Wall clock time and date at job start Wed Apr 1 2020 00:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.85859 * 2 1 4 4 C 1.51650 * 110.93661 * 123.72647 * 2 1 3 5 5 C 1.37733 * 132.17058 * 282.29757 * 4 2 1 6 6 C 1.38356 * 119.97427 * 181.17173 * 5 4 2 7 7 C 1.38293 * 119.76624 * 359.52424 * 6 5 4 8 8 C 1.37924 * 120.34847 * 0.29125 * 7 6 5 9 9 C 1.38884 * 107.03451 * 102.82779 * 4 2 1 10 10 O 1.36134 * 111.23708 * 358.84975 * 9 4 2 11 11 C 1.43771 * 109.22862 * 19.09207 * 10 9 4 12 12 H 1.09006 * 110.75125 * 90.73252 * 11 10 9 13 13 C 1.50703 * 110.74704 * 213.89938 * 11 10 9 14 14 O 1.21280 * 120.00269 * 3.54519 * 13 11 10 15 15 N 1.34779 * 119.99897 * 183.55191 * 13 11 10 16 16 C 1.46500 * 119.99999 * 179.97438 * 15 13 11 17 17 C 1.50702 * 109.46764 * 179.97438 * 16 15 13 18 18 C 1.29455 * 117.69152 * 94.74822 * 17 16 15 19 19 C 1.50318 * 123.65540 * 180.58760 * 18 17 16 20 20 N 1.47001 * 109.19990 * 349.49211 * 19 18 17 21 21 C 1.36937 * 121.37633 * 222.76553 * 20 19 18 22 22 H 1.07995 * 120.00559 * 155.95864 * 21 20 19 23 23 C 1.38813 * 119.99897 * 335.95699 * 21 20 19 24 24 N 1.31625 * 120.00212 * 344.52785 * 23 21 20 25 25 Si 1.86799 * 120.00203 * 164.52466 * 23 21 20 26 26 H 1.48502 * 109.47109 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47083 * 120.00291 * 25 23 21 28 28 H 1.48506 * 109.47229 * 240.00407 * 25 23 21 29 29 C 1.47336 * 117.25302 * 42.74314 * 20 19 18 30 30 C 1.49963 * 117.69894 * 274.99797 * 17 16 15 31 31 H 1.08992 * 109.47493 * 297.72475 * 1 2 3 32 32 H 1.09002 * 109.46840 * 57.72814 * 1 2 3 33 33 H 1.09005 * 109.46874 * 177.72075 * 1 2 3 34 34 H 1.07998 * 120.01490 * 0.90392 * 5 4 2 35 35 H 1.08001 * 120.11889 * 179.72201 * 6 5 4 36 36 H 1.07999 * 119.82266 * 180.02562 * 7 6 5 37 37 H 1.08005 * 119.87910 * 179.77781 * 8 7 6 38 38 H 0.97003 * 119.99888 * 359.97438 * 15 13 11 39 39 H 1.08993 * 109.47461 * 299.99851 * 16 15 13 40 40 H 1.09005 * 109.46970 * 59.99796 * 16 15 13 41 41 H 1.07996 * 118.17355 * 0.84989 * 18 17 16 42 42 H 1.08998 * 109.66948 * 229.47068 * 19 18 17 43 43 H 1.08994 * 109.38860 * 109.33991 * 19 18 17 44 44 H 0.96996 * 120.00425 * 179.97438 * 24 23 21 45 45 H 1.09000 * 109.78203 * 178.62077 * 29 20 19 46 46 H 1.08999 * 109.82314 * 57.83397 * 29 20 19 47 47 H 1.08997 * 109.31790 * 281.30050 * 30 17 16 48 48 H 1.09009 * 109.31434 * 40.71995 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0719 -0.7864 1.1780 5 6 2.1992 -0.4795 2.5147 6 6 2.7629 -1.3967 3.3838 7 6 3.1875 -2.6234 2.9069 8 6 3.0574 -2.9341 1.5695 9 6 2.4926 -2.0158 0.6875 10 8 2.2624 -2.1179 -0.6503 11 6 2.0829 -0.8023 -1.2017 12 1 3.0347 -0.3916 -1.5387 13 6 1.0852 -0.8282 -2.3308 14 8 0.5127 -1.8601 -2.6106 15 7 0.8292 0.2954 -3.0298 16 6 -0.1404 0.2700 -4.1278 17 6 -0.2420 1.6434 -4.7399 18 6 0.4892 1.8949 -5.7782 19 6 0.5030 3.2210 -6.4859 20 7 -0.5977 4.0519 -5.9772 21 6 -1.3797 4.7941 -6.8215 22 1 -2.3790 5.0758 -6.5242 23 6 -0.8880 5.1844 -8.0595 24 7 0.4031 5.1159 -8.3063 25 14 -2.0586 5.8069 -9.3755 26 1 -3.4481 5.7861 -8.8520 27 1 -1.6903 7.1963 -9.7484 28 1 -1.9680 4.9325 -10.5724 29 6 -0.8252 4.0530 -4.5215 30 6 -1.1786 2.6242 -4.0999 31 1 -0.3634 0.4780 0.9096 32 1 -0.3633 0.5487 -0.8689 33 1 -0.3633 -1.0269 -0.0409 34 1 1.8632 0.4783 2.8834 35 1 2.8680 -1.1567 4.4316 36 1 3.6272 -3.3401 3.5846 37 1 3.3948 -3.8930 1.2046 38 1 1.2869 1.1208 -2.8058 39 1 0.1868 -0.4423 -4.8851 40 1 -1.1158 -0.0296 -3.7444 41 1 1.1215 1.1068 -6.1596 42 1 0.3775 3.0662 -7.5575 43 1 1.4533 3.7210 -6.2990 44 1 0.7466 5.3883 -9.1715 45 1 -1.6488 4.7239 -4.2774 46 1 0.0792 4.3765 -4.0063 47 1 -2.2002 2.4000 -4.4067 48 1 -1.1040 2.5393 -3.0157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001498024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:48 Heat of formation + Delta-G solvation = 2.651957 kcal Electronic energy + Delta-G solvation = -29288.704380 eV Core-core repulsion = 25310.021466 eV Total energy + Delta-G solvation = -3978.682915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.87631 -39.56778 -37.94331 -37.43393 -35.08402 -34.36110 -32.90804 -31.06820 -30.57829 -30.17697 -29.74828 -27.90410 -26.64756 -24.53505 -23.60738 -22.81071 -22.53254 -21.42067 -21.16666 -20.47392 -17.94677 -17.60395 -17.53329 -17.30182 -16.52730 -15.81147 -15.78434 -15.36071 -14.99895 -14.86211 -14.43756 -14.07376 -13.97341 -13.89155 -13.61127 -13.50317 -13.34903 -13.25923 -13.09909 -12.83033 -12.45249 -12.31632 -12.11071 -11.90435 -11.68650 -11.61319 -11.42640 -11.29870 -10.97963 -10.96387 -10.79619 -10.46866 -10.33896 -9.97685 -9.88503 -9.65857 -9.25334 -9.09949 -8.74567 -8.48132 -8.13558 -6.80929 -5.85445 -3.24443 0.93567 1.04441 2.24325 2.41445 2.85031 3.31710 3.34307 3.42391 3.44209 3.53359 3.90749 4.14146 4.44682 4.46976 4.49871 4.65776 4.72798 4.82431 5.02610 5.04198 5.08300 5.17177 5.22684 5.27926 5.33611 5.42331 5.51164 5.56068 5.68798 5.73758 5.85272 5.92060 5.97463 5.99342 6.07548 6.09017 6.13613 6.23376 6.25909 6.33100 6.44580 6.66090 6.79583 6.83959 7.09221 7.18316 7.24353 7.41168 7.66932 7.76305 8.06129 8.32162 9.13719 9.76343 10.33807 11.25041 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.002002 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.074695 B =13979.651627 C =14316.733221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.066 4.066 3 H 0.107 0.893 4 C -0.168 4.168 5 C -0.065 4.065 6 C -0.151 4.151 7 C -0.084 4.084 8 C -0.138 4.138 9 C 0.109 3.891 10 O -0.273 6.273 11 C 0.063 3.937 12 H 0.113 0.887 13 C 0.521 3.479 14 O -0.521 6.521 15 N -0.715 5.715 16 C 0.159 3.841 17 C -0.168 4.168 18 C -0.121 4.121 19 C 0.193 3.807 20 N -0.595 5.595 21 C -0.246 4.246 22 H 0.069 0.931 23 C -0.002 4.002 24 N -0.909 5.909 25 Si 0.905 3.095 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.289 1.289 29 C 0.144 3.856 30 C -0.090 4.090 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.403 0.597 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.042 0.958 44 H 0.254 0.746 45 H 0.057 0.943 46 H 0.023 0.977 47 H 0.064 0.936 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.179 -11.370 21.811 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 H 0.125 0.875 4 C -0.169 4.169 5 C -0.083 4.083 6 C -0.169 4.169 7 C -0.102 4.102 8 C -0.156 4.156 9 C 0.063 3.937 10 O -0.186 6.186 11 C 0.003 3.997 12 H 0.130 0.870 13 C 0.305 3.695 14 O -0.396 6.396 15 N -0.368 5.368 16 C 0.037 3.963 17 C -0.168 4.168 18 C -0.142 4.142 19 C 0.068 3.932 20 N -0.318 5.318 21 C -0.375 4.375 22 H 0.087 0.913 23 C -0.199 4.199 24 N -0.555 5.555 25 Si 0.735 3.265 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.216 1.216 29 C 0.017 3.983 30 C -0.129 4.129 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.237 0.763 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.041 0.959 47 H 0.083 0.917 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.788 -12.269 21.269 25.227 hybrid contribution -0.213 0.744 -0.695 1.040 sum 5.575 -11.525 20.574 24.232 Atomic orbital electron populations 1.21885 0.92205 1.03355 1.03187 1.21300 0.97781 0.99703 0.89730 0.87501 1.20695 1.04284 0.96573 0.95377 1.20312 0.97481 0.99611 0.90925 1.21047 1.01903 0.94187 0.99775 1.20889 0.98382 0.96858 0.94093 1.20278 1.03062 0.99965 0.92342 1.19641 0.95088 0.94998 0.83963 1.86946 1.86124 1.27406 1.18103 1.23323 0.99489 0.82800 0.94047 0.86992 1.19841 0.82868 0.84267 0.82526 1.90749 1.50266 1.31046 1.67556 1.46094 1.44529 1.11512 1.34635 1.20499 0.91857 0.96069 0.87866 1.20468 1.02239 0.94645 0.99489 1.23315 0.95466 1.00148 0.95293 1.19770 0.90789 0.84475 0.98160 1.44126 1.36647 1.50866 1.00174 1.19220 0.94493 1.26866 0.96935 0.91280 1.24998 0.95572 0.99692 0.99683 1.70011 1.10719 1.51987 1.22759 0.86180 0.80385 0.78054 0.81916 1.20284 1.21729 1.21566 1.20947 0.98182 0.92931 0.86204 1.20755 0.98019 0.96544 0.97561 0.91276 0.90952 0.91752 0.85632 0.85413 0.85100 0.85315 0.76265 0.91431 0.91372 0.88711 0.88793 0.94063 0.93613 0.92432 0.95939 0.91719 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.26 37.16 0.31 -1.14 16 2 C -0.07 -0.60 3.63 -90.41 -0.33 -0.93 16 3 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.17 -1.65 5.63 -104.10 -0.59 -2.24 16 5 C -0.07 -0.52 10.03 -39.72 -0.40 -0.92 16 6 C -0.15 -1.08 10.07 -39.52 -0.40 -1.48 16 7 C -0.08 -0.63 10.02 -39.68 -0.40 -1.02 16 8 C -0.14 -1.31 10.06 -39.31 -0.40 -1.70 16 9 C 0.11 1.24 7.04 -38.95 -0.27 0.97 16 10 O -0.27 -3.68 10.39 -39.20 -0.41 -4.09 16 11 C 0.06 0.69 3.96 -26.98 -0.11 0.59 16 12 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 13 C 0.52 6.92 5.43 -10.98 -0.06 6.86 16 14 O -0.52 -9.18 16.58 -13.48 -0.22 -9.41 16 15 N -0.71 -8.45 4.89 -61.47 -0.30 -8.75 16 16 C 0.16 2.22 5.66 -5.19 -0.03 2.19 16 17 C -0.17 -2.67 5.23 -100.99 -0.53 -3.20 16 18 C -0.12 -2.18 9.47 -35.78 -0.34 -2.52 16 19 C 0.19 4.37 5.23 -5.11 -0.03 4.35 16 20 N -0.59 -14.27 3.01 -173.69 -0.52 -14.79 16 21 C -0.25 -6.55 9.71 -15.06 -0.15 -6.69 16 22 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 23 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 24 N -0.91 -25.59 11.08 55.49 0.61 -24.98 16 25 Si 0.90 21.34 29.58 -169.99 -5.03 16.31 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.14 2.80 6.58 -3.53 -0.02 2.77 16 30 C -0.09 -1.45 5.94 -28.19 -0.17 -1.61 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.71 6.87 -51.93 -0.36 0.36 16 33 H 0.06 0.77 8.08 -51.93 -0.42 0.36 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.40 3.95 8.46 -40.82 -0.35 3.60 16 39 H 0.07 1.00 7.79 -51.93 -0.40 0.59 16 40 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 41 H 0.09 1.53 7.74 -52.49 -0.41 1.12 16 42 H 0.09 2.40 6.41 -51.93 -0.33 2.07 16 43 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -32.21 390.62 -11.26 -43.47 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.30 Total: 2.21 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.98 Total: -5.86 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.21 Total: -48.52 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.63 Total: -13.49 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.21 -11.26 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001498024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.122 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds