Wall clock time and date at job start Wed Apr 1 2020 01:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49457 * 2 1 4 4 C 1.53195 * 109.52323 * 239.92210 * 2 1 3 5 5 N 1.46923 * 108.77408 * 185.39561 * 4 2 1 6 6 C 1.34782 * 120.63045 * 233.60659 * 5 4 2 7 7 O 1.21568 * 119.99989 * 173.01558 * 6 5 4 8 8 C 1.47709 * 120.00018 * 353.01802 * 6 5 4 9 9 C 1.41502 * 126.51651 * 172.87823 * 8 6 5 10 10 C 1.35364 * 105.50050 * 179.97438 * 9 8 6 11 11 N 1.35031 * 107.22850 * 0.02562 * 10 9 8 12 12 C 1.46504 * 124.88206 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47169 * 125.00201 * 12 11 10 14 14 F 1.39901 * 109.47368 * 175.00107 * 13 12 11 15 15 F 1.39904 * 109.46613 * 294.99604 * 13 12 11 16 16 N 1.28466 * 110.23347 * 359.74685 * 11 10 9 17 17 C 1.46927 * 118.74113 * 53.61059 * 5 4 2 18 18 C 1.53195 * 108.77434 * 306.39021 * 17 5 4 19 19 C 1.53039 * 109.49685 * 120.06852 * 2 1 3 20 20 H 1.08996 * 109.45799 * 301.36838 * 19 2 1 21 21 N 1.46496 * 109.46080 * 61.32891 * 19 2 1 22 22 C 1.36934 * 119.99940 * 205.06462 * 21 19 2 23 23 H 1.08001 * 120.00292 * 0.02562 * 22 21 19 24 24 C 1.38824 * 119.99947 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99696 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99769 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47326 * 60.00031 * 26 24 22 28 28 H 1.48498 * 109.47003 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47209 * 299.99743 * 26 24 22 30 30 H 1.08994 * 109.47444 * 299.93114 * 1 2 3 31 31 H 1.08997 * 109.47398 * 59.93352 * 1 2 3 32 32 H 1.09002 * 109.47512 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.58624 * 305.18507 * 4 2 1 34 34 H 1.08999 * 109.58457 * 65.61114 * 4 2 1 35 35 H 1.08001 * 127.24568 * 359.96194 * 9 8 6 36 36 H 1.08001 * 126.38450 * 180.02562 * 10 9 8 37 37 H 1.09006 * 109.47170 * 245.00107 * 12 11 10 38 38 H 1.09002 * 109.47171 * 4.99650 * 12 11 10 39 39 H 1.08996 * 109.47112 * 54.99974 * 13 12 11 40 40 H 1.09001 * 109.58978 * 186.59933 * 17 5 4 41 41 H 1.09003 * 109.58750 * 66.17432 * 17 5 4 42 42 H 1.08998 * 109.49883 * 294.68556 * 18 17 5 43 43 H 1.08996 * 109.49579 * 174.58193 * 18 17 5 44 44 H 0.97009 * 120.00007 * 25.06727 * 21 19 2 45 45 H 0.97003 * 119.99177 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0419 -0.7236 -1.2495 5 7 3.5052 -0.8282 -1.1691 6 6 4.2818 -0.3848 -2.1775 7 8 5.4903 -0.3593 -2.0480 8 6 3.6646 0.0702 -3.4399 9 6 4.3275 0.6887 -4.5263 10 6 3.3663 0.9241 -5.4499 11 7 2.2012 0.4715 -4.9390 12 6 0.9065 0.5339 -5.6218 13 6 0.2971 -0.8679 -5.6888 14 9 -0.9875 -0.7922 -6.2376 15 9 1.0992 -1.6871 -6.4905 16 7 2.3924 -0.0271 -3.7706 17 6 4.1059 -1.4255 0.0314 18 6 3.5709 -0.6940 1.2665 19 6 2.0407 -0.7228 1.2485 20 1 1.6576 -0.2243 2.1389 21 7 1.5789 -2.1130 1.2309 22 6 1.4475 -2.8057 2.4047 23 1 1.6839 -2.3271 3.3436 24 6 1.0094 -4.1229 2.3881 25 7 0.7208 -4.7060 1.2439 26 14 0.8294 -5.0675 3.9895 27 1 -0.1494 -4.3749 4.8655 28 1 0.3500 -6.4432 3.7014 29 1 2.1453 -5.1358 4.6745 30 1 -0.3634 0.5127 0.8905 31 1 -0.3634 0.5148 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6064 -1.7216 -1.2979 34 1 1.7644 -0.1579 -2.1388 35 1 5.3789 0.9236 -4.6024 36 1 3.5054 1.3877 -6.4154 37 1 0.2371 1.1952 -5.0716 38 1 1.0468 0.9179 -6.6323 39 1 0.2390 -1.2871 -4.6843 40 1 5.1902 -1.3229 -0.0128 41 1 3.8387 -2.4807 0.0874 42 1 3.9154 0.3400 1.2547 43 1 3.9334 -1.1885 2.1677 44 1 1.3663 -2.5428 0.3876 45 1 0.4150 -5.6264 1.2323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036075621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:50 Heat of formation + Delta-G solvation = -29.583364 kcal Electronic energy + Delta-G solvation = -31198.381661 eV Core-core repulsion = 26696.364140 eV Total energy + Delta-G solvation = -4502.017522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.43006 -47.43256 -42.92206 -39.72089 -37.60807 -34.54337 -34.13546 -32.59266 -31.81045 -30.84675 -29.67076 -28.94614 -26.15976 -25.56070 -24.27777 -23.43766 -22.42086 -21.69048 -21.28431 -19.63722 -18.63951 -18.00748 -17.98475 -17.49275 -17.26274 -16.89953 -16.33482 -15.80696 -15.36779 -14.86102 -14.48178 -14.31925 -14.28007 -14.14127 -13.91286 -13.78290 -13.77099 -13.43128 -13.14249 -13.12746 -12.95347 -12.71380 -12.56127 -12.07391 -11.92273 -11.63562 -11.35075 -11.10777 -10.91339 -10.84950 -10.61609 -10.46747 -10.24569 -10.17562 -9.93533 -9.70544 -9.55958 -9.32790 -9.27299 -8.88440 -8.13846 -6.93951 -5.76311 -3.04083 1.39420 1.86850 1.99310 3.02692 3.31995 3.44352 3.49599 3.49873 3.51300 3.78304 3.82494 4.16891 4.34053 4.49167 4.60217 4.64692 4.75984 5.00159 5.24060 5.37301 5.42158 5.49009 5.55834 5.67300 5.71762 5.84355 5.87844 5.95203 6.03163 6.14804 6.26014 6.29614 6.37554 6.46629 6.53373 6.57594 6.69699 6.76842 6.83985 6.98541 7.09440 7.58919 7.71202 7.80830 8.41586 8.42566 9.54111 10.11244 10.46504 11.46230 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.003498 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.161599 B = 8003.502642 C = 9302.080588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 H 0.063 0.937 4 C 0.095 3.905 5 N -0.585 5.585 6 C 0.595 3.405 7 O -0.544 6.544 8 C 0.009 3.991 9 C -0.176 4.176 10 C -0.008 4.008 11 N -0.295 5.295 12 C 0.077 3.923 13 C 0.253 3.747 14 F -0.193 7.193 15 F -0.196 7.196 16 N -0.261 5.261 17 C 0.120 3.880 18 C -0.148 4.148 19 C 0.178 3.822 20 H 0.049 0.951 21 N -0.718 5.718 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.933 5.933 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.165 0.835 36 H 0.183 0.817 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 14.590 -16.496 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 H 0.081 0.919 4 C -0.028 4.028 5 N -0.316 5.316 6 C 0.381 3.619 7 O -0.421 6.421 8 C -0.152 4.152 9 C -0.204 4.204 10 C -0.150 4.150 11 N -0.082 5.082 12 C -0.046 4.046 13 C 0.198 3.802 14 F -0.175 7.175 15 F -0.178 7.178 16 N -0.095 5.095 17 C -0.002 4.002 18 C -0.189 4.189 19 C 0.067 3.933 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.582 5.582 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.182 0.818 36 H 0.200 0.800 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.450 14.122 -15.957 21.313 hybrid contribution 0.409 -0.533 0.183 0.696 sum -0.041 13.589 -15.774 20.820 Atomic orbital electron populations 1.21645 0.94327 1.03125 1.00181 1.21708 0.96332 0.98749 0.96071 0.91874 1.22450 0.78366 1.02268 0.99717 1.47968 1.07570 1.58443 1.17626 1.16970 0.85844 0.77615 0.81455 1.90756 1.13525 1.56431 1.81340 1.22139 0.89699 1.05622 0.97734 1.21794 1.00894 1.04920 0.92815 1.22860 0.84824 1.05571 1.01697 1.45285 1.07719 1.43347 1.11898 1.22938 0.83317 0.97699 1.00599 1.22121 0.74228 0.90230 0.93574 1.93032 1.39468 1.96802 1.88152 1.93043 1.73557 1.74533 1.76643 1.73512 1.19376 1.18201 0.98400 1.21634 0.97798 0.98118 0.82638 1.22515 1.00097 0.98744 0.97569 1.20232 0.90947 0.87331 0.94759 0.93261 1.42454 1.78999 1.07707 1.06867 1.19186 1.37101 0.93924 0.86577 0.91332 1.24685 1.02349 0.97136 0.96555 1.69639 1.51819 1.13045 1.23685 0.86317 0.77754 0.79197 0.83185 1.21413 1.21834 1.21364 0.92893 0.94048 0.91023 0.90793 0.86848 0.81751 0.79970 0.85563 0.85585 0.85213 0.90264 0.89850 0.93370 0.90796 0.78127 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.06 37.16 0.34 -1.72 16 2 C -0.11 -1.75 2.67 -90.50 -0.24 -1.99 16 3 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.10 1.54 5.09 -3.71 -0.02 1.52 16 5 N -0.59 -10.19 2.97 -173.93 -0.52 -10.71 16 6 C 0.60 10.40 7.69 -12.39 -0.10 10.30 16 7 O -0.54 -10.76 16.36 5.31 0.09 -10.68 16 8 C 0.01 0.13 6.82 -82.77 -0.56 -0.43 16 9 C -0.18 -2.02 10.81 -39.36 -0.43 -2.44 16 10 C -0.01 -0.06 11.40 -17.17 -0.20 -0.26 16 11 N -0.30 -2.69 3.39 -61.33 -0.21 -2.90 16 12 C 0.08 0.42 6.59 -4.04 -0.03 0.39 16 13 C 0.25 1.99 5.37 37.16 0.20 2.19 16 14 F -0.19 -1.64 17.34 2.25 0.04 -1.60 16 15 F -0.20 -2.08 17.32 2.25 0.04 -2.04 16 16 N -0.26 -3.26 8.06 33.42 0.27 -2.99 16 17 C 0.12 2.22 6.19 -3.71 -0.02 2.20 16 18 C -0.15 -2.68 5.78 -26.61 -0.15 -2.83 16 19 C 0.18 3.39 2.53 -67.89 -0.17 3.21 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -16.69 3.64 -53.38 -0.19 -16.88 16 22 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 26 Si 0.90 22.02 29.55 -169.99 -5.02 16.99 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.28 7.54 -51.93 -0.39 0.89 16 33 H 0.07 1.36 6.64 -51.93 -0.34 1.01 16 34 H 0.11 1.65 4.19 -67.52 -0.28 1.36 16 35 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.13 0.33 8.04 -51.93 -0.42 -0.09 16 39 H 0.13 1.07 7.95 -51.93 -0.41 0.66 16 40 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 41 H 0.08 1.76 7.74 -51.93 -0.40 1.35 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.38 9.51 5.93 -40.82 -0.24 9.27 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -32.83 372.65 -7.00 -39.83 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.20 Total: 8.55 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -1.63 Total: 3.35 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.07 Total: -60.02 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.08 Total: -3.64 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.83 -7.00 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036075621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.249 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds