Wall clock time and date at job start Wed Apr 1 2020 01:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 O 1.42894 * 109.46840 * 79.46161 * 3 2 1 5 5 C 1.35710 * 116.99985 * 180.02562 * 4 3 2 6 6 C 1.38996 * 119.91639 * 179.97438 * 5 4 3 7 7 C 1.37701 * 120.09005 * 179.97438 * 6 5 4 8 8 C 1.39728 * 119.91026 * 0.02562 * 7 6 5 9 9 C 1.47612 * 120.08519 * 180.02562 * 8 7 6 10 10 O 1.21583 * 119.99718 * 29.16260 * 9 8 7 11 11 N 1.34775 * 119.99891 * 209.15346 * 9 8 7 12 12 C 1.46923 * 120.62786 * 6.18463 * 11 9 8 13 13 C 1.53201 * 108.77384 * 126.40980 * 12 11 9 14 14 C 1.53034 * 109.31206 * 54.63447 * 13 12 11 15 15 H 1.09000 * 109.45412 * 58.64695 * 14 13 12 16 16 N 1.46501 * 109.45742 * 178.61686 * 14 13 12 17 17 C 1.36937 * 119.99970 * 275.05974 * 16 14 13 18 18 H 1.08001 * 119.99676 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00428 * 179.72554 * 17 16 14 20 20 N 1.31625 * 119.99639 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00259 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47085 * 120.00037 * 21 19 17 24 24 H 1.48496 * 109.46916 * 240.00267 * 21 19 17 25 25 C 1.53048 * 109.53797 * 298.63160 * 14 13 12 26 26 C 1.46929 * 120.62872 * 186.19560 * 11 9 8 27 27 H 1.09001 * 109.69977 * 113.73749 * 26 11 9 28 28 C 1.52998 * 109.58674 * 353.38129 * 26 11 9 29 29 C 1.39725 * 119.82799 * 0.27114 * 8 7 6 30 30 C 1.37708 * 119.90958 * 359.47063 * 29 8 7 31 31 H 4.38444 * 5.44450 * 180.02562 * 4 1 2 32 32 H 1.08995 * 109.47010 * 319.46024 * 3 2 1 33 33 H 1.08997 * 109.46732 * 199.45751 * 3 2 1 34 34 H 1.08003 * 119.95024 * 0.02562 * 6 5 4 35 35 H 1.08005 * 120.04283 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.58257 * 246.19122 * 12 11 9 37 37 H 1.08996 * 109.59422 * 6.47925 * 12 11 9 38 38 H 1.09001 * 109.49705 * 294.67827 * 13 12 11 39 39 H 1.09010 * 109.49443 * 174.58276 * 13 12 11 40 40 H 0.97000 * 120.00390 * 95.07034 * 16 14 13 41 41 H 0.96996 * 119.99594 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.49858 * 181.32530 * 25 14 13 43 43 H 1.09001 * 109.49532 * 301.41633 * 25 14 13 44 44 H 1.08993 * 109.47281 * 303.62473 * 28 26 11 45 45 H 1.09003 * 109.47080 * 63.62703 * 28 26 11 46 46 H 1.09003 * 109.46842 * 183.62282 * 28 26 11 47 47 H 1.08001 * 120.04905 * 179.70541 * 29 8 7 48 48 H 1.08002 * 119.95694 * 180.24900 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1224 -0.2455 -1.3245 5 6 4.4678 -0.2780 -1.4993 6 6 4.9973 -0.5134 -2.7627 7 6 6.3618 -0.5466 -2.9442 8 6 7.2146 -0.3437 -1.8561 9 6 8.6780 -0.3779 -2.0464 10 8 9.1598 -0.0541 -3.1147 11 7 9.4800 -0.7679 -1.0359 12 6 8.9098 -1.2898 0.2136 13 6 9.5391 -2.6546 0.5105 14 6 11.0632 -2.5169 0.5245 15 1 11.3548 -1.7865 1.2792 16 7 11.6675 -3.8134 0.8407 17 6 11.8202 -4.1974 2.1463 18 1 11.4948 -3.5446 2.9427 19 6 12.3876 -5.4284 2.4459 20 7 12.7792 -6.2263 1.4751 21 14 12.5952 -5.9524 4.2268 22 1 12.0799 -4.8842 5.1205 23 1 11.8369 -7.2066 4.4654 24 1 14.0346 -6.1827 4.5104 25 6 11.5476 -2.0505 -0.8504 26 6 10.9411 -0.6789 -1.1627 27 1 11.3266 0.0597 -0.4599 28 6 11.3079 -0.2689 -2.5904 29 6 6.6785 -0.1136 -0.5865 30 6 5.3128 -0.0766 -0.4141 31 1 -1.0500 0.0002 -0.0001 32 1 3.0097 -0.7801 0.6679 33 1 3.0089 0.9698 0.3423 34 1 4.3374 -0.6696 -3.6033 35 1 6.7724 -0.7299 -3.9262 36 1 9.1278 -0.6015 1.0302 37 1 7.8306 -1.3984 0.1055 38 1 9.2451 -3.3664 -0.2609 39 1 9.1970 -3.0092 1.4829 40 1 11.9596 -4.3999 0.1254 41 1 13.1753 -7.0866 1.6845 42 1 12.6350 -1.9752 -0.8468 43 1 11.2347 -2.7679 -1.6090 44 1 10.8733 -0.9778 -3.2950 45 1 10.9195 0.7292 -2.7929 46 1 12.3924 -0.2660 -2.7002 47 1 7.3343 0.0389 0.2580 48 1 4.8976 0.1052 0.5662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044764564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:35 Heat of formation + Delta-G solvation = 56.512919 kcal Electronic energy + Delta-G solvation = -29302.516732 eV Core-core repulsion = 25326.169404 eV Total energy + Delta-G solvation = -3976.347328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.02062 -40.10325 -37.87137 -37.16862 -34.58681 -33.98146 -33.00270 -31.94335 -31.31091 -30.25459 -29.21771 -27.96759 -27.04766 -24.56275 -23.65144 -23.42802 -22.51784 -21.54956 -20.18143 -19.41026 -18.91182 -18.57080 -17.22251 -17.02791 -16.51108 -16.47821 -15.65716 -15.30977 -15.02261 -14.87563 -14.64383 -14.34483 -13.99767 -13.86086 -13.58366 -13.38509 -13.28908 -13.11080 -12.99946 -12.60017 -12.43035 -12.15944 -12.00481 -11.77527 -11.62491 -11.46850 -11.21093 -10.96183 -10.93536 -10.80559 -10.75854 -10.64690 -10.41703 -10.22335 -9.84140 -9.73212 -9.30448 -9.01369 -8.92265 -8.55694 -8.35058 -6.99411 -5.79713 -3.08912 0.74837 1.03298 1.79336 2.25548 2.76563 3.04054 3.14162 3.40275 3.45476 3.48188 3.61290 3.86602 4.36397 4.47818 4.53954 4.55506 4.62619 4.73449 4.92576 5.08354 5.08666 5.16916 5.25437 5.32475 5.33870 5.36737 5.48269 5.53185 5.62825 5.66487 5.80337 5.82455 5.91846 5.93717 6.03092 6.11114 6.15234 6.26224 6.33316 6.39669 6.45785 6.50105 6.55453 6.76969 6.90408 6.93148 7.00850 7.04296 7.54622 7.66285 8.27817 8.38487 9.49714 10.07539 10.42170 11.42872 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.002587 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.708292 B =10821.011049 C =12972.991067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.202 4.202 3 C 0.171 3.829 4 O -0.308 6.308 5 C 0.150 3.850 6 C -0.158 4.158 7 C -0.022 4.022 8 C -0.166 4.166 9 C 0.561 3.439 10 O -0.537 6.537 11 N -0.596 5.596 12 C 0.086 3.914 13 C -0.151 4.151 14 C 0.179 3.821 15 H 0.047 0.953 16 N -0.724 5.724 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.135 4.135 26 C 0.148 3.852 27 H 0.071 0.929 28 C -0.134 4.134 29 C -0.054 4.054 30 C -0.219 4.219 31 H 0.225 0.775 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.042 0.958 47 H 0.147 0.853 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.643 15.742 -4.799 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.202 4.202 3 C 0.097 3.903 4 O -0.222 6.222 5 C 0.104 3.896 6 C -0.177 4.177 7 C -0.041 4.041 8 C -0.169 4.169 9 C 0.350 3.650 10 O -0.416 6.416 11 N -0.329 5.329 12 C -0.037 4.037 13 C -0.192 4.192 14 C 0.068 3.932 15 H 0.065 0.935 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.174 4.174 26 C 0.045 3.955 27 H 0.089 0.911 28 C -0.192 4.192 29 C -0.072 4.072 30 C -0.238 4.238 31 H 0.242 0.758 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.164 0.836 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.478 15.853 -5.283 25.664 hybrid contribution 0.011 -0.724 1.197 1.399 sum -19.468 15.129 -4.086 24.992 Atomic orbital electron populations 1.25046 0.95897 1.00021 0.96343 1.22241 0.93524 1.01362 1.03101 1.19325 0.85037 1.02465 0.83467 1.86067 1.19553 1.86320 1.30247 1.19186 0.81549 0.94424 0.94412 1.20372 0.95007 1.07002 0.95278 1.21027 0.91415 0.92959 0.98661 1.19969 0.93782 1.08750 0.94430 1.18187 0.85878 0.77304 0.83647 1.90825 1.75119 1.49694 1.26000 1.48070 1.06685 1.62405 1.15717 1.22570 0.99232 0.96663 0.85206 1.22690 0.99797 0.94441 1.02273 1.20173 0.90202 0.89441 0.93352 0.93495 1.42441 1.72089 1.16297 1.05578 1.19267 1.33424 1.00132 0.84172 0.91139 1.24760 1.01763 0.97175 0.97316 1.69676 1.47276 1.10876 1.30139 0.86137 0.77396 0.78211 0.84554 1.20574 1.21902 1.21880 1.22301 1.00828 0.95391 0.98888 1.21332 0.78116 0.97550 0.98532 0.91084 1.22207 0.99058 1.03241 0.94647 1.21594 0.94762 0.94209 0.96668 1.21202 0.94106 1.09862 0.98604 0.75824 0.89087 0.89230 0.84529 0.84139 0.91344 0.88614 0.92124 0.90643 0.78250 0.93541 0.90613 0.91737 0.91033 0.91431 0.93885 0.83572 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 19.25 29.55 0.57 -0.43 16 2 C -0.20 -1.62 13.73 -37.12 -0.51 -2.12 16 3 C 0.17 1.20 5.21 34.37 0.18 1.38 16 4 O -0.31 -2.98 10.08 -18.84 -0.19 -3.17 16 5 C 0.15 1.46 6.70 -39.02 -0.26 1.20 16 6 C -0.16 -1.58 9.97 -39.50 -0.39 -1.97 16 7 C -0.02 -0.24 9.58 -39.22 -0.38 -0.62 16 8 C -0.17 -2.00 5.48 -104.96 -0.58 -2.58 16 9 C 0.56 8.05 7.37 -12.44 -0.09 7.96 16 10 O -0.54 -8.87 12.09 5.29 0.06 -8.81 16 11 N -0.60 -8.27 2.97 -166.41 -0.49 -8.76 16 12 C 0.09 1.08 4.69 -3.71 -0.02 1.07 16 13 C -0.15 -2.49 5.66 -26.61 -0.15 -2.64 16 14 C 0.18 3.37 2.73 -67.89 -0.19 3.18 16 15 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 16 N -0.72 -17.62 5.12 -53.38 -0.27 -17.89 16 17 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 21 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 C -0.14 -2.25 4.84 -26.61 -0.13 -2.37 16 26 C 0.15 2.13 3.49 -67.60 -0.24 1.89 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 C -0.13 -1.93 7.59 37.16 0.28 -1.65 16 29 C -0.05 -0.53 7.40 -39.22 -0.29 -0.83 16 30 C -0.22 -1.90 9.01 -39.49 -0.36 -2.26 16 31 H 0.23 0.59 7.80 -54.09 -0.42 0.16 16 32 H 0.09 0.50 7.65 -51.93 -0.40 0.11 16 33 H 0.09 0.46 7.65 -51.93 -0.40 0.06 16 34 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.14 1.50 7.91 -52.48 -0.42 1.09 16 36 H 0.07 0.76 8.00 -51.93 -0.42 0.34 16 37 H 0.10 1.06 4.08 -51.93 -0.21 0.85 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 40 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.15 6.75 -51.93 -0.35 0.80 16 45 H 0.07 1.01 6.75 -51.93 -0.35 0.66 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.15 1.26 5.34 -52.49 -0.28 0.98 16 48 H 0.13 0.80 6.28 -52.49 -0.33 0.47 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -32.75 389.45 -8.92 -41.67 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.81 Total: 9.12 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -2.79 Total: -7.86 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.04 Total: -53.79 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.13 Total: -11.98 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.75 -8.92 -41.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044764564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.186 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds