Wall clock time and date at job start Wed Apr 1 2020 00:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.05312 * 2 1 4 4 C 1.54268 * 110.03260 * 238.58589 * 2 1 3 5 5 C 1.54891 * 104.19074 * 264.32564 * 4 2 1 6 6 C 1.54885 * 102.75128 * 322.05374 * 5 4 2 7 7 C 1.53875 * 110.03059 * 121.41518 * 2 1 3 8 8 O 1.42901 * 110.07323 * 359.97438 * 7 2 1 9 9 C 1.52993 * 110.03237 * 238.57057 * 7 2 1 10 10 N 1.46495 * 109.47154 * 182.43782 * 9 7 2 11 11 C 1.34781 * 120.00199 * 175.01965 * 10 9 7 12 12 O 1.21662 * 119.99919 * 4.46418 * 11 10 9 13 13 C 1.46891 * 119.99981 * 184.47250 * 11 10 9 14 14 C 1.36126 * 125.43471 * 173.57075 * 13 11 10 15 15 C 1.41704 * 107.74717 * 179.97438 * 14 13 11 16 16 C 1.40017 * 133.35204 * 179.97438 * 15 14 13 17 17 C 1.36579 * 119.83400 * 179.97438 * 16 15 14 18 18 C 1.38853 * 120.59837 * 0.02562 * 17 16 15 19 19 C 1.37847 * 120.63336 * 359.97438 * 18 17 16 20 20 C 1.39092 * 119.81494 * 0.02562 * 19 18 17 21 21 N 1.37832 * 133.16443 * 180.34068 * 20 19 18 22 22 C 1.36899 * 125.62053 * 359.94034 * 21 20 19 23 23 H 1.07993 * 119.99948 * 134.28875 * 22 21 20 24 24 C 1.39008 * 119.99904 * 314.29080 * 22 21 20 25 25 N 1.31351 * 120.00055 * 2.00297 * 24 22 21 26 26 Si 1.86800 * 120.00186 * 182.00700 * 24 22 21 27 27 H 1.48500 * 109.46745 * 4.95608 * 26 24 22 28 28 H 1.48500 * 109.47048 * 124.95379 * 26 24 22 29 29 H 1.48495 * 109.46962 * 244.96046 * 26 24 22 30 30 H 1.08997 * 109.47225 * 298.57642 * 1 2 3 31 31 H 1.09002 * 109.47159 * 58.58768 * 1 2 3 32 32 H 1.09003 * 109.46727 * 178.58000 * 1 2 3 33 33 H 1.08995 * 110.48459 * 145.64782 * 4 2 1 34 34 H 1.09001 * 110.59689 * 23.05594 * 4 2 1 35 35 H 1.09006 * 110.74787 * 203.74553 * 5 4 2 36 36 H 1.08994 * 110.91749 * 80.45345 * 5 4 2 37 37 H 1.08997 * 110.49025 * 279.26985 * 6 5 4 38 38 H 1.08998 * 110.48575 * 156.62404 * 6 5 4 39 39 H 0.96708 * 113.99743 * 183.82403 * 8 7 2 40 40 H 1.09004 * 109.47310 * 62.43400 * 9 7 2 41 41 H 1.09002 * 109.47356 * 302.43178 * 9 7 2 42 42 H 0.97001 * 120.00419 * 355.00984 * 10 9 7 43 43 H 1.07997 * 126.12617 * 359.96138 * 14 13 11 44 44 H 1.08007 * 120.08098 * 359.97438 * 16 15 14 45 45 H 1.07998 * 119.69634 * 179.97438 * 17 16 15 46 46 H 1.08001 * 119.68292 * 179.97438 * 18 17 16 47 47 H 1.07997 * 120.09557 * 179.97438 * 19 18 17 48 48 H 0.96999 * 120.00496 * 185.00410 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 2.3281 -2.1901 -0.7191 6 6 2.8875 -1.9406 0.7035 7 6 2.0571 -0.7535 1.2338 8 8 0.9641 -1.2328 2.0197 9 6 2.9408 0.1703 2.0741 10 7 3.4824 -0.5751 3.2130 11 6 4.3725 0.0095 4.0393 12 8 4.6648 1.1808 3.8880 13 6 4.9897 -0.7675 5.1223 14 6 5.9868 -0.3293 5.9389 15 6 6.2954 -1.3755 6.8435 16 6 7.2170 -1.5005 7.8901 17 6 7.2825 -2.6640 8.6025 18 6 6.4427 -3.7271 8.2983 19 6 5.5272 -3.6279 7.2725 20 6 5.4420 -2.4530 6.5329 21 7 4.6459 -2.0576 5.4795 22 6 3.6769 -2.8187 4.8829 23 1 2.7090 -2.3901 4.6691 24 6 3.9389 -4.1433 4.5523 25 7 5.1024 -4.6762 4.8479 26 14 2.6361 -5.1654 3.6876 27 1 1.4692 -4.3067 3.3616 28 1 3.2005 -5.7300 2.4355 29 1 2.2030 -6.2716 4.5785 30 1 -0.3633 0.4915 0.9024 31 1 -0.3633 0.5356 -0.8771 32 1 -0.3633 -1.0274 -0.0255 33 1 2.9811 -0.3000 -1.5966 34 1 1.3078 -0.7698 -2.0271 35 1 3.0677 -2.6930 -1.3423 36 1 1.4049 -2.7679 -0.6754 37 1 3.9440 -1.6766 0.6571 38 1 2.7402 -2.8197 1.3309 39 1 1.2311 -1.6660 2.8420 40 1 2.3471 1.0090 2.4380 41 1 3.7612 0.5445 1.4617 42 1 3.2004 -1.4894 3.3727 43 1 6.4583 0.6417 5.9035 44 1 7.8745 -0.6789 8.1336 45 1 7.9945 -2.7582 9.4090 46 1 6.5073 -4.6406 8.8710 47 1 4.8785 -4.4603 7.0432 48 1 5.3125 -5.5763 4.5536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590524607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:29 Heat of formation + Delta-G solvation = -40.625698 kcal Electronic energy + Delta-G solvation = -31086.604218 eV Core-core repulsion = 27106.044644 eV Total energy + Delta-G solvation = -3980.559574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.59245 -39.82553 -38.23461 -35.94287 -35.16264 -34.03507 -33.49977 -31.09033 -30.75406 -29.59202 -28.77864 -27.80699 -26.04338 -25.11992 -24.08619 -22.34481 -21.07779 -20.83798 -20.02090 -19.64953 -19.18951 -18.30791 -16.75928 -16.19053 -15.96602 -15.77467 -15.34412 -14.95080 -14.91803 -14.71992 -14.51010 -13.82920 -13.66969 -13.36994 -13.08270 -13.06079 -12.91679 -12.82670 -12.57830 -12.53479 -12.41261 -11.96318 -11.81247 -11.69649 -11.63137 -11.27819 -11.24490 -10.98247 -10.79257 -10.67731 -10.66088 -10.62375 -10.47338 -10.25184 -9.80539 -9.78272 -9.45095 -9.35590 -8.68178 -8.58367 -7.25752 -6.90420 -6.62569 -4.81520 1.81984 2.71290 2.83361 2.87631 2.89734 3.11533 3.57981 3.68337 4.12933 4.20752 4.45633 4.48966 4.52386 4.64691 4.73542 5.05975 5.11230 5.27081 5.32909 5.41073 5.52562 5.56297 5.60713 5.74337 5.82287 5.86422 5.90560 5.93517 5.96690 5.98168 6.03247 6.14023 6.16284 6.24269 6.30144 6.40875 6.44860 6.57891 6.67399 6.71631 6.88042 6.92553 7.08601 7.12760 7.40533 7.55999 7.63894 7.69929 7.88100 7.91418 8.11283 8.25082 8.59299 8.88895 9.19668 10.02814 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.004121 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.922401 B = 6793.073748 C = 8221.143413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 H 0.080 0.920 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.152 4.152 7 C 0.124 3.876 8 O -0.550 6.550 9 C 0.095 3.905 10 N -0.731 5.731 11 C 0.597 3.403 12 O -0.556 6.556 13 C -0.020 4.020 14 C -0.162 4.162 15 C -0.136 4.136 16 C -0.089 4.089 17 C -0.159 4.159 18 C -0.151 4.151 19 C -0.047 4.047 20 C 0.110 3.890 21 N -0.265 5.265 22 C -0.374 4.374 23 H 0.104 0.896 24 C 0.060 3.940 25 N -0.816 5.816 26 Si 0.917 3.083 27 H -0.256 1.256 28 H -0.270 1.270 29 H -0.269 1.269 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.375 0.625 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.412 0.588 43 H 0.132 0.868 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.121 0.879 48 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.233 1.104 -7.160 8.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.099 4.099 3 H 0.098 0.902 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.190 4.190 7 C 0.083 3.917 8 O -0.357 6.357 9 C -0.029 4.029 10 N -0.392 5.392 11 C 0.387 3.613 12 O -0.435 6.435 13 C -0.134 4.134 14 C -0.190 4.190 15 C -0.140 4.140 16 C -0.108 4.108 17 C -0.178 4.178 18 C -0.171 4.171 19 C -0.066 4.066 20 C -0.004 4.004 21 N 0.070 4.930 22 C -0.501 4.501 23 H 0.121 0.879 24 C -0.154 4.154 25 N -0.444 5.444 26 Si 0.741 3.259 27 H -0.180 1.180 28 H -0.195 1.195 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.223 0.777 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.258 0.742 43 H 0.150 0.850 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.139 0.861 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.589 1.755 -7.976 9.896 hybrid contribution -0.071 -1.384 0.110 1.390 sum -5.660 0.372 -7.866 9.698 Atomic orbital electron populations 1.21509 0.93758 1.02253 1.00937 1.21712 0.97286 0.98790 0.92128 0.90157 1.22451 1.00871 0.95617 0.96810 1.22429 1.00891 0.96673 0.95773 1.23088 1.00190 0.98428 0.97279 1.22076 0.85934 0.92780 0.90891 1.86542 1.33212 1.78853 1.37056 1.22049 0.97355 0.95096 0.88407 1.46631 1.45422 1.18949 1.28156 1.17260 0.77888 0.85632 0.80519 1.90719 1.63609 1.15805 1.73412 1.20080 1.02889 0.88855 1.01605 1.20406 1.00658 0.99145 0.98818 1.18052 1.01169 0.94795 1.00012 1.20044 0.98098 0.97227 0.95428 1.20280 1.01554 0.94489 1.01474 1.20601 0.98599 0.98322 0.99617 1.20198 0.98524 0.95161 0.92761 1.18279 0.96356 0.95196 0.90615 1.39903 1.24597 1.08520 1.19978 1.19485 0.94035 0.93885 1.42707 0.87909 1.25707 0.97301 0.97206 0.95225 1.69948 1.20665 1.16434 1.37390 0.86008 0.80130 0.80372 0.79428 1.17995 1.19490 1.19404 0.92203 0.93479 0.92169 0.91430 0.91264 0.91577 0.91301 0.90318 0.90789 0.77661 0.91262 0.90863 0.74190 0.85018 0.87809 0.87976 0.87742 0.86111 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.09 37.16 0.30 -1.11 16 2 C -0.08 -0.92 3.16 -89.50 -0.28 -1.20 16 3 H 0.08 0.87 7.67 -51.93 -0.40 0.47 16 4 C -0.12 -1.22 6.37 -25.07 -0.16 -1.38 16 5 C -0.12 -1.37 6.91 -24.74 -0.17 -1.54 16 6 C -0.15 -2.07 5.51 -25.07 -0.14 -2.21 16 7 C 0.12 1.68 1.02 -89.50 -0.09 1.59 16 8 O -0.55 -7.86 11.14 -35.23 -0.39 -8.25 16 9 C 0.10 1.49 4.45 -4.05 -0.02 1.47 16 10 N -0.73 -13.54 5.01 -61.56 -0.31 -13.85 16 11 C 0.60 13.20 7.76 -12.76 -0.10 13.10 16 12 O -0.56 -13.15 16.85 5.22 0.09 -13.06 16 13 C -0.02 -0.47 6.77 -82.25 -0.56 -1.03 16 14 C -0.16 -3.77 10.55 -39.02 -0.41 -4.18 16 15 C -0.14 -3.16 6.16 -106.89 -0.66 -3.82 16 16 C -0.09 -1.82 10.06 -39.51 -0.40 -2.21 16 17 C -0.16 -3.04 9.97 -39.95 -0.40 -3.44 16 18 C -0.15 -3.03 10.02 -39.50 -0.40 -3.43 16 19 C -0.05 -1.07 8.46 -39.41 -0.33 -1.40 16 20 C 0.11 2.70 6.04 -83.83 -0.51 2.19 16 21 N -0.27 -6.41 2.83 -56.08 -0.16 -6.57 16 22 C -0.37 -8.42 7.66 -15.00 -0.11 -8.53 16 23 H 0.10 2.12 6.46 -52.49 -0.34 1.79 16 24 C 0.06 1.31 5.09 -17.47 -0.09 1.22 16 25 N -0.82 -19.26 10.06 55.50 0.56 -18.70 16 26 Si 0.92 16.50 29.56 -169.99 -5.02 11.48 16 27 H -0.26 -4.28 7.11 56.52 0.40 -3.88 16 28 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 29 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 30 H 0.06 0.71 7.87 -51.93 -0.41 0.30 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.71 7.87 -51.93 -0.41 0.30 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.12 7.85 -51.93 -0.41 0.72 16 38 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 39 H 0.37 5.24 7.80 45.56 0.36 5.59 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.41 7.57 3.07 -40.82 -0.13 7.45 16 43 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 44 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 45 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 46 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 47 H 0.12 2.83 6.48 -52.49 -0.34 2.49 16 48 H 0.28 6.26 8.31 -40.82 -0.34 5.92 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -27.20 381.21 -10.28 -37.47 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -6.26 Total: 21.66 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -4.52 Total: -15.92 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.09 Total: -39.13 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.30 Total: -21.31 kcal Atomic # 14 Polarization: 16.50 SS G_CDS: -5.02 Total: 11.48 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.20 -10.28 -37.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590524607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.151 kcal (2) G-P(sol) polarization free energy of solvation -27.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds