Wall clock time and date at job start Wed Apr 1 2020 01:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49806 * 2 1 4 4 C 1.52765 * 109.59076 * 240.05406 * 2 1 3 5 5 N 1.46922 * 109.01019 * 185.53475 * 4 2 1 6 6 C 1.34769 * 120.63045 * 233.58028 * 5 4 2 7 7 O 1.21629 * 120.00137 * 8.31813 * 6 5 4 8 8 C 1.47161 * 120.00083 * 188.31055 * 6 5 4 9 9 C 1.38409 * 126.88451 * 27.28353 * 8 6 5 10 10 C 1.39674 * 105.35860 * 180.02562 * 9 8 6 11 11 C 1.50697 * 126.06497 * 179.97438 * 10 9 8 12 12 F 1.39904 * 109.47325 * 149.99934 * 11 10 9 13 13 F 1.39904 * 109.47559 * 29.99586 * 11 10 9 14 14 N 1.30859 * 107.86299 * 0.22753 * 10 9 8 15 15 N 1.28446 * 110.92952 * 359.61099 * 14 10 9 16 16 C 1.46497 * 125.19308 * 180.16156 * 15 14 10 17 17 C 1.46923 * 118.73558 * 53.30524 * 5 4 2 18 18 C 1.53190 * 108.77961 * 306.64575 * 17 5 4 19 19 C 1.53031 * 109.50038 * 120.07020 * 2 1 3 20 20 H 1.09004 * 109.46580 * 61.32534 * 19 2 1 21 21 N 1.46505 * 109.45180 * 301.36280 * 19 2 1 22 22 C 1.36935 * 120.00406 * 154.93940 * 21 19 2 23 23 H 1.07998 * 119.99474 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99827 * 180.02562 * 22 21 19 25 25 N 1.31611 * 119.99950 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99735 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47480 * 59.99609 * 26 24 22 28 28 H 1.48497 * 109.47208 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.47223 * 299.99880 * 26 24 22 30 30 H 1.09003 * 109.47077 * 299.93133 * 1 2 3 31 31 H 1.08997 * 109.47259 * 59.93035 * 1 2 3 32 32 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.51217 * 65.64758 * 4 2 1 34 34 H 1.09002 * 109.42917 * 305.36905 * 4 2 1 35 35 H 1.07999 * 127.31957 * 0.02562 * 9 8 6 36 36 H 1.09001 * 109.47323 * 269.99363 * 11 10 9 37 37 H 1.08997 * 109.47288 * 264.66941 * 16 15 14 38 38 H 1.09004 * 109.46596 * 24.66612 * 16 15 14 39 39 H 1.08997 * 109.47173 * 144.66560 * 16 15 14 40 40 H 1.09007 * 109.59246 * 66.43740 * 17 5 4 41 41 H 1.09005 * 109.58742 * 186.85299 * 17 5 4 42 42 H 1.09002 * 109.49959 * 174.58861 * 18 17 5 43 43 H 1.09003 * 109.49659 * 294.68194 * 18 17 5 44 44 H 0.97000 * 119.99344 * 334.93972 * 21 19 2 45 45 H 0.97008 * 120.00004 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7184 -1.2471 5 7 3.5052 -0.8282 -1.1692 6 6 4.2818 -0.3843 -2.1773 7 8 3.7884 0.2470 -3.0924 8 6 5.7267 -0.6634 -2.1709 9 6 6.3632 -1.7346 -1.5684 10 6 7.7219 -1.5577 -1.8395 11 6 8.8405 -2.4652 -1.3964 12 9 9.8788 -2.4169 -2.3327 13 9 8.3645 -3.7769 -1.2950 14 7 7.8516 -0.4612 -2.5418 15 7 6.7085 0.0833 -2.7578 16 6 6.4914 1.3193 -3.5136 17 6 4.1059 -1.4254 0.0313 18 6 3.5708 -0.6940 1.2664 19 6 2.0408 -0.7228 1.2484 20 1 1.6972 -1.7572 1.2354 21 7 1.5259 -0.0527 2.4451 22 6 1.3946 -0.7490 3.6168 23 1 1.6702 -1.7924 3.6586 24 6 0.9063 -0.1141 4.7506 25 7 0.5690 1.1570 4.6991 26 14 0.7264 -1.0642 6.3488 27 1 2.0536 -1.5801 6.7700 28 1 0.1873 -0.1657 7.4009 29 1 -0.2053 -2.2027 6.1457 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7651 -0.1495 -2.1346 34 1 1.6032 -1.7149 -1.2975 35 1 5.9064 -2.5368 -1.0079 36 1 9.2115 -2.1372 -0.4254 37 1 6.4396 2.1622 -2.8245 38 1 7.3167 1.4692 -4.2097 39 1 5.5564 1.2461 -4.0690 40 1 3.8387 -2.4808 0.0873 41 1 5.1902 -1.3229 -0.0129 42 1 3.9334 -1.1885 2.1676 43 1 3.9154 0.3400 1.2546 44 1 1.2781 0.8844 2.4074 45 1 0.2281 1.6009 5.4915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036103604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:58 Heat of formation + Delta-G solvation = -36.214390 kcal Electronic energy + Delta-G solvation = -30598.167439 eV Core-core repulsion = 26095.862375 eV Total energy + Delta-G solvation = -4502.305064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.21875 -47.24584 -43.02642 -40.07129 -37.78466 -34.99145 -34.00041 -33.12778 -31.64427 -31.17875 -29.44205 -29.03742 -26.61076 -25.74450 -25.14282 -23.50911 -22.27548 -21.89603 -21.42810 -19.94206 -19.37680 -17.87868 -17.52893 -17.47397 -17.14791 -16.71526 -16.40801 -16.35464 -15.61386 -15.10952 -14.98231 -14.34415 -14.24161 -14.05912 -13.83450 -13.79025 -13.58864 -13.39687 -13.31391 -13.13471 -12.96676 -12.85052 -12.51654 -12.31093 -11.87634 -11.77126 -11.64268 -11.28650 -11.13713 -10.98187 -10.85972 -10.72403 -10.48237 -10.27536 -10.20894 -9.81461 -9.69260 -9.60510 -9.35012 -8.94520 -8.66482 -7.02360 -5.82542 -3.11603 0.96839 1.87468 1.89111 2.78480 2.89846 3.38404 3.39452 3.44481 3.45365 3.81888 4.00589 4.21592 4.53034 4.59031 4.64772 4.84382 4.88387 4.95091 5.07324 5.14212 5.15256 5.20262 5.27284 5.31875 5.44961 5.52993 5.60646 5.67762 5.83505 5.86471 5.98720 6.05812 6.22552 6.23996 6.26699 6.36178 6.40593 6.52514 6.73129 6.84134 6.97030 7.22017 7.51428 7.63320 7.88328 8.35495 9.47064 10.03796 10.38531 11.39797 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.002930 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.280169 B = 9554.421707 C =10991.251865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.586 5.586 6 C 0.590 3.410 7 O -0.544 6.544 8 C -0.022 4.022 9 C -0.159 4.159 10 C -0.061 4.061 11 C 0.366 3.634 12 F -0.193 7.193 13 F -0.191 7.191 14 N -0.240 5.240 15 N -0.248 5.248 16 C 0.080 3.920 17 C 0.088 3.912 18 C -0.151 4.151 19 C 0.183 3.817 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.176 0.824 36 H 0.132 0.868 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.724 -4.272 -15.198 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.317 5.317 6 C 0.376 3.624 7 O -0.422 6.422 8 C -0.150 4.150 9 C -0.188 4.188 10 C -0.217 4.217 11 C 0.310 3.690 12 F -0.174 7.174 13 F -0.172 7.172 14 N -0.075 5.075 15 N -0.036 5.036 16 C -0.060 4.060 17 C -0.035 4.035 18 C -0.192 4.192 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.193 0.807 36 H 0.149 0.851 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.133 0.867 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.218 0.782 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.176 -3.259 -16.134 21.084 hybrid contribution -0.650 -0.692 1.347 1.648 sum 12.526 -3.952 -14.787 19.778 Atomic orbital electron populations 1.21656 0.93860 1.01879 1.01974 1.21670 0.96755 1.00121 0.94480 0.91194 1.21740 0.77141 1.01319 0.99822 1.47863 1.07301 1.59348 1.17169 1.16824 0.83522 0.79370 0.82646 1.90773 1.74560 1.40484 1.36400 1.21481 0.91920 0.96841 1.04781 1.22166 0.91891 1.00450 1.04247 1.22360 0.95523 0.97720 1.06145 1.19351 0.80075 0.77349 0.92177 1.93024 1.59264 1.96293 1.68860 1.93030 1.89040 1.38368 1.96787 1.73080 1.08197 1.09595 1.16588 1.45686 1.01874 1.19667 1.36368 1.22483 1.05719 0.81217 0.96582 1.22452 0.98982 0.97652 0.84372 1.22701 1.00423 1.00394 0.95718 1.20207 0.90309 0.95780 0.86436 0.93256 1.42392 1.76469 1.11399 1.05756 1.19168 1.36179 0.94099 0.87726 0.91232 1.24727 1.01933 0.96004 0.98071 1.69645 1.49788 1.09521 1.29063 0.86299 0.77773 0.78734 0.83548 1.21280 1.21756 1.21266 0.90634 0.93758 0.92948 0.89079 0.90979 0.80686 0.85121 0.89294 0.88169 0.86745 0.90833 0.89018 0.90250 0.92252 0.78218 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.03 37.16 0.34 -1.73 16 2 C -0.11 -1.69 2.44 -90.73 -0.22 -1.91 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.12 1.60 5.70 -3.93 -0.02 1.58 16 5 N -0.59 -7.62 2.98 -174.40 -0.52 -8.13 16 6 C 0.59 8.09 7.52 -12.64 -0.10 7.99 16 7 O -0.54 -8.46 14.57 5.25 0.08 -8.38 16 8 C -0.02 -0.28 6.40 -82.06 -0.52 -0.80 16 9 C -0.16 -1.75 8.23 -38.98 -0.32 -2.07 16 10 C -0.06 -0.67 6.84 -82.47 -0.56 -1.24 16 11 C 0.37 3.26 5.84 36.00 0.21 3.47 16 12 F -0.19 -2.08 17.28 2.25 0.04 -2.04 16 13 F -0.19 -1.86 17.06 2.25 0.04 -1.83 16 14 N -0.24 -2.93 11.84 33.64 0.40 -2.54 16 15 N -0.25 -2.93 3.75 -63.88 -0.24 -3.17 16 16 C 0.08 0.69 10.98 59.85 0.66 1.35 16 17 C 0.09 1.06 5.17 -3.71 -0.02 1.04 16 18 C -0.15 -2.36 5.66 -26.61 -0.15 -2.51 16 19 C 0.18 3.24 2.20 -67.89 -0.15 3.09 16 20 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 21 N -0.72 -16.56 4.41 -53.39 -0.24 -16.80 16 22 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 23 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -27.08 13.06 55.49 0.72 -26.35 16 26 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.07 1.37 7.36 -51.93 -0.38 0.99 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.23 7.00 -51.93 -0.36 0.86 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.18 1.58 6.48 -52.49 -0.34 1.24 16 36 H 0.13 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.11 1.07 6.45 -51.93 -0.34 0.73 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.99 4.31 -51.93 -0.22 0.77 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.38 9.61 7.50 -40.82 -0.31 9.30 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -31.63 372.00 -6.39 -38.02 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.14 Total: 7.63 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.11 Total: 1.48 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.13 Total: -56.99 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.08 Total: -3.87 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.63 -6.39 -38.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036103604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.808 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds