Wall clock time and date at job start Wed Apr 1 2020 00:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.05312 * 2 1 4 4 C 1.54268 * 110.03260 * 238.58589 * 2 1 3 5 5 C 1.54891 * 104.19074 * 264.32564 * 4 2 1 6 6 C 1.54885 * 102.75128 * 322.05374 * 5 4 2 7 7 C 1.53875 * 110.03059 * 121.41518 * 2 1 3 8 8 O 1.42901 * 110.07323 * 359.97438 * 7 2 1 9 9 C 1.52993 * 110.03237 * 238.57057 * 7 2 1 10 10 N 1.46495 * 109.47154 * 182.43782 * 9 7 2 11 11 C 1.34781 * 120.00199 * 175.01965 * 10 9 7 12 12 O 1.21662 * 119.99919 * 4.46418 * 11 10 9 13 13 C 1.46891 * 119.99981 * 184.47250 * 11 10 9 14 14 C 1.36126 * 125.43471 * 173.57075 * 13 11 10 15 15 C 1.41704 * 107.74717 * 179.97438 * 14 13 11 16 16 C 1.40017 * 133.35204 * 179.97438 * 15 14 13 17 17 C 1.36579 * 119.83400 * 179.97438 * 16 15 14 18 18 C 1.38853 * 120.59837 * 0.02562 * 17 16 15 19 19 C 1.37847 * 120.63336 * 359.97438 * 18 17 16 20 20 C 1.39092 * 119.81494 * 0.02562 * 19 18 17 21 21 N 1.37832 * 133.16443 * 180.34068 * 20 19 18 22 22 C 1.36899 * 125.62053 * 359.94034 * 21 20 19 23 23 H 1.07993 * 119.99948 * 134.28875 * 22 21 20 24 24 C 1.39008 * 119.99904 * 314.29080 * 22 21 20 25 25 N 1.31351 * 120.00055 * 2.00297 * 24 22 21 26 26 Si 1.86800 * 120.00186 * 182.00700 * 24 22 21 27 27 H 1.48500 * 109.46745 * 4.95608 * 26 24 22 28 28 H 1.48500 * 109.47048 * 124.95379 * 26 24 22 29 29 H 1.48495 * 109.46962 * 244.96046 * 26 24 22 30 30 H 1.08997 * 109.47225 * 298.57642 * 1 2 3 31 31 H 1.09002 * 109.47159 * 58.58768 * 1 2 3 32 32 H 1.09003 * 109.46727 * 178.58000 * 1 2 3 33 33 H 1.08995 * 110.48459 * 145.64782 * 4 2 1 34 34 H 1.09001 * 110.59689 * 23.05594 * 4 2 1 35 35 H 1.09006 * 110.74787 * 203.74553 * 5 4 2 36 36 H 1.08994 * 110.91749 * 80.45345 * 5 4 2 37 37 H 1.08997 * 110.49025 * 279.26985 * 6 5 4 38 38 H 1.08998 * 110.48575 * 156.62404 * 6 5 4 39 39 H 0.96708 * 113.99743 * 183.82403 * 8 7 2 40 40 H 1.09004 * 109.47310 * 62.43400 * 9 7 2 41 41 H 1.09002 * 109.47356 * 302.43178 * 9 7 2 42 42 H 0.97001 * 120.00419 * 355.00984 * 10 9 7 43 43 H 1.07997 * 126.12617 * 359.96138 * 14 13 11 44 44 H 1.08007 * 120.08098 * 359.97438 * 16 15 14 45 45 H 1.07998 * 119.69634 * 179.97438 * 17 16 15 46 46 H 1.08001 * 119.68292 * 179.97438 * 18 17 16 47 47 H 1.07997 * 120.09557 * 179.97438 * 19 18 17 48 48 H 0.96999 * 120.00496 * 185.00410 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 2.3281 -2.1901 -0.7191 6 6 2.8875 -1.9406 0.7035 7 6 2.0571 -0.7535 1.2338 8 8 0.9641 -1.2328 2.0197 9 6 2.9408 0.1703 2.0741 10 7 3.4824 -0.5751 3.2130 11 6 4.3725 0.0095 4.0393 12 8 4.6648 1.1808 3.8880 13 6 4.9897 -0.7675 5.1223 14 6 5.9868 -0.3293 5.9389 15 6 6.2954 -1.3755 6.8435 16 6 7.2170 -1.5005 7.8901 17 6 7.2825 -2.6640 8.6025 18 6 6.4427 -3.7271 8.2983 19 6 5.5272 -3.6279 7.2725 20 6 5.4420 -2.4530 6.5329 21 7 4.6459 -2.0576 5.4795 22 6 3.6769 -2.8187 4.8829 23 1 2.7090 -2.3901 4.6691 24 6 3.9389 -4.1433 4.5523 25 7 5.1024 -4.6762 4.8479 26 14 2.6361 -5.1654 3.6876 27 1 1.4692 -4.3067 3.3616 28 1 3.2005 -5.7300 2.4355 29 1 2.2030 -6.2716 4.5785 30 1 -0.3633 0.4915 0.9024 31 1 -0.3633 0.5356 -0.8771 32 1 -0.3633 -1.0274 -0.0255 33 1 2.9811 -0.3000 -1.5966 34 1 1.3078 -0.7698 -2.0271 35 1 3.0677 -2.6930 -1.3423 36 1 1.4049 -2.7679 -0.6754 37 1 3.9440 -1.6766 0.6571 38 1 2.7402 -2.8197 1.3309 39 1 1.2311 -1.6660 2.8420 40 1 2.3471 1.0090 2.4380 41 1 3.7612 0.5445 1.4617 42 1 3.2004 -1.4894 3.3727 43 1 6.4583 0.6417 5.9035 44 1 7.8745 -0.6789 8.1336 45 1 7.9945 -2.7582 9.4090 46 1 6.5073 -4.6406 8.8710 47 1 4.8785 -4.4603 7.0432 48 1 5.3125 -5.5763 4.5536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590524607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:28 Heat of formation + Delta-G solvation = -54.918075 kcal Electronic energy + Delta-G solvation = -31087.223982 eV Core-core repulsion = 27106.044644 eV Total energy + Delta-G solvation = -3981.179338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.26900 -41.05003 -39.79380 -37.60079 -36.29179 -35.58810 -35.10113 -32.47076 -32.02596 -31.07371 -30.34113 -29.32112 -27.09818 -26.80869 -25.37429 -23.77212 -22.74015 -22.04168 -21.53046 -21.18293 -20.34152 -19.96305 -18.31906 -17.58324 -17.38425 -17.06451 -16.65187 -16.50829 -16.29110 -16.21489 -16.07144 -15.25954 -15.19340 -14.74187 -14.58232 -14.43283 -14.33244 -14.28865 -13.91017 -13.60659 -13.55544 -13.39142 -13.33368 -13.20823 -12.94425 -12.78099 -12.32668 -12.23936 -12.16314 -11.92011 -11.89258 -11.69697 -11.53378 -11.44281 -11.40757 -11.13945 -11.03667 -10.90996 -10.38776 -10.16291 -8.95880 -8.62330 -8.32845 -6.57046 0.11098 1.11429 1.34747 1.35577 1.40361 1.48108 2.03638 2.16731 2.46763 2.78355 2.83906 3.09963 3.36862 3.43777 3.58910 3.63997 4.00471 4.20123 4.23855 4.24622 4.35428 4.38416 4.44582 4.53495 4.57649 4.63166 4.64048 4.74865 4.76923 4.86941 4.94301 4.98494 5.01132 5.03234 5.04703 5.10294 5.21209 5.22126 5.31828 5.34675 5.37717 5.41693 5.46475 5.57021 5.71812 5.91519 5.98579 6.20610 6.22521 6.46807 6.55225 6.58009 6.87757 7.19730 7.46484 8.35419 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.004121 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.922401 B = 6793.073748 C = 8221.143413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.087 0.913 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.157 4.157 7 C 0.128 3.872 8 O -0.553 6.553 9 C 0.094 3.906 10 N -0.718 5.718 11 C 0.593 3.407 12 O -0.580 6.580 13 C -0.045 4.045 14 C -0.177 4.177 15 C -0.157 4.157 16 C -0.096 4.096 17 C -0.152 4.152 18 C -0.142 4.142 19 C -0.073 4.073 20 C 0.079 3.921 21 N -0.275 5.275 22 C -0.389 4.389 23 H 0.115 0.885 24 C 0.027 3.973 25 N -0.848 5.848 26 Si 0.978 3.022 27 H -0.235 1.235 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.374 0.626 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.414 0.586 43 H 0.140 0.860 44 H 0.132 0.868 45 H 0.145 0.855 46 H 0.135 0.865 47 H 0.107 0.893 48 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 0.635 -7.861 9.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.106 0.894 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.195 4.195 7 C 0.087 3.913 8 O -0.360 6.360 9 C -0.029 4.029 10 N -0.377 5.377 11 C 0.382 3.618 12 O -0.461 6.461 13 C -0.160 4.160 14 C -0.205 4.205 15 C -0.162 4.162 16 C -0.114 4.114 17 C -0.171 4.171 18 C -0.162 4.162 19 C -0.093 4.093 20 C -0.035 4.035 21 N 0.060 4.940 22 C -0.516 4.516 23 H 0.132 0.868 24 C -0.184 4.184 25 N -0.477 5.477 26 Si 0.797 3.203 27 H -0.158 1.158 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.222 0.778 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.260 0.740 43 H 0.158 0.842 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.153 0.847 47 H 0.125 0.875 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.109 1.291 -8.686 10.697 hybrid contribution 0.154 -1.260 0.430 1.340 sum -5.955 0.030 -8.256 10.180 Atomic orbital electron populations 1.21474 0.93257 1.01940 1.01350 1.21793 0.97674 0.99081 0.91499 0.89422 1.22451 1.01818 0.94346 0.96504 1.22436 1.01052 0.97739 0.94239 1.23096 0.99704 0.97813 0.98838 1.22157 0.85480 0.92526 0.91101 1.86552 1.33508 1.78813 1.37119 1.22256 0.97642 0.95420 0.87600 1.46561 1.44108 1.18959 1.28100 1.17221 0.78434 0.85323 0.80780 1.90684 1.64733 1.16524 1.74169 1.20440 1.03689 0.89297 1.02553 1.20631 1.01018 0.99687 0.99190 1.18431 1.02099 0.94505 1.01131 1.20448 0.97695 0.98785 0.94506 1.20734 1.01348 0.93266 1.01728 1.21029 0.97095 0.99795 0.98323 1.20258 1.00097 0.94591 0.94386 1.18732 0.97251 0.96239 0.91304 1.40126 1.24960 1.08725 1.20227 1.19896 0.94389 0.94385 1.42923 0.86823 1.26515 0.98925 0.97693 0.95288 1.70059 1.22574 1.16795 1.38284 0.85110 0.78387 0.78746 0.78015 1.15771 1.19476 1.19721 0.93452 0.91331 0.92885 0.90603 0.89345 0.90566 0.91148 0.91442 0.92133 0.77754 0.91451 0.90776 0.74032 0.84185 0.85030 0.83776 0.84729 0.87530 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.09 71.98 0.58 -1.88 16 2 C -0.08 -1.71 3.16 -10.07 -0.03 -1.74 16 3 H 0.09 1.72 7.67 -2.39 -0.02 1.71 16 4 C -0.11 -2.01 6.37 31.67 0.20 -1.81 16 5 C -0.12 -2.43 6.91 31.88 0.22 -2.21 16 6 C -0.16 -4.15 5.51 31.67 0.17 -3.98 16 7 C 0.13 3.36 1.02 -10.07 -0.01 3.35 16 8 O -0.55 -15.36 11.14 -148.98 -1.66 -17.02 16 9 C 0.09 2.95 4.45 86.38 0.38 3.34 16 10 N -0.72 -27.23 5.01 -466.89 -2.34 -29.57 16 11 C 0.59 27.08 7.76 86.51 0.67 27.75 16 12 O -0.58 -28.17 16.85 -4.23 -0.07 -28.24 16 13 C -0.05 -2.23 6.77 39.91 0.27 -1.96 16 14 C -0.18 -8.49 10.55 22.63 0.24 -8.25 16 15 C -0.16 -7.43 6.16 -21.33 -0.13 -7.56 16 16 C -0.10 -3.77 10.06 22.31 0.22 -3.55 16 17 C -0.15 -5.42 9.97 22.03 0.22 -5.20 16 18 C -0.14 -5.50 10.02 22.32 0.22 -5.27 16 19 C -0.07 -3.41 8.46 22.38 0.19 -3.22 16 20 C 0.08 3.97 6.04 39.06 0.24 4.21 16 21 N -0.28 -13.77 2.83 -331.34 -0.94 -14.71 16 22 C -0.39 -17.98 7.66 84.09 0.64 -17.33 16 23 H 0.11 4.80 6.46 -2.91 -0.02 4.78 16 24 C 0.03 1.19 5.09 84.95 0.43 1.62 16 25 N -0.85 -41.02 10.06 21.67 0.22 -40.81 16 26 Si 0.98 33.74 29.56 68.60 2.03 35.76 16 27 H -0.24 -7.22 7.11 99.48 0.71 -6.52 16 28 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 29 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 30 H 0.05 1.06 7.87 -2.39 -0.02 1.04 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.14 7.87 -2.39 -0.02 1.12 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.26 7.85 -2.39 -0.02 1.25 16 35 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.92 7.85 -2.39 -0.02 1.90 16 38 H 0.06 1.75 8.07 -2.39 -0.02 1.73 16 39 H 0.37 10.29 7.80 -74.05 -0.58 9.71 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.41 15.53 3.07 -92.71 -0.28 15.24 16 43 H 0.14 6.22 8.06 -2.91 -0.02 6.20 16 44 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 45 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 46 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 47 H 0.11 5.15 6.48 -2.91 -0.02 5.13 16 48 H 0.29 12.87 8.31 -92.71 -0.77 12.10 16 Total: -1.00 -60.32 381.21 2.10 -58.22 By element: Atomic # 1 Polarization: 59.93 SS G_CDS: 0.13 Total: 60.06 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.74 Total: -23.70 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -3.06 Total: -85.09 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -1.73 Total: -45.26 kcal Atomic # 14 Polarization: 33.74 SS G_CDS: 2.03 Total: 35.76 kcal Total: -60.32 2.10 -58.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590524607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.304 kcal (2) G-P(sol) polarization free energy of solvation -60.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds