Wall clock time and date at job start Wed Apr 1 2020 01:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46366 * 2 1 4 4 C 1.53048 * 109.45910 * 119.97043 * 2 1 3 5 5 C 1.53193 * 109.31044 * 58.65714 * 4 2 1 6 6 N 1.46922 * 108.77784 * 54.63651 * 5 4 2 7 7 C 1.34775 * 120.63592 * 126.38656 * 6 5 4 8 8 O 1.21666 * 120.00510 * 181.34520 * 7 6 5 9 9 C 1.46889 * 119.99660 * 1.35139 * 7 6 5 10 10 C 1.36118 * 125.44112 * 26.26044 * 9 7 6 11 11 C 1.41699 * 107.75344 * 180.02562 * 10 9 7 12 12 C 1.40019 * 133.35251 * 180.02562 * 11 10 9 13 13 C 1.36573 * 119.83080 * 180.02562 * 12 11 10 14 14 C 1.38855 * 120.60240 * 359.96703 * 13 12 11 15 15 C 1.37844 * 120.63171 * 0.02562 * 14 13 12 16 16 C 1.39089 * 119.81401 * 359.97438 * 15 14 13 17 17 N 1.37837 * 133.16479 * 180.34154 * 16 15 14 18 18 C 1.36888 * 125.61788 * 359.94012 * 17 16 15 19 19 H 1.07997 * 119.99981 * 213.69238 * 18 17 16 20 20 C 1.39013 * 120.00354 * 33.69987 * 18 17 16 21 21 N 1.31350 * 119.99652 * 21.71423 * 20 18 17 22 22 Si 1.86797 * 120.00080 * 201.71954 * 20 18 17 23 23 H 1.48496 * 109.47499 * 59.99726 * 22 20 18 24 24 H 1.48504 * 109.47155 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47243 * 299.99406 * 22 20 18 26 26 C 1.46924 * 118.73932 * 306.38945 * 6 5 4 27 27 C 1.53038 * 109.45986 * 240.03892 * 2 1 3 28 28 H 1.09005 * 109.49771 * 181.39361 * 27 2 1 29 29 C 1.52991 * 109.49989 * 61.33147 * 27 2 1 30 30 O 1.42903 * 109.47724 * 175.00030 * 29 27 2 31 31 H 1.08999 * 109.47052 * 300.02770 * 1 2 3 32 32 H 1.08997 * 109.47247 * 60.02842 * 1 2 3 33 33 H 1.09009 * 109.46938 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.49685 * 178.60681 * 4 2 1 35 35 H 1.08994 * 109.49828 * 298.70593 * 4 2 1 36 36 H 1.09005 * 109.58380 * 174.41705 * 5 4 2 37 37 H 1.08991 * 109.59015 * 294.84337 * 5 4 2 38 38 H 1.08002 * 126.12063 * 0.02930 * 10 9 7 39 39 H 1.08003 * 120.08686 * 359.97267 * 12 11 10 40 40 H 1.08001 * 119.69926 * 179.97438 * 13 12 11 41 41 H 1.08005 * 119.68365 * 179.97438 * 14 13 12 42 42 H 1.07998 * 120.09493 * 179.97438 * 15 14 13 43 43 H 0.97001 * 119.99660 * 183.11509 * 21 20 18 44 44 H 1.09001 * 109.58725 * 293.82278 * 26 6 5 45 45 H 1.08999 * 109.59305 * 173.39636 * 26 6 5 46 46 H 1.09004 * 109.47031 * 295.00121 * 29 27 2 47 47 H 1.08997 * 109.47255 * 54.99451 * 29 27 2 48 48 H 0.96696 * 114.00347 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 1.2501 5 6 1.4995 -2.1543 1.2641 6 7 1.8625 -2.8089 -0.0002 7 6 2.5161 -3.9876 -0.0004 8 8 2.8327 -4.5075 -1.0538 9 6 2.8460 -4.6446 1.2713 10 6 2.1664 -4.4879 2.4403 11 6 2.8026 -5.2891 3.4207 12 6 2.5538 -5.5256 4.7781 13 6 3.3637 -6.3723 5.4798 14 6 4.4337 -7.0032 4.8593 15 6 4.6987 -6.7864 3.5240 16 6 3.8878 -5.9283 2.7886 17 7 3.8931 -5.5244 1.4708 18 6 4.7903 -5.9251 0.5177 19 1 5.0913 -5.2412 -0.2620 20 6 5.3138 -7.2124 0.5533 21 7 4.6741 -8.1639 1.1941 22 14 6.9270 -7.5889 -0.3099 23 1 8.0055 -6.7469 0.2672 24 1 7.2655 -9.0227 -0.1231 25 1 6.7928 -7.2963 -1.7595 26 6 1.4996 -2.1541 -1.2644 27 6 2.0398 -0.7206 -1.2501 28 1 3.1296 -0.7427 -1.2384 29 6 1.5576 0.0201 -2.4989 30 8 2.1287 -0.5839 -3.6614 31 1 -0.3633 0.5143 0.8897 32 1 -0.3633 0.5134 -0.8902 33 1 -0.3633 -1.0278 0.0005 34 1 3.1296 -0.7429 1.2383 35 1 1.6957 -0.1937 2.1398 36 1 1.9382 -2.7020 2.0982 37 1 0.4147 -2.1349 1.3672 38 1 1.2977 -3.8646 2.5931 39 1 1.7240 -5.0391 5.2693 40 1 3.1701 -6.5529 6.5269 41 1 5.0650 -7.6696 5.4285 42 1 5.5335 -7.2813 3.0502 43 1 5.0613 -9.0510 1.2574 44 1 0.4147 -2.1347 -1.3675 45 1 1.9382 -2.7016 -2.0987 46 1 0.4706 -0.0357 -2.5574 47 1 1.8653 1.0642 -2.4436 48 1 1.8654 -0.1647 -4.4920 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598783473.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:24 Heat of formation + Delta-G solvation = -9.566186 kcal Electronic energy + Delta-G solvation = -30970.532169 eV Core-core repulsion = 26991.319436 eV Total energy + Delta-G solvation = -3979.212733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.72509 -39.69600 -37.74591 -36.44842 -35.75556 -34.05552 -33.25164 -31.57604 -30.59745 -28.97575 -28.35547 -27.83246 -25.78657 -24.99055 -24.67044 -22.39056 -22.01991 -20.90682 -19.98331 -19.38975 -18.34003 -17.60409 -17.41377 -16.28080 -15.99391 -15.60341 -15.14341 -15.03191 -14.79897 -14.68864 -14.42779 -14.09487 -13.87513 -13.55428 -13.47105 -13.04229 -12.87731 -12.83028 -12.64047 -12.34543 -12.24320 -11.89508 -11.76486 -11.63327 -11.39266 -11.18198 -11.13459 -11.02257 -10.79906 -10.72021 -10.59383 -10.40234 -10.31256 -10.20693 -10.03204 -9.72294 -9.07466 -8.96007 -8.58991 -8.17253 -7.16450 -6.80145 -6.52097 -4.33711 1.89811 2.79731 3.07970 3.08062 3.10941 3.17834 3.35066 3.89783 4.04718 4.18305 4.62775 4.70038 4.71124 4.78898 4.92621 4.98238 5.12997 5.19411 5.27647 5.31756 5.45112 5.47044 5.51334 5.55633 5.66603 5.84654 5.86527 5.86750 5.92585 5.99517 6.05190 6.13348 6.14790 6.21476 6.30973 6.34020 6.42391 6.59539 6.71842 6.86672 6.99915 7.06082 7.12454 7.20942 7.50113 7.51657 7.61154 7.69761 7.86428 8.01313 8.12705 8.43850 8.78906 8.99744 9.34330 10.23370 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.004118 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.962287 B = 6797.294899 C = 8760.392842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.128 4.128 5 C 0.070 3.930 6 N -0.609 5.609 7 C 0.590 3.410 8 O -0.528 6.528 9 C -0.020 4.020 10 C -0.225 4.225 11 C -0.121 4.121 12 C -0.095 4.095 13 C -0.154 4.154 14 C -0.157 4.157 15 C -0.046 4.046 16 C 0.078 3.922 17 N -0.225 5.225 18 C -0.334 4.334 19 H 0.112 0.888 20 C 0.053 3.947 21 N -0.814 5.814 22 Si 0.927 3.073 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.264 1.264 26 C 0.126 3.874 27 C -0.098 4.098 28 H 0.081 0.919 29 C 0.083 3.917 30 O -0.569 6.569 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.064 0.936 38 H 0.140 0.860 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.282 0.718 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.045 0.955 48 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.363 14.679 -0.113 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.167 4.167 5 C -0.052 4.052 6 N -0.343 5.343 7 C 0.380 3.620 8 O -0.404 6.404 9 C -0.138 4.138 10 C -0.252 4.252 11 C -0.126 4.126 12 C -0.113 4.113 13 C -0.174 4.174 14 C -0.178 4.178 15 C -0.065 4.065 16 C -0.036 4.036 17 N 0.115 4.885 18 C -0.463 4.463 19 H 0.130 0.870 20 C -0.160 4.160 21 N -0.442 5.442 22 Si 0.750 3.250 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.188 1.188 26 C 0.003 3.997 27 C -0.117 4.117 28 H 0.100 0.900 29 C 0.005 3.995 30 O -0.374 6.374 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.157 0.843 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.132 0.868 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.693 13.617 -0.538 14.768 hybrid contribution 0.259 0.097 -0.850 0.894 sum -5.434 13.714 -1.387 14.816 Atomic orbital electron populations 1.22020 0.95208 1.02520 1.01488 1.21065 0.95945 0.98935 0.94350 0.91193 1.21945 1.01496 0.96014 0.97195 1.22774 1.00029 0.93557 0.88855 1.47716 1.59047 1.20958 1.06618 1.17322 0.76827 0.79849 0.87994 1.90785 1.52870 1.63765 1.32987 1.19531 0.94941 1.05119 0.94259 1.20537 1.04253 1.08437 0.92001 1.17940 0.98690 1.02060 0.93863 1.19995 0.99258 0.99698 0.92398 1.20259 0.97685 1.00875 0.98535 1.20535 0.99735 1.03096 0.94447 1.20196 0.98820 0.95362 0.92162 1.18084 0.99814 1.02340 0.83408 1.39956 1.16654 1.26248 1.05626 1.19845 1.19265 0.98251 1.08930 0.87033 1.25570 0.99354 0.94273 0.96803 1.70069 1.34809 1.02393 1.36965 0.85985 0.80726 0.77857 0.80400 1.18948 1.20129 1.18833 1.21446 0.98885 0.91800 0.87556 1.21516 1.01883 0.95489 0.92810 0.90025 1.22222 0.96540 0.95297 0.85452 1.86577 1.73996 1.60472 1.16322 0.92486 0.92829 0.91768 0.91344 0.90686 0.85137 0.91822 0.84286 0.87942 0.88077 0.87812 0.86772 0.90742 0.92135 0.88529 0.93353 0.93675 0.77739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.11 37.16 0.30 -1.04 16 2 C -0.08 -0.85 2.71 -90.58 -0.25 -1.09 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.13 -1.47 5.63 -26.61 -0.15 -1.62 16 5 C 0.07 0.98 4.80 -3.71 -0.02 0.96 16 6 N -0.61 -10.66 2.97 -174.24 -0.52 -11.18 16 7 C 0.59 13.54 7.52 -12.76 -0.10 13.45 16 8 O -0.53 -14.04 15.02 5.22 0.08 -13.96 16 9 C -0.02 -0.49 6.42 -82.25 -0.53 -1.02 16 10 C -0.23 -4.84 8.47 -39.02 -0.33 -5.17 16 11 C -0.12 -2.79 6.16 -106.89 -0.66 -3.45 16 12 C -0.09 -1.89 10.06 -39.52 -0.40 -2.29 16 13 C -0.15 -2.98 9.97 -39.95 -0.40 -3.38 16 14 C -0.16 -3.28 10.02 -39.50 -0.40 -3.67 16 15 C -0.05 -1.11 8.47 -39.41 -0.33 -1.44 16 16 C 0.08 2.01 6.12 -83.83 -0.51 1.49 16 17 N -0.23 -6.08 2.86 -56.08 -0.16 -6.25 16 18 C -0.33 -9.27 8.84 -15.01 -0.13 -9.40 16 19 H 0.11 3.15 7.40 -52.49 -0.39 2.76 16 20 C 0.05 1.38 4.32 -17.47 -0.08 1.31 16 21 N -0.81 -21.92 10.65 55.50 0.59 -21.33 16 22 Si 0.93 20.00 29.61 -169.99 -5.03 14.97 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 25 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 26 C 0.13 1.93 5.09 -3.71 -0.02 1.91 16 27 C -0.10 -1.21 2.35 -90.50 -0.21 -1.42 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 C 0.08 0.82 5.96 37.15 0.22 1.04 16 30 O -0.57 -6.52 13.31 -35.23 -0.47 -6.99 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.40 6.57 -51.93 -0.34 0.06 16 33 H 0.06 0.63 4.98 -51.92 -0.26 0.37 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.13 2.04 3.47 -51.93 -0.18 1.86 16 37 H 0.06 0.77 6.69 -51.93 -0.35 0.42 16 38 H 0.14 2.44 5.69 -52.49 -0.30 2.14 16 39 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 42 H 0.11 2.83 6.12 -52.49 -0.32 2.51 16 43 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.06 0.82 6.69 -51.93 -0.35 0.47 16 45 H 0.10 1.79 6.84 -51.93 -0.36 1.44 16 46 H 0.05 0.41 6.73 -51.93 -0.35 0.06 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.38 2.40 9.12 45.56 0.42 2.81 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -33.06 368.41 -9.65 -42.71 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.71 Total: 11.32 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -3.98 Total: -14.84 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.09 Total: -38.75 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.39 Total: -20.96 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.06 -9.65 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598783473.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.146 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds