Wall clock time and date at job start Wed Apr 1 2020 01:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.49507 * 2 1 4 4 C 1.53619 * 109.43214 * 120.22704 * 2 1 3 5 5 N 1.46927 * 108.54287 * 174.72547 * 4 2 1 6 6 C 1.34782 * 120.63333 * 126.36255 * 5 4 2 7 7 O 1.21280 * 119.99778 * 359.72373 * 6 5 4 8 8 C 1.50698 * 119.99866 * 179.72002 * 6 5 4 9 9 N 1.46500 * 109.46943 * 180.02562 * 8 6 5 10 10 C 1.34947 * 126.04040 * 124.99754 * 9 8 6 11 11 C 1.35320 * 107.74889 * 180.02562 * 10 9 8 12 12 C 1.39870 * 107.91564 * 0.02562 * 11 10 9 13 13 C 1.50706 * 125.89274 * 180.02562 * 12 11 10 14 14 F 1.39897 * 109.47068 * 299.99882 * 13 12 11 15 15 F 1.39895 * 109.47042 * 60.00191 * 13 12 11 16 16 N 1.30832 * 108.20560 * 0.26231 * 12 11 10 17 17 C 1.46929 * 118.73849 * 306.09129 * 5 4 2 18 18 C 1.53189 * 108.77565 * 53.85848 * 17 5 4 19 19 C 1.53045 * 109.31338 * 305.36722 * 18 17 5 20 20 H 1.08998 * 109.45877 * 181.36972 * 19 18 17 21 21 N 1.46503 * 109.45992 * 301.34459 * 19 18 17 22 22 C 1.36938 * 119.99825 * 274.99803 * 21 19 18 23 23 H 1.07996 * 119.99801 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99695 * 179.97438 * 22 21 19 25 25 N 1.31626 * 120.00205 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00017 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.46890 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.47211 * 120.00078 * 26 24 22 29 29 H 1.48498 * 109.47290 * 240.00330 * 26 24 22 30 30 H 1.09004 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46869 * 300.06144 * 1 2 3 32 32 H 1.08989 * 109.47562 * 60.06758 * 1 2 3 33 33 H 1.08994 * 109.74573 * 54.98336 * 4 2 1 34 34 H 1.08999 * 109.66403 * 294.41151 * 4 2 1 35 35 H 1.08994 * 109.47005 * 60.00371 * 8 6 5 36 36 H 1.09004 * 109.47101 * 299.99702 * 8 6 5 37 37 H 1.07995 * 126.12433 * 0.03676 * 10 9 8 38 38 H 1.07992 * 126.04092 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.46953 * 179.97438 * 13 12 11 40 40 H 1.08993 * 109.58656 * 173.64757 * 17 5 4 41 41 H 1.09004 * 109.58189 * 294.07240 * 17 5 4 42 42 H 1.08998 * 109.49855 * 65.31625 * 18 17 5 43 43 H 1.08997 * 109.50073 * 185.41491 * 18 17 5 44 44 H 0.96999 * 119.99891 * 94.99903 * 21 19 18 45 45 H 0.96999 * 119.99805 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7293 1.2517 5 7 3.5046 -0.8295 1.1692 6 6 4.2812 -0.3870 2.1781 7 8 3.7733 0.1041 3.1638 8 6 5.7806 -0.5025 2.0811 9 7 6.3920 0.0442 3.2950 10 6 7.2540 -0.6000 4.1093 11 6 7.5832 0.2454 5.1133 12 6 6.8984 1.4472 4.9058 13 6 6.9716 2.6690 5.7851 14 9 6.5396 2.3420 7.0748 15 9 8.2924 3.1271 5.8378 16 7 6.1795 1.3257 3.8195 17 6 4.1053 -1.4267 -0.0313 18 6 3.5708 -0.6947 -1.2663 19 6 2.0408 -0.7228 -1.2486 20 1 1.6581 -0.2237 -2.1389 21 7 1.5783 -2.1128 -1.2314 22 6 1.4467 -2.8052 -2.4055 23 1 1.6843 -2.3266 -3.3441 24 6 1.0091 -4.1223 -2.3892 25 7 0.7200 -4.7057 -1.2452 26 14 0.8302 -5.0671 -3.9907 27 1 1.2159 -4.1923 -5.1272 28 1 1.7140 -6.2601 -3.9630 29 1 -0.5807 -5.5000 -4.1552 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3634 0.5127 -0.8905 33 1 1.6085 -1.7286 1.2980 34 1 1.7631 -0.1669 2.1431 35 1 6.1327 0.0556 1.2136 36 1 6.0582 -1.5513 1.9757 37 1 7.6164 -1.6094 3.9822 38 1 8.2557 0.0301 5.9304 39 1 6.3324 3.4508 5.3747 40 1 5.1896 -1.3246 0.0132 41 1 3.8376 -2.4818 -0.0875 42 1 3.9158 0.3392 -1.2541 43 1 3.9334 -1.1891 -2.1675 44 1 1.3653 -2.5427 -0.3884 45 1 0.4138 -5.6260 -1.2339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036068921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:10 Heat of formation + Delta-G solvation = -35.644750 kcal Electronic energy + Delta-G solvation = -30165.400217 eV Core-core repulsion = 25663.119854 eV Total energy + Delta-G solvation = -4502.280363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.19103 -47.20245 -41.57186 -40.06361 -37.81863 -34.46679 -33.93132 -32.87135 -31.51660 -30.65258 -29.32443 -29.05021 -26.77372 -25.65676 -24.62221 -23.57440 -21.80857 -21.64123 -20.90153 -19.73706 -18.39067 -17.84449 -17.47212 -17.43332 -17.36829 -17.03941 -16.44523 -15.82598 -15.29245 -14.82911 -14.66201 -14.31480 -14.09096 -14.06859 -13.95413 -13.66628 -13.57226 -13.48209 -13.37726 -13.11948 -13.02514 -12.62844 -12.42973 -12.30208 -11.65255 -11.57314 -11.47574 -11.29765 -10.99861 -10.96613 -10.89888 -10.59601 -10.58756 -10.23562 -10.15143 -9.93937 -9.64988 -9.54990 -9.03320 -8.90581 -8.39328 -7.07473 -5.88092 -3.16972 1.48781 1.93141 2.31232 2.53983 3.00411 3.34652 3.41250 3.43267 3.47432 3.92714 4.20297 4.31003 4.48516 4.49457 4.63713 4.74299 4.82835 5.01497 5.18836 5.19145 5.27251 5.37876 5.39962 5.46614 5.60991 5.62251 5.68963 5.81403 5.94726 5.97586 6.09315 6.13275 6.20791 6.28349 6.41264 6.47187 6.57490 6.61408 6.65899 6.81435 6.90250 7.26729 7.48105 7.60842 8.14279 8.30317 9.42226 9.98051 10.33031 11.34214 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.002283 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.627699 B =12260.924038 C =12743.444989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.121 3.879 5 N -0.598 5.598 6 C 0.499 3.501 7 O -0.524 6.524 8 C 0.113 3.887 9 N -0.345 5.345 10 C 0.059 3.941 11 C -0.240 4.240 12 C -0.016 4.016 13 C 0.360 3.640 14 F -0.191 7.191 15 F -0.193 7.193 16 N -0.225 5.225 17 C 0.110 3.890 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.719 5.719 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.182 0.818 38 H 0.153 0.847 39 H 0.127 0.873 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.427 10.632 8.783 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.001 4.001 5 N -0.331 5.331 6 C 0.284 3.716 7 O -0.400 6.400 8 C -0.012 4.012 9 N -0.128 5.128 10 C -0.086 4.086 11 C -0.269 4.269 12 C -0.183 4.183 13 C 0.305 3.695 14 F -0.172 7.172 15 F -0.174 7.174 16 N -0.049 5.049 17 C -0.012 4.012 18 C -0.192 4.192 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.199 0.801 38 H 0.171 0.829 39 H 0.145 0.855 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.274 11.319 8.242 18.620 hybrid contribution 0.495 -1.453 -0.209 1.549 sum 12.768 9.866 8.033 18.025 Atomic orbital electron populations 1.21668 0.94155 1.03222 1.00526 1.21782 0.96589 0.98818 0.95577 0.91553 1.21768 0.77877 1.01672 0.98760 1.48115 1.07403 1.59747 1.17830 1.20281 0.88393 0.79274 0.83650 1.90762 1.74482 1.43930 1.30817 1.21721 0.92719 1.01450 0.85284 1.48105 1.34124 1.10042 1.20556 1.22606 0.94589 0.99559 0.91833 1.21234 1.08937 0.93396 1.03373 1.22594 1.00556 0.97541 0.97617 1.19189 0.79704 0.92175 0.78469 1.93029 1.89465 1.94109 1.40625 1.93017 1.38501 1.89438 1.96487 1.77349 1.18946 0.98054 1.10521 1.21814 0.95863 0.99517 0.83994 1.22531 1.00701 0.98650 0.97273 1.20215 0.90669 0.87403 0.94939 0.92998 1.42493 1.79003 1.07676 1.06956 1.19256 1.37285 0.93829 0.86567 0.91168 1.24713 1.02186 0.97217 0.96633 1.69657 1.51666 1.13042 1.23645 0.86169 0.77353 0.79939 0.82994 1.20622 1.21972 1.21931 0.91016 0.93731 0.92740 0.90424 0.89755 0.86409 0.85264 0.80053 0.82884 0.85540 0.91558 0.89188 0.93174 0.90520 0.78115 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.05 37.16 0.34 -1.80 16 2 C -0.11 -1.66 2.69 -90.27 -0.24 -1.91 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.93 5.44 -3.49 -0.02 1.91 16 5 N -0.60 -8.59 2.97 -172.51 -0.51 -9.10 16 6 C 0.50 7.22 7.73 -10.98 -0.08 7.14 16 7 O -0.52 -9.68 15.10 5.56 0.08 -9.60 16 8 C 0.11 1.16 5.34 -5.19 -0.03 1.13 16 9 N -0.35 -4.20 3.41 -62.55 -0.21 -4.41 16 10 C 0.06 0.58 11.45 -17.22 -0.20 0.38 16 11 C -0.24 -2.62 10.74 -40.01 -0.43 -3.05 16 12 C -0.02 -0.20 6.65 -82.40 -0.55 -0.75 16 13 C 0.36 3.76 5.79 36.01 0.21 3.97 16 14 F -0.19 -2.22 17.32 2.25 0.04 -2.18 16 15 F -0.19 -2.06 17.32 2.25 0.04 -2.02 16 16 N -0.23 -3.24 11.62 33.67 0.39 -2.84 16 17 C 0.11 1.47 6.08 -3.71 -0.02 1.45 16 18 C -0.15 -2.19 5.78 -26.61 -0.15 -2.35 16 19 C 0.18 3.08 2.53 -67.88 -0.17 2.90 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -15.53 3.64 -53.38 -0.19 -15.73 16 22 C -0.24 -5.92 9.93 -15.06 -0.15 -6.07 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -26.13 13.06 55.49 0.72 -25.41 16 26 Si 0.90 21.06 29.55 -169.99 -5.02 16.03 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 30 H 0.07 1.29 7.54 -51.93 -0.39 0.90 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.81 8.14 -51.94 -0.42 0.39 16 33 H 0.08 1.37 6.63 -51.93 -0.34 1.03 16 34 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 35 H 0.12 0.98 7.69 -51.93 -0.40 0.58 16 36 H 0.13 0.89 7.87 -51.93 -0.41 0.49 16 37 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.63 5.93 -51.93 -0.31 0.32 16 41 H 0.09 1.45 7.74 -51.93 -0.40 1.05 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.38 8.95 5.92 -40.82 -0.24 8.71 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -32.36 375.52 -6.81 -39.17 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.21 Total: 7.85 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.60 Total: 2.57 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.20 Total: -57.49 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.08 Total: -4.20 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.36 -6.81 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036068921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.524 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds