Wall clock time and date at job start Wed Apr 1 2020 01:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47196 * 2 1 4 4 C 1.50697 * 109.47313 * 120.00489 * 2 1 3 5 5 C 1.38241 * 120.00099 * 63.72096 * 4 2 1 6 6 C 1.38230 * 120.00013 * 179.79208 * 5 4 2 7 7 C 1.38236 * 119.99853 * 0.46016 * 6 5 4 8 8 C 1.38238 * 120.00348 * 359.77057 * 7 6 5 9 9 C 1.38230 * 120.00057 * 243.99734 * 4 2 1 10 10 N 1.46500 * 109.47147 * 240.00470 * 2 1 3 11 11 C 1.46768 * 124.34969 * 299.02476 * 10 2 1 12 12 C 1.54476 * 105.47432 * 163.00726 * 11 10 2 13 13 H 1.08994 * 110.97134 * 143.57388 * 12 11 10 14 14 C 1.50711 * 110.96710 * 267.29588 * 12 11 10 15 15 O 1.21294 * 119.99882 * 359.97438 * 14 12 11 16 16 N 1.34772 * 120.00131 * 180.02562 * 14 12 11 17 17 C 1.37090 * 120.00037 * 180.02562 * 16 14 12 18 18 H 1.08002 * 120.00041 * 224.74079 * 17 16 14 19 19 C 1.38955 * 120.00368 * 44.73931 * 17 16 14 20 20 N 1.31410 * 120.00267 * 190.96190 * 19 17 16 21 21 Si 1.86799 * 119.99685 * 10.95733 * 19 17 16 22 22 H 1.48507 * 109.46989 * 264.19647 * 21 19 17 23 23 H 1.48501 * 109.47418 * 24.19496 * 21 19 17 24 24 H 1.48491 * 109.47278 * 144.19919 * 21 19 17 25 25 C 1.46501 * 119.99958 * 359.97438 * 16 14 12 26 26 C 1.52994 * 117.49946 * 183.53341 * 25 16 14 27 27 C 1.53000 * 60.00340 * 252.51064 * 26 25 16 28 28 C 1.54626 * 101.76951 * 25.41298 * 12 11 10 29 29 C 1.34420 * 124.35236 * 119.04651 * 10 2 1 30 30 O 1.21282 * 124.93938 * 0.38745 * 29 10 2 31 31 H 1.09000 * 109.47315 * 299.99796 * 1 2 3 32 32 H 1.09006 * 109.47248 * 59.99847 * 1 2 3 33 33 H 1.09003 * 109.47292 * 179.97438 * 1 2 3 34 34 H 1.07994 * 119.99839 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.00151 * 180.25383 * 6 5 4 36 36 H 1.08006 * 119.99918 * 179.79535 * 7 6 5 37 37 H 1.08002 * 120.00098 * 180.02562 * 8 7 6 38 38 H 1.07998 * 120.00449 * 359.97401 * 9 4 2 39 39 H 1.08998 * 110.24716 * 44.00144 * 11 10 2 40 40 H 1.09006 * 110.24774 * 282.00485 * 11 10 2 41 41 H 0.96994 * 120.00119 * 180.02562 * 20 19 17 42 42 H 1.09003 * 115.55008 * 329.24471 * 25 16 14 43 43 H 1.08997 * 117.50185 * 0.02562 * 26 25 16 44 44 H 1.09010 * 117.49745 * 145.02261 * 26 25 16 45 45 H 1.08995 * 117.49723 * 252.51297 * 27 26 25 46 46 H 1.08999 * 117.49391 * 107.48539 * 27 26 25 47 47 H 1.08995 * 110.48691 * 93.88084 * 28 12 11 48 48 H 1.08996 * 110.48870 * 216.53095 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7630 -2.0543 1.4109 6 6 2.2275 -2.7070 2.5374 7 6 2.9532 -2.0137 3.4880 8 6 3.2184 -0.6688 3.3098 9 6 2.7575 -0.0171 2.1812 10 7 2.0183 -0.6905 -1.1962 11 6 1.7400 -2.0964 -1.5124 12 6 2.0625 -2.2526 -3.0151 13 1 2.5062 -3.2269 -3.2197 14 6 0.8308 -2.0366 -3.8563 15 8 -0.2288 -1.7788 -3.3251 16 7 0.9064 -2.1309 -5.1986 17 6 -0.2139 -1.9340 -5.9637 18 1 -0.4372 -2.6077 -6.7777 19 6 -1.0622 -0.8675 -5.6921 20 7 -2.2379 -0.7980 -6.2750 21 14 -0.5314 0.4674 -4.4981 22 1 -1.0781 0.1712 -3.1494 23 1 0.9515 0.5117 -4.4322 24 1 -1.0456 1.7806 -4.9631 25 6 2.1860 -2.4429 -5.8400 26 6 2.2253 -2.4546 -7.3694 27 6 2.2940 -3.7708 -6.5923 28 6 3.0897 -1.1183 -3.2367 29 6 2.7791 -0.1180 -2.1450 30 8 3.1610 1.0330 -2.1283 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.1930 -2.5951 0.6700 35 1 2.0206 -3.7579 2.6765 36 1 3.3133 -2.5230 4.3698 37 1 3.7857 -0.1273 4.0524 38 1 2.9645 1.0337 2.0422 39 1 0.6906 -2.3244 -1.3262 40 1 2.3797 -2.7502 -0.9195 41 1 -2.8299 -0.0534 -6.0857 42 1 3.0735 -2.0876 -5.3162 43 1 1.2992 -2.2298 -7.8984 44 1 3.1387 -2.1069 -7.8521 45 1 3.2525 -4.2889 -6.5638 46 1 1.4129 -4.4122 -6.6100 47 1 4.1059 -1.4974 -3.1288 48 1 2.9526 -0.6659 -4.2188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299727267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:13 Heat of formation + Delta-G solvation = -12.765990 kcal Electronic energy + Delta-G solvation = -31456.086319 eV Core-core repulsion = 27476.734832 eV Total energy + Delta-G solvation = -3979.351487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.26871 -40.71745 -39.90666 -38.20010 -37.42174 -35.66338 -34.91190 -33.43949 -31.90809 -31.74146 -30.12446 -28.78756 -27.44368 -25.28370 -24.25931 -23.44536 -23.05003 -22.71798 -22.05872 -21.34314 -20.27738 -19.17024 -18.08388 -18.03370 -17.74236 -17.35835 -16.85638 -16.68204 -16.10801 -15.76980 -15.60890 -15.47494 -15.40848 -15.01472 -14.88885 -14.62571 -14.60378 -14.47060 -14.20074 -13.75337 -13.49268 -13.44253 -13.28500 -13.21239 -13.12176 -12.70045 -12.56053 -12.53250 -12.35658 -12.16011 -12.07995 -11.92176 -11.81764 -11.61069 -11.25905 -10.96784 -10.83385 -10.34086 -9.86601 -9.78813 -9.70925 -9.37886 -8.45553 -6.26291 0.34808 0.49125 1.12970 1.23706 1.40928 1.42191 1.85868 1.97310 2.32871 2.56164 2.90061 2.93921 3.16522 3.23882 3.34459 3.58991 3.66007 3.82242 3.87549 4.05055 4.10297 4.16737 4.17753 4.19897 4.29654 4.33052 4.40938 4.46185 4.52353 4.57451 4.61141 4.67912 4.72833 4.81078 4.85016 4.93889 5.00135 5.02352 5.10709 5.15171 5.27787 5.42250 5.49792 5.55932 5.61633 5.64858 5.66457 5.82015 6.01998 6.09494 6.70361 6.85349 7.00394 7.29634 7.80512 8.61206 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.004003 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.253998 B = 6992.860346 C = 7560.912259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.189 3.811 3 H 0.084 0.916 4 C -0.102 4.102 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.122 4.122 9 C -0.121 4.121 10 N -0.604 5.604 11 C 0.113 3.887 12 C -0.108 4.108 13 H 0.168 0.832 14 C 0.454 3.546 15 O -0.578 6.578 16 N -0.450 5.450 17 C -0.321 4.321 18 H 0.073 0.927 19 C 0.042 3.958 20 N -0.916 5.916 21 Si 0.979 3.021 22 H -0.279 1.279 23 H -0.278 1.278 24 H -0.332 1.332 25 C 0.034 3.966 26 C -0.180 4.180 27 C -0.167 4.167 28 C -0.146 4.146 29 C 0.505 3.495 30 O -0.583 6.583 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.270 0.730 42 H 0.152 0.848 43 H 0.072 0.928 44 H 0.124 0.876 45 H 0.137 0.863 46 H 0.072 0.928 47 H 0.165 0.835 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.493 -7.492 16.348 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.087 3.913 3 H 0.102 0.898 4 C -0.103 4.103 5 C -0.136 4.136 6 C -0.137 4.137 7 C -0.137 4.137 8 C -0.140 4.140 9 C -0.140 4.140 10 N -0.335 5.335 11 C -0.009 4.009 12 C -0.130 4.130 13 H 0.185 0.815 14 C 0.246 3.754 15 O -0.464 6.464 16 N -0.169 5.169 17 C -0.449 4.449 18 H 0.091 0.909 19 C -0.161 4.161 20 N -0.555 5.555 21 Si 0.815 3.185 22 H -0.207 1.207 23 H -0.204 1.204 24 H -0.265 1.265 25 C -0.069 4.069 26 C -0.218 4.218 27 C -0.206 4.206 28 C -0.185 4.185 29 C 0.294 3.706 30 O -0.464 6.464 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.145 0.855 35 H 0.164 0.836 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.138 0.862 41 H 0.079 0.921 42 H 0.169 0.831 43 H 0.091 0.909 44 H 0.143 0.857 45 H 0.155 0.845 46 H 0.090 0.910 47 H 0.183 0.817 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.951 -6.682 16.618 23.984 hybrid contribution -1.027 1.296 -0.231 1.670 sum 14.924 -5.386 16.387 22.809 Atomic orbital electron populations 1.22082 0.94151 1.03069 1.01624 1.19806 0.94032 0.95635 0.81851 0.89833 1.19883 0.99926 0.95273 0.95169 1.21301 0.99927 0.93673 0.98728 1.21450 0.97679 1.01109 0.93502 1.21540 0.97963 0.94391 0.99772 1.21405 0.99847 0.95443 0.97309 1.21195 0.97825 1.00270 0.94691 1.48430 1.50392 1.13174 1.21553 1.22316 1.03446 0.81496 0.93613 1.22386 0.93186 1.03078 0.94312 0.81452 1.21007 0.90844 0.80423 0.83141 1.90428 1.32597 1.51422 1.71917 1.43273 1.07442 1.62336 1.03895 1.18599 1.00609 1.10931 1.14722 0.90930 1.25845 0.94725 0.98813 0.96705 1.69756 1.08639 1.32171 1.44926 0.85190 0.78077 0.75335 0.79895 1.20652 1.20395 1.26470 1.22388 0.87703 1.02807 0.94048 1.23194 1.03507 1.01921 0.93139 1.23335 1.03802 0.90329 1.03100 1.22623 1.03089 0.94690 0.98139 1.21467 0.77116 0.87819 0.84167 1.90643 1.57084 1.19443 1.79192 0.89376 0.95421 0.91485 0.85515 0.83633 0.83446 0.83925 0.86116 0.89971 0.86202 0.92067 0.83126 0.90910 0.85743 0.84459 0.90979 0.81743 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 9.08 71.98 0.65 -4.13 16 2 C 0.19 5.68 3.17 44.24 0.14 5.82 16 3 H 0.08 2.74 7.27 -2.39 -0.02 2.73 16 4 C -0.10 -2.41 4.96 -19.87 -0.10 -2.51 16 5 C -0.12 -2.40 7.86 22.27 0.17 -2.22 16 6 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 7 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 8 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 9 C -0.12 -2.56 9.67 22.27 0.22 -2.35 16 10 N -0.60 -19.22 2.75 -798.20 -2.20 -21.41 16 11 C 0.11 3.01 4.42 86.83 0.38 3.39 16 12 C -0.11 -3.02 2.66 -10.48 -0.03 -3.04 16 13 H 0.17 3.01 8.04 -2.39 -0.02 2.99 16 14 C 0.45 19.27 4.96 87.66 0.43 19.70 16 15 O -0.58 -29.85 10.69 -3.07 -0.03 -29.89 16 16 N -0.45 -19.84 2.51 -613.12 -1.54 -21.37 16 17 C -0.32 -17.81 8.43 84.04 0.71 -17.10 16 18 H 0.07 4.30 7.46 -2.91 -0.02 4.28 16 19 C 0.04 2.55 5.07 84.93 0.43 2.98 16 20 N -0.92 -58.41 13.96 21.66 0.30 -58.10 16 21 Si 0.98 55.33 24.33 68.60 1.67 57.00 16 22 H -0.28 -16.47 6.36 99.48 0.63 -15.84 16 23 H -0.28 -15.11 6.62 99.48 0.66 -14.45 16 24 H -0.33 -19.13 7.11 99.48 0.71 -18.43 16 25 C 0.03 1.08 5.38 44.99 0.24 1.33 16 26 C -0.18 -5.50 9.80 30.59 0.30 -5.20 16 27 C -0.17 -4.37 10.35 30.60 0.32 -4.06 16 28 C -0.15 -4.01 5.15 30.59 0.16 -3.85 16 29 C 0.50 18.17 8.02 87.90 0.71 18.87 16 30 O -0.58 -25.37 17.35 -3.04 -0.05 -25.42 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.03 1.07 8.12 -2.38 -0.02 1.05 16 33 H 0.07 2.07 6.71 -2.39 -0.02 2.05 16 34 H 0.13 2.52 5.39 -2.91 -0.02 2.51 16 35 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.12 2.46 7.95 -2.91 -0.02 2.44 16 39 H 0.08 2.54 5.63 -2.39 -0.01 2.52 16 40 H 0.12 2.16 6.93 -2.38 -0.02 2.15 16 41 H 0.27 16.52 8.31 -92.71 -0.77 15.75 16 42 H 0.15 3.62 5.16 -2.39 -0.01 3.61 16 43 H 0.07 2.84 6.74 -2.39 -0.02 2.82 16 44 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 45 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.17 2.74 8.14 -2.39 -0.02 2.72 16 48 H 0.09 2.99 6.03 -2.39 -0.01 2.97 16 Total: -1.00 -84.88 375.43 4.41 -80.47 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.85 Total: 16.03 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 5.41 Total: 2.70 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -3.43 Total: -100.89 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -0.09 Total: -55.30 kcal Atomic # 14 Polarization: 55.33 SS G_CDS: 1.67 Total: 57.00 kcal Total: -84.88 4.41 -80.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299727267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.701 kcal (2) G-P(sol) polarization free energy of solvation -84.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds