Wall clock time and date at job start Wed Apr 1 2020 01:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46141 * 2 1 4 4 C 1.53039 * 109.46015 * 119.96055 * 2 1 3 5 5 C 1.53198 * 109.31029 * 181.38202 * 4 2 1 6 6 N 1.46928 * 108.77296 * 305.36530 * 5 4 2 7 7 C 1.36939 * 120.62789 * 233.62527 * 6 5 4 8 8 H 1.08003 * 119.99832 * 27.66737 * 7 6 5 9 9 C 1.38815 * 120.00268 * 207.66074 * 7 6 5 10 10 N 1.31621 * 119.99487 * 17.38120 * 9 7 6 11 11 Si 1.86799 * 119.99959 * 197.37556 * 9 7 6 12 12 H 1.48495 * 109.47559 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46904 * 120.00434 * 11 9 7 14 14 H 1.48505 * 109.47019 * 239.99816 * 11 9 7 15 15 C 1.46924 * 118.74260 * 53.61405 * 6 5 4 16 16 C 1.53041 * 109.45421 * 240.02709 * 2 1 3 17 17 H 1.08999 * 109.49810 * 58.66733 * 16 2 1 18 18 N 1.46498 * 109.50226 * 298.59834 * 16 2 1 19 19 C 1.34771 * 120.00039 * 155.00272 * 18 16 2 20 20 O 1.21603 * 120.00253 * 0.02562 * 19 18 16 21 21 C 1.47430 * 119.99618 * 179.97438 * 19 18 16 22 22 C 1.41286 * 126.41785 * 0.02758 * 21 19 18 23 23 N 1.30453 * 108.02534 * 179.97438 * 22 21 19 24 24 N 1.39930 * 108.89454 * 359.97438 * 23 22 21 25 25 C 1.46503 * 125.75236 * 180.02562 * 24 23 22 26 26 C 1.34259 * 108.49325 * 359.75461 * 24 23 22 27 27 C 1.50705 * 126.29128 * 180.23881 * 26 24 23 28 28 F 1.39900 * 109.46623 * 120.18014 * 27 26 24 29 29 F 1.39895 * 109.47089 * 240.18247 * 27 26 24 30 30 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46896 * 299.97247 * 1 2 3 32 32 H 1.08999 * 109.47051 * 59.96879 * 1 2 3 33 33 H 1.08992 * 109.49997 * 301.33245 * 4 2 1 34 34 H 1.09001 * 109.49845 * 61.43158 * 4 2 1 35 35 H 1.09001 * 109.58494 * 185.57998 * 5 4 2 36 36 H 1.08998 * 109.70284 * 65.22259 * 5 4 2 37 37 H 0.96997 * 119.99492 * 179.97438 * 10 9 7 38 38 H 1.08994 * 109.58786 * 186.60273 * 15 6 5 39 39 H 1.08997 * 109.58528 * 66.17053 * 15 6 5 40 40 H 0.97000 * 119.99300 * 335.00364 * 18 16 2 41 41 H 1.08002 * 125.98805 * 0.02562 * 22 21 19 42 42 H 1.09003 * 109.46761 * 90.02681 * 25 24 23 43 43 H 1.08994 * 109.47245 * 210.02844 * 25 24 23 44 44 H 1.09003 * 109.47140 * 330.03060 * 25 24 23 45 45 H 1.08993 * 109.47131 * 0.18076 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0678 -1.2489 -0.0001 7 6 4.9757 -2.2740 0.0000 8 1 5.0086 -2.9662 0.8285 9 6 5.8537 -2.4237 -1.0647 10 7 6.0602 -1.4220 -1.8932 11 14 6.7423 -4.0466 -1.3215 12 1 6.3394 -5.0049 -0.2611 13 1 6.3847 -4.6017 -2.6516 14 1 8.2091 -3.8236 -1.2564 15 6 3.5713 -0.6888 -1.2643 16 6 2.0397 -0.7209 -1.2500 17 1 1.6571 -0.2209 -2.1398 18 7 1.5793 -2.1116 -1.2345 19 6 1.4508 -2.7918 -2.3908 20 8 1.7173 -2.2514 -3.4471 21 6 0.9880 -4.1915 -2.3750 22 6 0.6434 -4.9482 -1.2327 23 7 0.2837 -6.1376 -1.6298 24 7 0.3790 -6.1978 -3.0246 25 6 0.0626 -7.3627 -3.8547 26 6 0.8035 -5.0061 -3.4742 27 6 1.0395 -4.6284 -4.9140 28 9 0.2156 -3.5502 -5.2542 29 9 2.3792 -4.2645 -5.0870 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6573 -0.2205 2.1398 34 1 1.6978 -1.7555 1.2385 35 1 3.9418 -1.2844 2.0984 36 1 3.9165 0.3402 1.3684 37 1 6.6740 -1.5265 -2.6369 38 1 3.9415 -1.2848 -2.0984 39 1 3.9143 0.3407 -1.3675 40 1 1.3671 -2.5427 -0.3919 41 1 0.6719 -4.6022 -0.2100 42 1 -0.9886 -7.3299 -4.1413 43 1 0.6839 -7.3503 -4.7502 44 1 0.2570 -8.2747 -3.2902 45 1 0.8084 -5.4789 -5.5552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968529607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:03 Heat of formation + Delta-G solvation = -56.054160 kcal Electronic energy + Delta-G solvation = -32302.544795 eV Core-core repulsion = 27799.379414 eV Total energy + Delta-G solvation = -4503.165381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.02051 -48.06750 -42.58985 -40.78560 -38.86003 -35.88869 -34.88042 -34.09843 -32.80268 -32.42727 -30.83590 -28.97684 -28.09796 -27.37178 -25.80786 -24.23298 -23.38816 -22.68536 -22.00053 -21.07476 -20.19865 -19.33277 -18.58953 -18.38923 -18.35826 -17.65637 -16.90793 -16.71274 -16.46692 -16.02670 -15.72672 -15.59121 -15.28074 -15.11572 -14.90187 -14.83776 -14.67295 -14.51030 -14.39460 -14.07480 -13.95176 -13.61290 -13.60442 -13.51424 -13.11324 -12.96660 -12.73775 -12.60228 -12.50002 -12.41081 -12.18900 -12.15425 -11.90838 -11.52024 -11.25282 -11.02439 -10.83752 -10.80212 -10.52035 -10.04195 -9.71193 -8.61432 -7.84057 -5.27743 0.05544 1.02783 1.07738 1.37268 1.41355 1.49021 2.30402 2.47490 2.49353 2.59100 2.95725 3.29875 3.32316 3.48567 3.72508 3.82495 3.88050 3.95896 4.04342 4.08697 4.17848 4.32693 4.34785 4.55077 4.57834 4.61382 4.71688 4.76507 4.88255 4.97086 4.99898 5.14476 5.17187 5.21220 5.29106 5.31688 5.51345 5.53008 5.56844 5.63618 5.77140 5.81198 6.23316 6.41894 6.77640 7.17102 7.46465 7.91305 8.41568 9.20859 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.009633 B = 0.005407 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.052392 B = 5177.637721 C = 6391.725605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.075 0.925 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.243 4.243 8 H 0.071 0.929 9 C -0.051 4.051 10 N -0.933 5.933 11 Si 0.948 3.052 12 H -0.260 1.260 13 H -0.305 1.305 14 H -0.291 1.291 15 C 0.172 3.828 16 C 0.140 3.860 17 H 0.061 0.939 18 N -0.682 5.682 19 C 0.576 3.424 20 O -0.579 6.579 21 C -0.266 4.266 22 C 0.084 3.916 23 N -0.286 5.286 24 N -0.331 5.331 25 C 0.071 3.929 26 C 0.046 3.954 27 C 0.341 3.659 28 F -0.192 7.192 29 F -0.202 7.202 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.012 0.988 37 H 0.243 0.757 38 H 0.047 0.953 39 H -0.005 1.005 40 H 0.404 0.596 41 H 0.219 0.781 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.241 -9.949 -0.160 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.094 0.906 4 C -0.154 4.154 5 C 0.011 3.989 6 N -0.322 5.322 7 C -0.373 4.373 8 H 0.089 0.911 9 C -0.246 4.246 10 N -0.580 5.580 11 Si 0.778 3.222 12 H -0.183 1.183 13 H -0.233 1.233 14 H -0.218 1.218 15 C 0.045 3.955 16 C 0.034 3.966 17 H 0.079 0.921 18 N -0.332 5.332 19 C 0.363 3.637 20 O -0.460 6.460 21 C -0.282 4.282 22 C -0.101 4.101 23 N -0.107 5.107 24 N -0.111 5.111 25 C -0.067 4.067 26 C -0.089 4.089 27 C 0.286 3.714 28 F -0.173 7.173 29 F -0.183 7.183 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.013 0.987 40 H 0.241 0.759 41 H 0.235 0.765 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -18.386 -10.836 -0.700 21.353 hybrid contribution 1.580 0.345 -0.476 1.686 sum -16.806 -10.490 -1.177 19.846 Atomic orbital electron populations 1.21753 0.93064 1.02182 1.02144 1.21269 0.96855 0.99082 0.93387 0.90641 1.21959 0.95478 1.00561 0.97403 1.21158 0.93806 0.95875 0.88107 1.44176 1.48024 1.39388 1.00658 1.19443 1.09043 1.03407 1.05456 0.91145 1.25657 0.98925 0.99570 1.00449 1.70174 1.38745 1.30725 1.18369 0.85472 0.78073 0.81470 0.77183 1.18349 1.23345 1.21814 1.20866 0.90199 0.94824 0.89652 1.21442 0.95045 0.81530 0.98592 0.92087 1.45390 1.66387 1.13428 1.07991 1.17551 0.76982 0.85010 0.84167 1.90778 1.52668 1.70510 1.32000 1.20340 1.17237 0.96686 0.93890 1.24409 0.95632 0.89867 1.00184 1.77163 1.24282 1.20503 0.88711 1.48659 1.47416 1.09653 1.05394 1.22701 1.04863 0.84705 0.94467 1.22049 1.01366 0.88668 0.96840 1.20140 0.72992 0.88296 0.89972 1.93036 1.71908 1.59909 1.92491 1.93078 1.36022 1.93453 1.95741 0.92431 0.90470 0.93415 0.88976 0.91734 0.92359 0.96985 0.94778 0.93457 0.98721 0.75882 0.76476 0.87011 0.86503 0.86840 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.05 71.98 0.65 -2.41 16 2 C -0.09 -2.58 2.48 -10.77 -0.03 -2.61 16 3 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.12 -3.24 5.20 30.67 0.16 -3.08 16 5 C 0.14 5.21 6.52 86.36 0.56 5.78 16 6 N -0.60 -29.56 2.91 -699.07 -2.04 -31.60 16 7 C -0.24 -13.40 9.58 84.03 0.81 -12.59 16 8 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 9 C -0.05 -2.99 4.91 84.86 0.42 -2.57 16 10 N -0.93 -59.29 11.19 21.65 0.24 -59.05 16 11 Si 0.95 47.87 29.59 68.60 2.03 49.90 16 12 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 14 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 15 C 0.17 8.77 4.91 86.37 0.42 9.20 16 16 C 0.14 5.54 2.24 45.07 0.10 5.64 16 17 H 0.06 2.60 7.58 -2.39 -0.02 2.58 16 18 N -0.68 -24.96 4.24 -445.42 -1.89 -26.85 16 19 C 0.58 23.62 7.78 86.67 0.67 24.29 16 20 O -0.58 -28.44 13.67 -4.04 -0.06 -28.49 16 21 C -0.27 -9.00 6.13 -20.15 -0.12 -9.12 16 22 C 0.08 2.30 11.50 85.65 0.99 3.29 16 23 N -0.29 -7.37 12.50 -56.27 -0.70 -8.07 16 24 N -0.33 -7.37 3.98 -354.29 -1.41 -8.78 16 25 C 0.07 0.66 11.10 127.77 1.42 2.08 16 26 C 0.05 1.32 6.44 42.14 0.27 1.59 16 27 C 0.34 9.25 4.95 71.24 0.35 9.60 16 28 F -0.19 -6.19 16.24 44.97 0.73 -5.46 16 29 F -0.20 -7.60 16.22 44.97 0.73 -6.87 16 30 H 0.06 1.26 7.54 -2.39 -0.02 1.24 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.72 6.40 -2.39 -0.02 1.70 16 35 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.05 2.92 6.03 -2.39 -0.01 2.91 16 39 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.40 12.47 5.59 -92.71 -0.52 11.95 16 41 H 0.22 4.47 7.50 -2.91 -0.02 4.45 16 42 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.12 0.49 7.04 -2.39 -0.02 0.47 16 44 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.18 2.31 6.73 -2.39 -0.02 2.29 16 Total: -1.00 -85.52 368.34 4.82 -80.70 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.51 Total: 15.51 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: 6.67 Total: 29.07 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -5.80 Total: -134.35 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.06 Total: -28.49 kcal Atomic # 9 Polarization: -13.80 SS G_CDS: 1.46 Total: -12.34 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -85.52 4.82 -80.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968529607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.642 kcal (2) G-P(sol) polarization free energy of solvation -85.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds