Wall clock time and date at job start Wed Apr 1 2020 01:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46141 * 2 1 4 4 C 1.53039 * 109.46015 * 119.96055 * 2 1 3 5 5 C 1.53198 * 109.31029 * 181.38202 * 4 2 1 6 6 N 1.46928 * 108.77296 * 305.36530 * 5 4 2 7 7 C 1.36939 * 120.62789 * 233.62527 * 6 5 4 8 8 H 1.08003 * 119.99832 * 27.66737 * 7 6 5 9 9 C 1.38815 * 120.00268 * 207.66074 * 7 6 5 10 10 N 1.31621 * 119.99487 * 17.38120 * 9 7 6 11 11 Si 1.86799 * 119.99959 * 197.37556 * 9 7 6 12 12 H 1.48495 * 109.47559 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46904 * 120.00434 * 11 9 7 14 14 H 1.48505 * 109.47019 * 239.99816 * 11 9 7 15 15 C 1.46924 * 118.74260 * 53.61405 * 6 5 4 16 16 C 1.53041 * 109.45421 * 240.02709 * 2 1 3 17 17 H 1.08999 * 109.49810 * 58.66733 * 16 2 1 18 18 N 1.46498 * 109.50226 * 298.59834 * 16 2 1 19 19 C 1.34771 * 120.00039 * 155.00272 * 18 16 2 20 20 O 1.21603 * 120.00253 * 0.02562 * 19 18 16 21 21 C 1.47430 * 119.99618 * 179.97438 * 19 18 16 22 22 C 1.41286 * 126.41785 * 0.02758 * 21 19 18 23 23 N 1.30453 * 108.02534 * 179.97438 * 22 21 19 24 24 N 1.39930 * 108.89454 * 359.97438 * 23 22 21 25 25 C 1.46503 * 125.75236 * 180.02562 * 24 23 22 26 26 C 1.34259 * 108.49325 * 359.75461 * 24 23 22 27 27 C 1.50705 * 126.29128 * 180.23881 * 26 24 23 28 28 F 1.39900 * 109.46623 * 120.18014 * 27 26 24 29 29 F 1.39895 * 109.47089 * 240.18247 * 27 26 24 30 30 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46896 * 299.97247 * 1 2 3 32 32 H 1.08999 * 109.47051 * 59.96879 * 1 2 3 33 33 H 1.08992 * 109.49997 * 301.33245 * 4 2 1 34 34 H 1.09001 * 109.49845 * 61.43158 * 4 2 1 35 35 H 1.09001 * 109.58494 * 185.57998 * 5 4 2 36 36 H 1.08998 * 109.70284 * 65.22259 * 5 4 2 37 37 H 0.96997 * 119.99492 * 179.97438 * 10 9 7 38 38 H 1.08994 * 109.58786 * 186.60273 * 15 6 5 39 39 H 1.08997 * 109.58528 * 66.17053 * 15 6 5 40 40 H 0.97000 * 119.99300 * 335.00364 * 18 16 2 41 41 H 1.08002 * 125.98805 * 0.02562 * 22 21 19 42 42 H 1.09003 * 109.46761 * 90.02681 * 25 24 23 43 43 H 1.08994 * 109.47245 * 210.02844 * 25 24 23 44 44 H 1.09003 * 109.47140 * 330.03060 * 25 24 23 45 45 H 1.08993 * 109.47131 * 0.18076 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0678 -1.2489 -0.0001 7 6 4.9757 -2.2740 0.0000 8 1 5.0086 -2.9662 0.8285 9 6 5.8537 -2.4237 -1.0647 10 7 6.0602 -1.4220 -1.8932 11 14 6.7423 -4.0466 -1.3215 12 1 6.3394 -5.0049 -0.2611 13 1 6.3847 -4.6017 -2.6516 14 1 8.2091 -3.8236 -1.2564 15 6 3.5713 -0.6888 -1.2643 16 6 2.0397 -0.7209 -1.2500 17 1 1.6571 -0.2209 -2.1398 18 7 1.5793 -2.1116 -1.2345 19 6 1.4508 -2.7918 -2.3908 20 8 1.7173 -2.2514 -3.4471 21 6 0.9880 -4.1915 -2.3750 22 6 0.6434 -4.9482 -1.2327 23 7 0.2837 -6.1376 -1.6298 24 7 0.3790 -6.1978 -3.0246 25 6 0.0626 -7.3627 -3.8547 26 6 0.8035 -5.0061 -3.4742 27 6 1.0395 -4.6284 -4.9140 28 9 0.2156 -3.5502 -5.2542 29 9 2.3792 -4.2645 -5.0870 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6573 -0.2205 2.1398 34 1 1.6978 -1.7555 1.2385 35 1 3.9418 -1.2844 2.0984 36 1 3.9165 0.3402 1.3684 37 1 6.6740 -1.5265 -2.6369 38 1 3.9415 -1.2848 -2.0984 39 1 3.9143 0.3407 -1.3675 40 1 1.3671 -2.5427 -0.3919 41 1 0.6719 -4.6022 -0.2100 42 1 -0.9886 -7.3299 -4.1413 43 1 0.6839 -7.3503 -4.7502 44 1 0.2570 -8.2747 -3.2902 45 1 0.8084 -5.4789 -5.5552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968529607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:04 Heat of formation + Delta-G solvation = -30.826829 kcal Electronic energy + Delta-G solvation = -32301.450856 eV Core-core repulsion = 27799.379414 eV Total energy + Delta-G solvation = -4502.071442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.82190 -46.83324 -41.50383 -39.26072 -37.27758 -34.09607 -33.83902 -32.60562 -31.32312 -30.93985 -29.27300 -27.54642 -26.91646 -26.33775 -24.02071 -22.80593 -21.98035 -21.02137 -20.89847 -19.82414 -18.55937 -18.21759 -17.23746 -17.18160 -16.68256 -16.36770 -15.70074 -15.23920 -14.82637 -14.77976 -14.20392 -14.07387 -13.87363 -13.72788 -13.59692 -13.49413 -13.19342 -13.14645 -13.08925 -13.00190 -12.67051 -12.65332 -12.48995 -11.87749 -11.52477 -11.36757 -11.29758 -11.07860 -11.00285 -10.85246 -10.67750 -10.43991 -10.14636 -9.85535 -9.79915 -9.61710 -9.42929 -9.25674 -8.79353 -8.38162 -8.19833 -6.57129 -5.69290 -3.11547 1.19948 1.99020 2.19170 3.43057 3.44935 3.50142 3.52271 3.73277 3.88667 3.98388 4.22972 4.54100 4.57103 4.72895 4.81893 4.97694 5.01782 5.14599 5.26096 5.30663 5.34991 5.41692 5.50052 5.62978 5.72418 5.94489 5.99676 6.06704 6.20825 6.25014 6.36980 6.43857 6.44845 6.51041 6.62742 6.74202 6.81217 6.95562 7.09366 7.30141 7.48418 7.77473 7.89349 8.23290 8.54725 8.93853 9.29499 9.94030 10.49330 11.38593 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.009633 B = 0.005407 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.052392 B = 5177.637721 C = 6391.725605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.252 4.252 8 H 0.063 0.937 9 C 0.008 3.992 10 N -0.896 5.896 11 Si 0.893 3.107 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.291 1.291 15 C 0.160 3.840 16 C 0.129 3.871 17 H 0.077 0.923 18 N -0.691 5.691 19 C 0.583 3.417 20 O -0.533 6.533 21 C -0.223 4.223 22 C 0.082 3.918 23 N -0.278 5.278 24 N -0.348 5.348 25 C 0.090 3.910 26 C 0.048 3.952 27 C 0.353 3.647 28 F -0.177 7.177 29 F -0.170 7.170 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.017 0.983 37 H 0.253 0.747 38 H 0.098 0.902 39 H 0.024 0.976 40 H 0.392 0.608 41 H 0.196 0.804 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.676 -7.754 -1.864 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.381 4.381 8 H 0.081 0.919 9 C -0.191 4.191 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.218 1.218 15 C 0.033 3.967 16 C 0.023 3.977 17 H 0.095 0.905 18 N -0.341 5.341 19 C 0.368 3.632 20 O -0.411 6.411 21 C -0.238 4.238 22 C -0.105 4.105 23 N -0.098 5.098 24 N -0.129 5.129 25 C -0.051 4.051 26 C -0.085 4.085 27 C 0.297 3.703 28 F -0.158 7.158 29 F -0.151 7.151 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.035 0.965 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.042 0.958 40 H 0.227 0.773 41 H 0.213 0.787 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.776 -8.595 -2.480 18.136 hybrid contribution 0.814 -0.293 0.059 0.867 sum -14.962 -8.888 -2.422 17.571 Atomic orbital electron populations 1.21845 0.96024 1.01354 1.00890 1.21315 0.94566 0.99880 0.95541 0.90464 1.22076 0.99233 0.99363 0.96094 1.20924 0.90703 0.96497 0.90294 1.43982 1.48264 1.39549 0.99155 1.19087 1.09954 1.03034 1.06062 0.91930 1.24966 0.97215 0.97035 0.99862 1.70003 1.37418 1.28866 1.17692 0.86369 0.79181 0.84268 0.77846 1.20415 1.21573 1.21798 1.21214 0.86757 0.97708 0.90986 1.21774 0.98825 0.80237 0.96853 0.90531 1.45528 1.67016 1.13953 1.07635 1.17014 0.77810 0.83778 0.84579 1.90813 1.50609 1.69198 1.30464 1.20404 1.14119 0.97605 0.91672 1.24107 0.96321 0.90273 0.99756 1.77192 1.24076 1.20832 0.87701 1.48193 1.49795 1.09369 1.05541 1.22079 1.02482 0.86432 0.94064 1.21866 1.02005 0.87912 0.96677 1.19303 0.74793 0.87135 0.89062 1.93078 1.71670 1.58624 1.92413 1.93147 1.33403 1.93005 1.95573 0.93045 0.93248 0.93101 0.92842 0.92779 0.92912 0.96497 0.93690 0.88354 0.95796 0.77325 0.78721 0.89759 0.89197 0.88124 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.05 37.16 0.34 -1.53 16 2 C -0.09 -1.48 2.48 -90.58 -0.22 -1.70 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.13 -2.01 5.20 -26.61 -0.14 -2.15 16 5 C 0.14 2.83 6.52 -3.71 -0.02 2.81 16 6 N -0.59 -14.27 2.91 -172.31 -0.50 -14.77 16 7 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 8 H 0.06 1.68 7.89 -52.48 -0.41 1.27 16 9 C 0.01 0.24 4.91 -17.43 -0.09 0.16 16 10 N -0.90 -26.98 11.19 55.49 0.62 -26.36 16 11 Si 0.89 22.69 29.59 -169.99 -5.03 17.66 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 C 0.16 3.88 4.91 -3.71 -0.02 3.87 16 16 C 0.13 2.49 2.24 -67.81 -0.15 2.33 16 17 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 18 N -0.69 -12.60 4.24 -54.76 -0.23 -12.84 16 19 C 0.58 11.63 7.78 -12.52 -0.10 11.53 16 20 O -0.53 -12.40 13.67 5.28 0.07 -12.33 16 21 C -0.22 -3.80 6.13 -105.07 -0.64 -4.45 16 22 C 0.08 1.18 11.50 -16.98 -0.20 0.99 16 23 N -0.28 -3.91 12.50 30.86 0.39 -3.53 16 24 N -0.35 -4.35 3.98 -63.34 -0.25 -4.60 16 25 C 0.09 0.60 11.10 59.85 0.66 1.27 16 26 C 0.05 0.72 6.44 -81.60 -0.53 0.19 16 27 C 0.35 4.96 4.95 36.01 0.18 5.14 16 28 F -0.18 -2.84 16.24 2.25 0.04 -2.80 16 29 F -0.17 -3.13 16.22 2.25 0.04 -3.09 16 30 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 35 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.10 2.84 6.03 -51.93 -0.31 2.53 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.39 6.31 5.59 -40.82 -0.23 6.08 16 41 H 0.20 2.23 7.50 -52.49 -0.39 1.83 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.40 7.04 -51.93 -0.37 0.03 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.11 0.91 6.73 -51.93 -0.35 0.56 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -36.10 368.34 -6.49 -42.59 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.11 Total: 3.07 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -1.07 Total: 11.44 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: 0.02 Total: -62.09 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.07 Total: -12.33 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.07 Total: -5.90 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.10 -6.49 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968529607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.768 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds