006 * 110.24774 * 282.00485 * 11 10 2 41 41 H 0.96994 * 120.00119 * 180.02562 * 20 19 17 42 42 H 1.09003 * 115.55008 * 329.24471 * 25 16 14 43 43 H 1.08997 * 117.50185 * 0.02562 * 26 25 16 44 44 H 1.09010 * 117.49745 * 145.02261 * 26 25 16 45 45 H 1.08995 * 117.49723 * 252.51297 * 27 26 25 46 46 H 1.08999 * 117.49391 * 107.48539 * 27 26 25 47 47 H 1.08995 * 110.48691 * 93.88084 * 28 12 11 48 48 H 1.08996 * 110.48870 * 216.53095 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7630 -2.0543 1.4109 6 6 2.2275 -2.7070 2.5374 7 6 2.9532 -2.0137 3.4880 8 6 3.2184 -0.6688 3.3098 9 6 2.7575 -0.0171 2.1812 10 7 2.0183 -0.6905 -1.1962 11 6 1.7400 -2.0964 -1.5124 12 6 2.0625 -2.2526 -3.0151 13 1 2.5062 -3.2269 -3.2197 14 6 0.8308 -2.0366 -3.8563 15 8 -0.2288 -1.7788 -3.3251 16 7 0.9064 -2.1309 -5.1986 17 6 -0.2139 -1.9340 -5.9637 18 1 -0.4372 -2.6077 -6.7777 19 6 -1.0622 -0.8675 -5.6921 20 7 -2.2379 -0.7980 -6.2750 21 14 -0.5314 0.4674 -4.4981 22 1 -1.0781 0.1712 -3.1494 23 1 0.9515 0.5117 -4.4322 24 1 -1.0456 1.7806 -4.9631 25 6 2.1860 -2.4429 -5.8400 26 6 2.2253 -2.4546 -7.3694 27 6 2.2940 -3.7708 -6.5923 28 6 3.0897 -1.1183 -3.2367 29 6 2.7791 -0.1180 -2.1450 30 8 3.1610 1.0330 -2.1283 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.1930 -2.5951 0.6700 35 1 2.0206 -3.7579 2.6765 36 1 3.3133 -2.5230 4.3698 37 1 3.7857 -0.1273 4.0524 38 1 2.9645 1.0337 2.0422 39 1 0.6906 -2.3244 -1.3262 40 1 2.3797 -2.7502 -0.9195 41 1 -2.8299 -0.0534 -6.0857 42 1 3.0735 -2.0876 -5.3162 43 1 1.2992 -2.2298 -7.8984 44 1 3.1387 -2.1069 -7.8521 45 1 3.2525 -4.2889 -6.5638 46 1 1.4129 -4.4122 -6.6100 47 1 4.1059 -1.4974 -3.1288 48 1 2.9526 -0.6659 -4.2188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299727267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:14 Heat of formation + Delta-G solvation = 9.585969 kcal Electronic energy + Delta-G solvation = -31455.117065 eV Core-core repulsion = 27476.734832 eV Total energy + Delta-G solvation = -3978.382233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.92667 -39.44655 -38.67104 -36.71057 -36.01934 -34.43822 -33.00188 -31.61485 -31.09262 -30.58141 -29.01993 -27.52730 -25.62307 -24.01966 -23.02009 -22.47949 -21.83105 -21.45847 -20.84360 -19.70653 -18.92783 -17.53982 -16.98475 -16.59673 -16.40056 -15.89982 -15.59744 -15.01618 -14.87528 -14.71678 -14.38514 -14.00086 -13.78276 -13.63071 -13.53529 -13.42312 -13.37357 -13.04246 -12.69630 -12.60009 -12.17285 -12.12786 -12.06922 -11.82101 -11.53006 -11.37624 -11.30912 -11.06103 -11.01274 -10.93545 -10.87273 -10.29897 -10.09789 -9.98597 -9.71706 -9.59224 -9.05621 -8.88968 -8.65996 -8.58813 -8.48626 -7.57019 -6.22189 -4.08401 1.16240 1.26106 2.78464 3.11917 3.16091 3.49368 3.63893 3.72125 3.75340 4.15152 4.39637 4.43933 4.55322 4.59138 4.68406 4.75090 4.84740 4.91747 4.97164 5.12636 5.18552 5.23277 5.29548 5.36425 5.37570 5.44795 5.51189 5.54398 5.55953 5.63928 5.73461 5.80393 5.82114 5.90600 5.96825 5.99835 6.04246 6.07625 6.23582 6.28460 6.35099 6.39253 6.46231 6.55459 6.71801 6.81192 6.84599 7.28789 7.77430 7.88000 8.36110 8.66452 8.78548 9.34307 9.67091 10.80911 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.004003 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.253998 B = 6992.860346 C = 7560.912259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.190 3.810 3 H 0.101 0.899 4 C -0.089 4.089 5 C -0.109 4.109 6 C -0.120 4.120 7 C -0.122 4.122 8 C -0.121 4.121 9 C -0.108 4.108 10 N -0.603 5.603 11 C 0.113 3.887 12 C -0.119 4.119 13 H 0.116 0.884 14 C 0.460 3.540 15 O -0.535 6.535 16 N -0.430 5.430 17 C -0.343 4.343 18 H 0.096 0.904 19 C 0.086 3.914 20 N -0.871 5.871 21 Si 0.932 3.068 22 H -0.258 1.258 23 H -0.284 1.284 24 H -0.318 1.318 25 C 0.054 3.946 26 C -0.170 4.170 27 C -0.197 4.197 28 C -0.153 4.153 29 C 0.524 3.476 30 O -0.538 6.538 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.273 0.727 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.110 0.890 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.373 -4.745 14.097 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.088 3.912 3 H 0.119 0.881 4 C -0.090 4.090 5 C -0.127 4.127 6 C -0.138 4.138 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.126 4.126 10 N -0.336 5.336 11 C -0.010 4.010 12 C -0.141 4.141 13 H 0.134 0.866 14 C 0.249 3.751 15 O -0.418 6.418 16 N -0.150 5.150 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.123 4.123 20 N -0.506 5.506 21 Si 0.766 3.234 22 H -0.184 1.184 23 H -0.210 1.210 24 H -0.249 1.249 25 C -0.051 4.051 26 C -0.208 4.208 27 C -0.236 4.236 28 C -0.193 4.193 29 C 0.313 3.687 30 O -0.415 6.415 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.128 0.872 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.805 -3.895 14.366 18.998 hybrid contribution 0.230 0.556 0.391 0.717 sum 12.036 -3.339 14.757 19.333 Atomic orbital electron populations 1.22159 0.93332 1.03479 1.02724 1.19820 0.94750 0.95910 0.80722 0.88128 1.20138 0.98299 0.94660 0.95918 1.21251 0.99490 0.94198 0.97760 1.21153 0.98430 0.99939 0.94303 1.21154 0.99089 0.94616 0.99190 1.21111 1.00276 0.94887 0.97676 1.21069 0.97446 1.00014 0.94077 1.48220 1.51454 1.12385 1.21582 1.22126 1.03333 0.81852 0.93687 1.22316 0.96173 1.00443 0.95204 0.86645 1.19870 0.89255 0.82914 0.83016 1.90460 1.30106 1.50189 1.71042 1.43068 1.06656 1.61791 1.03451 1.18725 0.99316 1.12909 1.15920 0.88641 1.25375 0.94270 0.97128 0.95493 1.69686 1.07369 1.31122 1.42406 0.85933 0.78425 0.77026 0.82009 1.18428 1.21021 1.24931 1.21989 0.89305 1.00350 0.93469 1.23159 1.03682 1.00129 0.93815 1.23289 1.02368 0.91643 1.06251 1.22538 1.00424 0.95983 1.00361 1.20809 0.77045 0.87765 0.83126 1.90675 1.55136 1.17596 1.78138 0.91509 0.91219 0.91492 0.85441 0.85991 0.86260 0.86134 0.86019 0.88250 0.90755 0.91757 0.86942 0.86889 0.89333 0.89363 0.88681 0.87235 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.08 37.15 0.34 -2.07 16 2 C 0.19 2.83 3.17 -69.09 -0.22 2.61 16 3 H 0.10 1.57 7.27 -51.93 -0.38 1.19 16 4 C -0.09 -1.12 4.96 -104.63 -0.52 -1.64 16 5 C -0.11 -1.24 7.86 -39.58 -0.31 -1.56 16 6 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 7 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 8 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 9 C -0.11 -1.22 9.67 -39.58 -0.38 -1.60 16 10 N -0.60 -9.90 2.75 -166.16 -0.46 -10.36 16 11 C 0.11 1.65 4.42 -3.12 -0.01 1.64 16 12 C -0.12 -1.89 2.66 -90.14 -0.24 -2.13 16 13 H 0.12 1.43 8.04 -51.93 -0.42 1.01 16 14 C 0.46 10.00 4.96 -10.98 -0.05 9.95 16 15 O -0.53 -13.57 10.69 5.55 0.06 -13.51 16 16 N -0.43 -9.67 2.51 -107.72 -0.27 -9.94 16 17 C -0.34 -9.25 8.43 -14.93 -0.13 -9.38 16 18 H 0.10 2.70 7.46 -52.49 -0.39 2.31 16 19 C 0.09 2.49 5.07 -17.47 -0.09 2.40 16 20 N -0.87 -26.34 13.96 55.50 0.77 -25.57 16 21 Si 0.93 25.35 24.33 -169.99 -4.14 21.21 16 22 H -0.26 -7.19 6.36 56.52 0.36 -6.83 16 23 H -0.28 -7.59 6.62 56.52 0.37 -7.22 16 24 H -0.32 -8.78 7.11 56.52 0.40 -8.38 16 25 C 0.05 0.95 5.38 -67.93 -0.37 0.58 16 26 C -0.17 -2.79 9.80 -26.73 -0.26 -3.06 16 27 C -0.20 -2.96 10.35 -26.73 -0.28 -3.23 16 28 C -0.15 -2.39 5.15 -26.74 -0.14 -2.53 16 29 C 0.52 9.74 8.02 -10.86 -0.09 9.66 16 30 O -0.54 -11.64 17.35 5.56 0.10 -11.54 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 33 H 0.07 1.00 6.71 -51.93 -0.35 0.65 16 34 H 0.13 1.42 5.39 -52.49 -0.28 1.14 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.26 7.95 -52.49 -0.42 0.84 16 39 H 0.10 1.59 5.63 -51.93 -0.29 1.30 16 40 H 0.07 0.85 6.93 -51.93 -0.36 0.49 16 41 H 0.27 7.85 8.31 -40.82 -0.34 7.51 16 42 H 0.11 1.66 5.16 -51.93 -0.27 1.39 16 43 H 0.11 2.17 6.74 -51.93 -0.35 1.82 16 44 H 0.09 1.20 8.14 -51.92 -0.42 0.77 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 47 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.11 1.94 6.03 -51.93 -0.31 1.62 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -35.08 375.43 -9.04 -44.12 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.83 Total: 4.97 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -3.94 Total: -5.04 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.05 Total: -45.87 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: 0.16 Total: -25.05 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.14 Total: 21.21 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.08 -9.04 -44.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299727267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.706 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds