Wall clock time and date at job start Wed Apr 1 2020 01:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.52700 * 2 1 4 4 C 1.53199 * 109.49282 * 120.07526 * 2 1 3 5 5 N 1.46933 * 108.77141 * 174.58537 * 4 2 1 6 6 C 1.34777 * 120.62740 * 126.37149 * 5 4 2 7 7 O 1.21631 * 120.00015 * 351.43906 * 6 5 4 8 8 C 1.47161 * 119.99881 * 171.43975 * 6 5 4 9 9 C 1.38403 * 126.88281 * 332.78774 * 8 6 5 10 10 C 1.39674 * 105.35966 * 179.91785 * 9 8 6 11 11 C 1.50696 * 126.07323 * 180.10715 * 10 9 8 12 12 F 1.39897 * 109.47542 * 210.26269 * 11 10 9 13 13 F 1.39901 * 109.47179 * 330.26508 * 11 10 9 14 14 N 1.30862 * 107.86126 * 0.35043 * 10 9 8 15 15 N 1.28444 * 110.92637 * 359.77815 * 14 10 9 16 16 C 1.46503 * 125.19360 * 180.02562 * 15 14 10 17 17 C 1.46917 * 118.73833 * 306.39108 * 5 4 2 18 18 C 1.53191 * 108.77940 * 53.61244 * 17 5 4 19 19 C 1.53042 * 109.49764 * 239.91203 * 2 1 3 20 20 H 1.08994 * 109.44715 * 58.67399 * 19 2 1 21 21 N 1.46499 * 109.46159 * 298.70572 * 19 2 1 22 22 C 1.36937 * 119.99981 * 154.93433 * 21 19 2 23 23 H 1.07998 * 119.99909 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99950 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00169 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99864 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47270 * 59.99424 * 26 24 22 28 28 H 1.48507 * 109.46886 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.46764 * 299.99082 * 26 24 22 30 30 H 1.08999 * 109.47324 * 299.92407 * 1 2 3 31 31 H 1.09010 * 109.46604 * 59.92261 * 1 2 3 32 32 H 1.08993 * 109.47241 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58574 * 54.80335 * 4 2 1 34 34 H 1.08997 * 109.58738 * 294.37209 * 4 2 1 35 35 H 1.07995 * 127.32194 * 359.97438 * 9 8 6 36 36 H 1.09001 * 109.47126 * 90.26343 * 11 10 9 37 37 H 1.08997 * 109.47025 * 264.46440 * 16 15 14 38 38 H 1.09008 * 109.47035 * 24.46247 * 16 15 14 39 39 H 1.08996 * 109.47813 * 144.46251 * 16 15 14 40 40 H 1.09007 * 109.58522 * 173.39980 * 17 5 4 41 41 H 1.09002 * 109.59058 * 293.81933 * 17 5 4 42 42 H 1.09000 * 109.49889 * 65.30823 * 18 17 5 43 43 H 1.09000 * 109.49962 * 185.37954 * 18 17 5 44 44 H 0.96999 * 119.99830 * 334.93270 * 21 19 2 45 45 H 0.96993 * 119.99817 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7237 1.2497 5 7 3.5046 -0.8291 1.1697 6 6 4.2811 -0.3855 2.1781 7 8 3.7877 0.2459 3.0931 8 6 5.7259 -0.6651 2.1720 9 6 6.3622 -1.7359 1.5685 10 6 7.7210 -1.5592 1.8392 11 6 8.8397 -2.4652 1.3937 12 9 9.8760 -2.4232 2.3326 13 9 8.3627 -3.7758 1.2840 14 7 7.8497 -0.4699 2.5529 15 7 6.7071 0.0768 2.7657 16 6 6.4894 1.3086 3.5284 17 6 4.1052 -1.4268 -0.0305 18 6 3.5709 -0.6952 -1.2658 19 6 2.0408 -0.7232 -1.2483 20 1 1.6583 -0.2245 -2.1387 21 7 1.5784 -2.1132 -1.2306 22 6 1.4469 -2.8060 -2.4044 23 1 1.6838 -2.3276 -3.3433 24 6 1.0082 -4.1229 -2.3877 25 7 0.7190 -4.7058 -1.2436 26 14 0.8296 -5.0682 -3.9890 27 1 2.1460 -5.1372 -4.6726 28 1 0.3491 -6.4435 -3.7008 29 1 -0.1482 -4.3755 -4.8662 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5151 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6052 -1.7216 1.2982 34 1 1.7637 -0.1578 2.1389 35 1 5.9053 -2.5372 1.0068 36 1 9.2132 -2.1323 0.4253 37 1 6.2349 1.0581 4.5582 38 1 7.3985 1.9099 3.5147 39 1 5.6729 1.8743 3.0797 40 1 5.1896 -1.3247 0.0141 41 1 3.8375 -2.4819 -0.0864 42 1 3.9160 0.3387 -1.2540 43 1 3.9340 -1.1897 -2.1668 44 1 1.3653 -2.5427 -0.3874 45 1 0.4128 -5.6260 -1.2320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036103608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:03 Heat of formation + Delta-G solvation = -33.554589 kcal Electronic energy + Delta-G solvation = -31134.276640 eV Core-core repulsion = 26632.086913 eV Total energy + Delta-G solvation = -4502.189727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.09766 -47.12497 -42.90634 -39.96474 -37.77151 -34.71433 -33.84780 -33.03874 -31.55437 -31.05710 -29.27146 -28.95421 -26.47798 -25.70456 -25.09999 -23.63038 -22.61557 -21.84228 -21.34175 -19.69233 -18.63309 -17.74852 -17.48335 -17.28137 -17.23011 -16.58705 -16.29743 -16.24083 -15.45471 -15.03928 -14.68859 -14.35460 -14.19063 -13.97313 -13.87703 -13.58394 -13.46296 -13.36191 -13.27302 -13.01386 -12.89114 -12.78250 -12.57586 -12.19827 -11.72639 -11.66825 -11.47700 -11.26281 -11.04050 -10.92858 -10.84677 -10.58238 -10.52650 -10.25956 -10.03503 -9.91142 -9.60921 -9.49951 -9.20347 -8.95377 -8.39397 -7.02850 -5.83013 -3.11965 1.10251 1.99188 2.00735 2.97199 3.03788 3.39754 3.45150 3.46162 3.51395 3.92137 4.14374 4.36988 4.54063 4.67744 4.73688 4.90105 5.03124 5.09845 5.19446 5.21245 5.26459 5.28618 5.38762 5.48657 5.53981 5.64684 5.73916 5.82970 5.95703 6.00679 6.01598 6.14245 6.25006 6.30574 6.35083 6.42018 6.50668 6.61412 6.68513 6.84564 6.90650 7.43776 7.62445 7.64511 8.06128 8.35273 9.47091 10.02533 10.37627 11.39161 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.011030 B = 0.003669 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.976479 B = 7628.900677 C = 9604.628444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.120 3.880 5 N -0.581 5.581 6 C 0.587 3.413 7 O -0.548 6.548 8 C -0.022 4.022 9 C -0.156 4.156 10 C -0.061 4.061 11 C 0.366 3.634 12 F -0.194 7.194 13 F -0.189 7.189 14 N -0.242 5.242 15 N -0.251 5.251 16 C 0.091 3.909 17 C 0.095 3.905 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.718 5.718 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.009 4.009 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.178 0.822 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.280 10.995 5.894 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.001 4.001 5 N -0.311 5.311 6 C 0.373 3.627 7 O -0.427 6.427 8 C -0.149 4.149 9 C -0.184 4.184 10 C -0.218 4.218 11 C 0.311 3.689 12 F -0.175 7.175 13 F -0.170 7.170 14 N -0.077 5.077 15 N -0.039 5.039 16 C -0.048 4.048 17 C -0.026 4.026 18 C -0.190 4.190 19 C 0.067 3.933 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.205 4.205 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.195 0.805 36 H 0.148 0.852 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.738 12.020 6.830 18.798 hybrid contribution -0.709 -1.375 -0.958 1.820 sum 12.029 10.644 5.872 17.102 Atomic orbital electron populations 1.21668 0.94032 1.03300 1.00525 1.21709 0.96634 0.98845 0.95575 0.91564 1.21773 0.77301 1.02015 0.99033 1.47844 1.07233 1.58784 1.17253 1.16826 0.83502 0.79663 0.82746 1.90785 1.74657 1.40898 1.36407 1.21524 0.91968 0.96898 1.04550 1.22252 0.91816 1.00320 1.04059 1.22370 0.95578 0.97951 1.05885 1.19338 0.80098 0.77555 0.91958 1.93016 1.59448 1.96345 1.68734 1.93048 1.88973 1.38336 1.96680 1.73055 1.08200 1.09916 1.16523 1.45651 1.02028 1.19910 1.36309 1.22290 1.04317 0.81683 0.96538 1.22307 0.97713 0.99259 0.83346 1.22533 1.00505 0.98590 0.97388 1.20223 0.90761 0.87442 0.94843 0.93018 1.42459 1.79024 1.07637 1.06946 1.19159 1.37582 0.93911 0.86518 0.91299 1.24692 1.02086 0.97158 0.96578 1.69630 1.51465 1.13155 1.23718 0.86323 0.77780 0.79240 0.83129 1.21310 1.21784 1.21384 0.93729 0.92703 0.90941 0.90070 0.89514 0.80494 0.85226 0.88998 0.88393 0.88113 0.89703 0.89140 0.93399 0.90455 0.78115 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.05 37.16 0.34 -1.73 16 2 C -0.11 -1.64 2.67 -90.49 -0.24 -1.88 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.89 5.43 -3.70 -0.02 1.87 16 5 N -0.58 -8.83 2.97 -174.13 -0.52 -9.35 16 6 C 0.59 9.03 7.45 -12.64 -0.09 8.93 16 7 O -0.55 -9.33 15.11 5.25 0.08 -9.25 16 8 C -0.02 -0.30 6.40 -82.06 -0.53 -0.83 16 9 C -0.16 -2.04 8.22 -38.98 -0.32 -2.36 16 10 C -0.06 -0.77 6.84 -82.47 -0.56 -1.33 16 11 C 0.37 3.79 5.84 36.00 0.21 4.00 16 12 F -0.19 -2.32 17.28 2.25 0.04 -2.28 16 13 F -0.19 -2.25 17.06 2.25 0.04 -2.21 16 14 N -0.24 -3.19 11.84 33.64 0.40 -2.79 16 15 N -0.25 -3.19 3.75 -63.88 -0.24 -3.43 16 16 C 0.09 0.84 10.53 59.85 0.63 1.47 16 17 C 0.10 1.42 4.91 -3.72 -0.02 1.40 16 18 C -0.15 -2.31 5.78 -26.61 -0.15 -2.46 16 19 C 0.18 3.11 2.53 -67.89 -0.17 2.94 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -15.67 3.64 -53.39 -0.19 -15.86 16 22 C -0.24 -6.04 9.93 -15.06 -0.15 -6.19 16 23 H 0.07 1.70 7.83 -52.49 -0.41 1.28 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -26.28 13.06 55.49 0.72 -25.56 16 26 Si 0.90 21.24 29.55 -169.99 -5.02 16.22 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.07 1.28 7.53 -51.93 -0.39 0.89 16 33 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 34 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 35 H 0.18 2.19 6.48 -52.49 -0.34 1.85 16 36 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 39 H 0.10 0.92 7.41 -51.93 -0.38 0.53 16 40 H 0.08 1.11 4.31 -51.92 -0.22 0.88 16 41 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.38 8.99 5.93 -40.82 -0.24 8.75 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -30.39 369.05 -6.35 -36.74 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.04 Total: 8.71 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.18 Total: 3.49 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.17 Total: -56.99 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.08 Total: -4.49 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.39 -6.35 -36.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036103608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.188 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds