Wall clock time and date at job start Wed Apr 1 2020 01:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42895 * 109.47153 * 245.65448 * 3 2 1 5 5 C 1.35707 * 117.00227 * 180.02562 * 4 3 2 6 6 C 1.38999 * 119.91515 * 180.02562 * 5 4 3 7 7 C 1.37699 * 120.08687 * 180.02562 * 6 5 4 8 8 C 1.39730 * 119.91626 * 359.97438 * 7 6 5 9 9 C 1.47599 * 120.08913 * 180.02562 * 8 7 6 10 10 O 1.21575 * 120.00665 * 324.79271 * 9 8 7 11 11 N 1.34780 * 119.99619 * 144.79245 * 9 8 7 12 12 C 1.46927 * 120.63291 * 354.14080 * 11 9 8 13 13 C 1.53192 * 108.77475 * 233.58589 * 12 11 9 14 14 C 1.53038 * 109.31439 * 305.36554 * 13 12 11 15 15 H 1.08998 * 109.45805 * 181.38855 * 14 13 12 16 16 N 1.46505 * 109.45878 * 301.34414 * 14 13 12 17 17 C 1.36935 * 119.99719 * 275.06658 * 16 14 13 18 18 H 1.08002 * 120.00307 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99484 * 180.02562 * 17 16 14 20 20 N 1.31612 * 120.00149 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99705 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47146 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46918 * 120.00017 * 21 19 17 24 24 H 1.48500 * 109.47052 * 240.00026 * 21 19 17 25 25 C 1.53035 * 109.54108 * 61.36511 * 14 13 12 26 26 C 1.46935 * 120.63110 * 174.11918 * 11 9 8 27 27 H 1.08994 * 109.58599 * 246.20635 * 26 11 9 28 28 C 1.53005 * 109.58239 * 6.62449 * 26 11 9 29 29 C 1.39737 * 119.82163 * 0.27961 * 8 7 6 30 30 C 1.37703 * 119.91095 * 359.46943 * 29 8 7 31 31 H 4.38447 * 5.44553 * 179.97438 * 4 1 2 32 32 H 1.09001 * 109.46453 * 125.66032 * 3 2 1 33 33 H 1.08998 * 109.47551 * 5.66252 * 3 2 1 34 34 H 1.07994 * 119.95601 * 359.97438 * 6 5 4 35 35 H 1.08007 * 120.03968 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.58188 * 113.80066 * 12 11 9 37 37 H 1.08996 * 109.58457 * 353.37645 * 12 11 9 38 38 H 1.08999 * 109.49496 * 185.41039 * 13 12 11 39 39 H 1.09002 * 109.52317 * 65.33306 * 13 12 11 40 40 H 0.96998 * 119.99662 * 95.07498 * 16 14 13 41 41 H 0.97001 * 119.99803 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.49824 * 58.58049 * 25 14 13 43 43 H 1.08997 * 109.50091 * 178.68371 * 25 14 13 44 44 H 1.08993 * 109.46644 * 176.21223 * 28 26 11 45 45 H 1.08998 * 109.47039 * 296.21449 * 28 26 11 46 46 H 1.09003 * 109.47278 * 56.21436 * 28 26 11 47 47 H 1.07997 * 120.04560 * 179.69737 * 29 8 7 48 48 H 1.07994 * 119.95637 * 180.25666 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1221 0.5562 1.2274 5 6 4.4674 0.6307 1.3892 6 6 4.9965 1.1603 2.5604 7 6 6.3611 1.2379 2.7281 8 6 7.2142 0.7830 1.7193 9 6 8.6774 0.8640 1.8953 10 8 9.1667 1.8014 2.4951 11 7 9.4712 -0.1016 1.3910 12 6 8.8904 -1.3033 0.7767 13 6 9.4952 -2.5410 1.4469 14 6 11.0215 -2.4672 1.3628 15 1 11.4537 -3.3587 1.8171 16 7 11.4296 -2.3889 -0.0421 17 6 11.5741 -3.5347 -0.7779 18 1 11.3868 -4.4960 -0.3227 19 6 11.9613 -3.4605 -2.1089 20 7 12.1901 -2.2890 -2.6634 21 14 12.1578 -5.0235 -3.1129 22 1 11.8433 -6.2003 -2.2635 23 1 11.2294 -4.9875 -4.2714 24 1 13.5562 -5.1251 -3.6021 25 6 11.5157 -1.2248 2.1073 26 6 10.9338 0.0278 1.4446 27 1 11.3294 0.1237 0.4335 28 6 11.3096 1.2636 2.2647 29 6 6.6783 0.2562 0.5412 30 6 5.3127 0.1772 0.3832 31 1 -1.0501 0.0001 -0.0001 32 1 3.0090 0.6000 -0.8350 33 1 3.0099 -1.0218 -0.1014 34 1 4.3366 1.5120 3.3395 35 1 6.7714 1.6500 3.6383 36 1 9.1195 -1.3160 -0.2888 37 1 7.8099 -1.3012 0.9203 38 1 9.1456 -3.4384 0.9365 39 1 9.1897 -2.5749 2.4927 40 1 11.5976 -1.5255 -0.4509 41 1 12.4610 -2.2373 -3.5934 42 1 11.1910 -1.2704 3.1468 43 1 12.6042 -1.1854 2.0669 44 1 12.3939 1.3204 2.3600 45 1 10.9415 2.1584 1.7628 46 1 10.8611 1.1923 3.2556 47 1 7.3344 -0.0920 -0.2429 48 1 4.8978 -0.2337 -0.5252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044764567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:48 Heat of formation + Delta-G solvation = 51.170219 kcal Electronic energy + Delta-G solvation = -29827.659072 eV Core-core repulsion = 25851.080068 eV Total energy + Delta-G solvation = -3976.579005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.86550 -40.00276 -37.85804 -37.09193 -34.25767 -33.88868 -32.80519 -31.92112 -31.21234 -30.12905 -29.04941 -27.89692 -26.99165 -24.43454 -23.64438 -23.24741 -22.88681 -21.59091 -20.06099 -18.90125 -18.76779 -18.33224 -17.23938 -16.86240 -16.42308 -16.36454 -15.54439 -15.24352 -14.92596 -14.62801 -14.49605 -14.24504 -13.90633 -13.84360 -13.70828 -13.31870 -13.20033 -13.06850 -12.87568 -12.44149 -12.37959 -11.97802 -11.92505 -11.87041 -11.45369 -11.27893 -11.15426 -10.94864 -10.89571 -10.80139 -10.60469 -10.58900 -10.36123 -10.22677 -9.94096 -9.66208 -9.20215 -8.96584 -8.86025 -8.41095 -8.10499 -7.01323 -5.82140 -3.10892 0.88389 1.14936 1.86488 2.31649 2.89845 3.20184 3.24964 3.38715 3.45207 3.47036 3.70689 3.93914 4.48990 4.54650 4.64997 4.66358 4.73914 4.81873 5.07549 5.19553 5.25853 5.30816 5.37236 5.39644 5.43673 5.53422 5.58344 5.72198 5.77513 5.79507 5.91004 5.92927 6.02290 6.06457 6.13181 6.20004 6.24795 6.33057 6.42198 6.45386 6.50846 6.62501 6.74526 6.77851 6.84734 7.01815 7.07068 7.08496 7.66286 7.75954 8.36397 8.44204 9.47987 10.04785 10.39910 11.40343 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.003028 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.954692 B = 9243.737865 C =11440.688139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.200 4.200 3 C 0.170 3.830 4 O -0.309 6.309 5 C 0.147 3.853 6 C -0.159 4.159 7 C -0.026 4.026 8 C -0.163 4.163 9 C 0.558 3.442 10 O -0.542 6.542 11 N -0.591 5.591 12 C 0.102 3.898 13 C -0.149 4.149 14 C 0.173 3.827 15 H 0.051 0.949 16 N -0.722 5.722 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.133 4.133 26 C 0.146 3.854 27 H 0.081 0.919 28 C -0.133 4.133 29 C -0.045 4.045 30 C -0.217 4.217 31 H 0.225 0.775 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.040 0.960 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.142 0.858 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.851 5.630 8.333 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.200 4.200 3 C 0.096 3.904 4 O -0.223 6.223 5 C 0.102 3.898 6 C -0.178 4.178 7 C -0.045 4.045 8 C -0.166 4.166 9 C 0.347 3.653 10 O -0.422 6.422 11 N -0.323 5.323 12 C -0.020 4.020 13 C -0.190 4.190 14 C 0.062 3.938 15 H 0.069 0.931 16 N -0.364 5.364 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.735 3.265 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.172 4.172 26 C 0.043 3.957 27 H 0.099 0.901 28 C -0.190 4.190 29 C -0.063 4.063 30 C -0.236 4.236 31 H 0.242 0.758 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.160 0.840 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.686 5.982 8.689 20.594 hybrid contribution -0.015 -0.887 -1.178 1.475 sum -17.701 5.095 7.512 19.893 Atomic orbital electron populations 1.25032 0.95878 0.99634 0.97023 1.22263 0.93531 1.01490 1.02724 1.19330 0.84976 0.99803 0.86267 1.86051 1.19608 1.78184 1.38436 1.19163 0.81489 0.94738 0.94433 1.20329 0.94961 1.05531 0.96948 1.20980 0.91425 0.93908 0.98140 1.19988 0.93908 1.06004 0.96732 1.18193 0.85880 0.82376 0.78824 1.90811 1.74687 1.34418 1.42238 1.48072 1.06660 1.19599 1.57976 1.22182 0.97352 0.83765 0.98718 1.22511 1.00209 0.97386 0.98887 1.20205 0.91370 0.95257 0.86924 0.93142 1.42519 1.81342 1.06804 1.05774 1.19280 1.38373 0.86829 0.92391 0.91159 1.24719 1.02480 0.96519 0.97141 1.69659 1.53371 1.22093 1.12930 0.86165 0.77338 0.82686 0.80264 1.20615 1.21960 1.21944 1.22241 1.00916 0.95112 0.98943 1.21290 0.78168 0.95812 1.00400 0.90148 1.22207 0.98802 0.96841 1.01188 1.21445 0.94711 0.93411 0.96777 1.21202 0.94095 1.08124 1.00186 0.75846 0.89174 0.89087 0.84668 0.84364 0.89686 0.90033 0.90834 0.93264 0.78158 0.93560 0.92061 0.90742 0.94094 0.91388 0.91377 0.84001 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 19.25 29.55 0.57 -0.56 16 2 C -0.20 -1.76 13.73 -37.12 -0.51 -2.27 16 3 C 0.17 1.38 5.21 34.37 0.18 1.56 16 4 O -0.31 -3.26 10.08 -18.83 -0.19 -3.45 16 5 C 0.15 1.60 6.70 -39.02 -0.26 1.34 16 6 C -0.16 -1.72 9.97 -39.50 -0.39 -2.11 16 7 C -0.03 -0.31 9.60 -39.22 -0.38 -0.68 16 8 C -0.16 -2.21 5.29 -104.96 -0.56 -2.76 16 9 C 0.56 8.93 7.29 -12.44 -0.09 8.83 16 10 O -0.54 -9.69 12.22 5.30 0.06 -9.63 16 11 N -0.59 -9.48 2.97 -166.41 -0.49 -9.98 16 12 C 0.10 1.59 4.51 -3.71 -0.02 1.57 16 13 C -0.15 -2.44 5.78 -26.61 -0.15 -2.59 16 14 C 0.17 3.21 3.10 -67.89 -0.21 3.00 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 N -0.72 -16.62 4.31 -53.38 -0.23 -16.85 16 17 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 18 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -26.90 13.06 55.49 0.72 -26.17 16 21 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C -0.13 -2.20 5.07 -26.61 -0.13 -2.33 16 26 C 0.15 2.45 3.20 -67.59 -0.22 2.24 16 27 H 0.08 1.52 6.64 -51.93 -0.34 1.17 16 28 C -0.13 -2.13 7.59 37.16 0.28 -1.85 16 29 C -0.04 -0.54 7.34 -39.22 -0.29 -0.83 16 30 C -0.22 -2.26 9.01 -39.49 -0.36 -2.61 16 31 H 0.22 0.71 7.80 -54.08 -0.42 0.29 16 32 H 0.09 0.59 7.65 -51.93 -0.40 0.19 16 33 H 0.09 0.60 7.65 -51.93 -0.40 0.20 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.14 1.55 8.00 -52.48 -0.42 1.13 16 36 H 0.09 1.52 7.64 -51.93 -0.40 1.13 16 37 H 0.08 1.10 4.47 -51.93 -0.23 0.87 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.38 9.45 6.06 -40.82 -0.25 9.21 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16 46 H 0.07 1.13 6.75 -51.93 -0.35 0.78 16 47 H 0.14 1.72 6.05 -52.49 -0.32 1.40 16 48 H 0.13 1.07 6.28 -52.49 -0.33 0.74 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -31.02 386.31 -8.81 -39.83 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.71 Total: 10.71 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.78 Total: -6.82 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.00 Total: -53.00 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.13 Total: -13.08 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.02 -8.81 -39.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044764567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.004 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds