Wall clock time and date at job start Wed Apr 1 2020 00:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.81729 * 2 1 4 4 C 1.54704 * 110.75830 * 236.66138 * 2 1 3 5 5 C 1.51680 * 101.90499 * 216.47036 * 4 2 1 6 6 C 1.37698 * 132.13044 * 195.48092 * 5 4 2 7 7 C 1.38599 * 120.32121 * 179.43035 * 6 5 4 8 8 C 1.37830 * 119.97496 * 359.94113 * 7 6 5 9 9 C 1.39495 * 120.18217 * 0.22105 * 8 7 6 10 10 C 1.47544 * 120.05132 * 180.02562 * 9 8 7 11 11 O 1.21578 * 120.00006 * 134.05930 * 10 9 8 12 12 N 1.34778 * 119.99684 * 314.05446 * 10 9 8 13 13 C 1.47162 * 120.70484 * 174.74629 * 12 10 9 14 14 C 1.53885 * 108.03061 * 132.78208 * 13 12 10 15 15 H 1.09006 * 112.09838 * 182.54034 * 14 13 12 16 16 C 1.54543 * 107.83336 * 306.49929 * 14 13 12 17 17 C 1.54282 * 104.94380 * 89.01300 * 16 14 13 18 18 C 1.54795 * 104.72759 * 0.08863 * 17 16 14 19 19 H 1.09001 * 112.68948 * 146.64012 * 18 17 16 20 20 C 1.47163 * 120.71290 * 354.76916 * 12 10 9 21 21 N 1.48300 * 104.40234 * 24.62098 * 18 17 16 22 22 C 1.36937 * 128.08042 * 139.09891 * 21 18 17 23 23 H 1.08001 * 119.99807 * 344.58285 * 22 21 18 24 24 C 1.38813 * 120.00596 * 164.57430 * 22 21 18 25 25 N 1.31620 * 119.99449 * 350.43457 * 24 22 21 26 26 Si 1.86796 * 120.00382 * 170.42838 * 24 22 21 27 27 H 1.48501 * 109.47043 * 60.00332 * 26 24 22 28 28 H 1.48496 * 109.47303 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46921 * 300.00573 * 26 24 22 30 30 C 1.38845 * 106.99657 * 15.52339 * 5 4 2 31 31 O 1.35851 * 111.31261 * 0.78292 * 30 5 4 32 32 H 1.08997 * 109.47000 * 183.33361 * 1 2 3 33 33 H 1.08998 * 109.47411 * 303.33582 * 1 2 3 34 34 H 1.09003 * 109.46425 * 63.33820 * 1 2 3 35 35 H 1.08998 * 110.94768 * 98.31602 * 4 2 1 36 36 H 1.08999 * 110.94550 * 334.62048 * 4 2 1 37 37 H 1.07997 * 119.84129 * 359.41495 * 6 5 4 38 38 H 1.08001 * 120.01502 * 179.97438 * 7 6 5 39 39 H 1.07993 * 119.91184 * 180.19898 * 8 7 6 40 40 H 1.08998 * 109.75398 * 13.14692 * 13 12 10 41 41 H 1.09005 * 109.74983 * 252.41690 * 13 12 10 42 42 H 1.08992 * 110.36912 * 207.91122 * 16 14 13 43 43 H 1.09009 * 110.36262 * 330.11861 * 16 14 13 44 44 H 1.08993 * 110.36217 * 118.90525 * 17 16 14 45 45 H 1.09006 * 110.36462 * 241.21683 * 17 16 14 46 46 H 1.09003 * 109.74745 * 346.85698 * 20 12 10 47 47 H 1.09006 * 109.74660 * 107.58798 * 20 12 10 48 48 H 0.97003 * 119.99731 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0188 0.0000 4 6 2.0783 -0.7950 -1.2086 5 6 3.3052 -1.4604 -0.6147 6 6 4.3926 -2.0767 -1.1926 7 6 5.4012 -2.6028 -0.4008 8 6 5.3190 -2.5089 0.9718 9 6 4.2203 -1.8896 1.5678 10 6 4.1354 -1.7903 3.0375 11 8 3.8200 -0.7380 3.5584 12 7 4.4075 -2.8661 3.8024 13 6 4.4401 -2.7561 5.2695 14 6 3.6240 -3.9229 5.8530 15 1 3.5673 -3.8802 6.9407 16 6 2.2260 -3.8985 5.1946 17 6 2.3693 -4.7623 3.9243 18 6 3.8440 -5.2328 3.9327 19 1 3.9701 -6.2285 3.5076 20 6 4.6787 -4.1757 3.1883 21 7 4.2403 -5.1789 5.3608 22 6 4.9981 -6.0788 6.0615 23 1 5.1759 -7.0648 5.6582 24 6 5.5378 -5.7239 7.2902 25 7 5.4836 -4.4730 7.6961 26 14 6.3407 -7.0215 8.3676 27 1 7.4804 -7.6340 7.6388 28 1 6.8340 -6.3906 9.6181 29 1 5.3456 -8.0716 8.7027 30 6 3.1908 -1.3647 0.7657 31 8 2.0394 -0.7387 1.1234 32 1 -0.3633 -1.0259 0.0598 33 1 -0.3634 0.5647 0.8585 34 1 -0.3632 0.4612 -0.9185 35 1 2.3541 -0.1251 -2.0230 36 1 1.3564 -1.5389 -1.5455 37 1 4.4597 -2.1509 -2.2679 38 1 6.2517 -3.0855 -0.8592 39 1 6.1070 -2.9163 1.5877 40 1 3.9995 -1.8080 5.5778 41 1 5.4704 -2.8154 5.6205 42 1 1.4833 -4.3304 5.8651 43 1 1.9492 -2.8779 4.9299 44 1 1.6970 -5.6189 3.9704 45 1 2.1649 -4.1660 3.0350 46 1 4.3940 -4.1553 2.1364 47 1 5.7388 -4.4126 3.2792 48 1 5.8604 -4.2250 8.5549 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029395877.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:23 Heat of formation + Delta-G solvation = 4.886187 kcal Electronic energy + Delta-G solvation = -31432.487303 eV Core-core repulsion = 27453.901272 eV Total energy + Delta-G solvation = -3978.586031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.36418 -39.87616 -37.89965 -37.13705 -33.75509 -33.24827 -32.34545 -31.37384 -30.65787 -30.01706 -29.19776 -26.78520 -26.24578 -24.13639 -23.80638 -22.70062 -22.08036 -21.77439 -19.82096 -19.57986 -18.65499 -17.60140 -17.21418 -16.74558 -16.17012 -15.63949 -15.27549 -15.15959 -14.95864 -14.61813 -13.99775 -13.70489 -13.56149 -13.36994 -13.24434 -13.11049 -12.97854 -12.89146 -12.65178 -12.49499 -12.22129 -11.93629 -11.78980 -11.59930 -11.56490 -11.46352 -11.15777 -11.01704 -10.87018 -10.83165 -10.75631 -10.29847 -10.02331 -9.81570 -9.65232 -9.48728 -9.28586 -8.83188 -8.74420 -8.21823 -7.96628 -6.80763 -5.82150 -3.17575 0.99244 1.25412 3.02936 3.22494 3.36979 3.42546 3.43363 3.55444 3.82896 4.20651 4.30189 4.43093 4.66304 4.75155 4.91480 4.95854 5.03967 5.17749 5.21081 5.30017 5.31503 5.35470 5.39135 5.57428 5.64032 5.66998 5.75222 5.80739 5.85357 5.85839 5.91141 6.01126 6.16340 6.18718 6.26634 6.33406 6.38871 6.47684 6.53293 6.60149 6.70687 6.76349 6.85297 6.93956 7.04870 7.12459 7.33702 7.53275 7.72629 8.13294 8.16469 8.76889 9.07387 9.69646 10.47260 11.30852 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.003342 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.196673 B = 8376.235179 C = 8867.187460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 H 0.087 0.913 4 C -0.103 4.103 5 C -0.188 4.188 6 C -0.055 4.055 7 C -0.156 4.156 8 C -0.052 4.052 9 C -0.137 4.137 10 C 0.552 3.448 11 O -0.546 6.546 12 N -0.585 5.585 13 C 0.112 3.888 14 C 0.170 3.830 15 H 0.117 0.883 16 C -0.136 4.136 17 C -0.122 4.122 18 C 0.134 3.866 19 H 0.078 0.922 20 C 0.092 3.908 21 N -0.584 5.584 22 C -0.228 4.228 23 H 0.076 0.924 24 C -0.002 4.002 25 N -0.912 5.912 26 Si 0.912 3.088 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.157 3.843 31 O -0.285 6.285 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 5.484 -19.479 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.017 3.983 3 H 0.105 0.895 4 C -0.140 4.140 5 C -0.189 4.189 6 C -0.074 4.074 7 C -0.174 4.174 8 C -0.071 4.071 9 C -0.141 4.141 10 C 0.339 3.661 11 O -0.425 6.425 12 N -0.316 5.316 13 C -0.011 4.011 14 C 0.063 3.937 15 H 0.135 0.865 16 C -0.176 4.176 17 C -0.161 4.161 18 C 0.026 3.974 19 H 0.096 0.904 20 C -0.033 4.033 21 N -0.305 5.305 22 C -0.356 4.356 23 H 0.093 0.907 24 C -0.199 4.199 25 N -0.558 5.558 26 Si 0.742 3.258 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.110 3.890 31 O -0.198 6.198 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.836 5.988 -18.696 20.480 hybrid contribution 0.593 -0.636 0.338 0.933 sum -5.243 5.352 -18.358 19.828 Atomic orbital electron populations 1.21871 0.92011 1.03627 1.03086 1.23442 0.95918 0.95626 0.83284 0.89469 1.21861 0.94573 0.99188 0.98362 1.20735 0.98382 1.06380 0.93398 1.20376 0.91850 0.95295 0.99850 1.20935 0.99994 1.03332 0.93142 1.21187 0.96043 0.94667 0.95202 1.19317 0.94695 1.06290 0.93823 1.18081 0.78041 0.84113 0.85831 1.90740 1.48618 1.28915 1.74242 1.48138 1.67284 1.08134 1.08070 1.22468 1.02758 0.99774 0.76110 1.21839 0.87274 0.84905 0.99716 0.86548 1.22633 0.99736 0.98428 0.96768 1.22490 0.97377 0.98621 0.97611 1.21994 0.92194 0.95609 0.87633 0.90396 1.22695 1.00536 0.83945 0.96172 1.45153 1.58344 1.23717 1.03273 1.18942 1.23877 0.92400 1.00399 0.90667 1.24839 0.99792 0.96175 0.99134 1.69843 1.49499 1.15005 1.21440 0.86213 0.79041 0.80591 0.79931 1.21136 1.21627 1.21205 1.19368 0.86012 0.91785 0.91868 1.86928 1.34104 1.61401 1.37327 0.91332 0.91119 0.90372 0.89123 0.89065 0.85670 0.84959 0.84412 0.91261 0.90119 0.92917 0.92763 0.92756 0.93072 0.91273 0.91666 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.59 37.16 0.36 -0.87 16 2 C 0.07 0.79 4.26 -25.83 -0.11 0.68 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.10 -0.93 6.65 -26.50 -0.18 -1.10 16 5 C -0.19 -2.27 6.27 -104.11 -0.65 -2.92 16 6 C -0.06 -0.57 10.02 -39.65 -0.40 -0.97 16 7 C -0.16 -1.68 10.05 -39.60 -0.40 -2.08 16 8 C -0.05 -0.71 7.56 -39.26 -0.30 -1.01 16 9 C -0.14 -2.31 4.90 -104.72 -0.51 -2.82 16 10 C 0.55 11.27 7.22 -12.47 -0.09 11.18 16 11 O -0.55 -12.96 16.40 5.30 0.09 -12.87 16 12 N -0.58 -11.86 2.25 -172.75 -0.39 -12.25 16 13 C 0.11 2.56 5.83 -3.22 -0.02 2.54 16 14 C 0.17 3.98 3.11 -65.66 -0.20 3.78 16 15 H 0.12 3.06 6.42 -51.93 -0.33 2.73 16 16 C -0.14 -2.81 6.18 -25.25 -0.16 -2.97 16 17 C -0.12 -2.29 6.20 -25.11 -0.16 -2.44 16 18 C 0.13 2.66 4.32 -65.53 -0.28 2.38 16 19 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 20 C 0.09 1.67 4.44 -3.22 -0.01 1.65 16 21 N -0.58 -14.01 2.81 -152.45 -0.43 -14.44 16 22 C -0.23 -5.97 10.37 -15.06 -0.16 -6.13 16 23 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 24 C 0.00 -0.05 5.42 -17.43 -0.09 -0.15 16 25 N -0.91 -25.21 10.41 55.49 0.58 -24.64 16 26 Si 0.91 21.25 29.56 -169.99 -5.03 16.23 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 30 C 0.16 2.47 6.73 -38.44 -0.26 2.21 16 31 O -0.28 -4.58 10.69 -19.27 -0.21 -4.79 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.72 7.92 -51.93 -0.41 0.30 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.14 1.81 7.03 -52.49 -0.37 1.44 16 40 H 0.07 1.62 7.08 -51.93 -0.37 1.25 16 41 H 0.08 2.05 7.79 -51.93 -0.40 1.65 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.13 7.84 -51.92 -0.41 0.73 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.05 0.93 7.84 -51.93 -0.41 0.52 16 46 H 0.07 1.09 5.42 -51.93 -0.28 0.81 16 47 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 48 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -31.87 375.34 -10.52 -42.39 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.17 Total: 3.76 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -3.62 Total: 0.95 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.24 Total: -51.32 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.12 Total: -17.66 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.87 -10.52 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029395877.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.273 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds