Wall clock time and date at job start Wed Apr 1 2020 01:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42896 * 109.47550 * 356.88380 * 3 2 1 5 5 C 1.35709 * 117.00183 * 179.97438 * 4 3 2 6 6 C 1.38989 * 119.91383 * 179.97438 * 5 4 3 7 7 C 1.37706 * 120.09299 * 179.97438 * 6 5 4 8 8 C 1.39735 * 119.90371 * 0.02562 * 7 6 5 9 9 C 1.47612 * 120.08257 * 180.02562 * 8 7 6 10 10 O 1.21582 * 120.00045 * 33.85752 * 9 8 7 11 11 N 1.34773 * 119.99986 * 213.84760 * 9 8 7 12 12 C 1.46929 * 120.63176 * 6.23216 * 11 9 8 13 13 C 1.53193 * 108.76501 * 233.63667 * 12 11 9 14 14 C 1.53038 * 109.31213 * 305.34233 * 13 12 11 15 15 H 1.08998 * 109.45749 * 301.37131 * 14 13 12 16 16 N 1.46500 * 109.45724 * 181.40167 * 14 13 12 17 17 C 1.36940 * 120.00405 * 84.97451 * 16 14 13 18 18 H 1.07995 * 119.99690 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00062 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00078 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99548 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47621 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46726 * 239.99571 * 21 19 17 24 24 H 1.48498 * 109.47157 * 120.00226 * 21 19 17 25 25 C 1.53037 * 109.52825 * 61.38791 * 14 13 12 26 26 C 1.46925 * 120.63450 * 186.25295 * 11 9 8 27 27 H 1.08999 * 109.70303 * 246.22959 * 26 11 9 28 28 C 1.52998 * 109.58375 * 6.58200 * 26 11 9 29 29 C 1.39731 * 119.83192 * 0.27290 * 8 7 6 30 30 C 1.37703 * 119.90567 * 359.46840 * 29 8 7 31 31 H 4.38443 * 5.44420 * 179.97438 * 4 1 2 32 32 H 1.09001 * 109.47207 * 236.87779 * 3 2 1 33 33 H 1.09012 * 109.46635 * 116.88177 * 3 2 1 34 34 H 1.08001 * 119.96012 * 0.02562 * 6 5 4 35 35 H 1.07994 * 120.05100 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.58344 * 353.41457 * 12 11 9 37 37 H 1.08996 * 109.59128 * 113.83645 * 12 11 9 38 38 H 1.09008 * 109.48553 * 185.39434 * 13 12 11 39 39 H 1.09006 * 109.51148 * 65.30419 * 13 12 11 40 40 H 0.97004 * 119.99765 * 264.97229 * 16 14 13 41 41 H 0.96995 * 119.99998 * 0.02562 * 20 19 17 42 42 H 1.09001 * 109.49578 * 58.57733 * 25 14 13 43 43 H 1.08997 * 109.49871 * 178.64344 * 25 14 13 44 44 H 1.09000 * 109.47496 * 172.12798 * 28 26 11 45 45 H 1.09000 * 109.47566 * 292.12975 * 28 26 11 46 46 H 1.09004 * 109.46996 * 52.13297 * 28 26 11 47 47 H 1.07998 * 120.04828 * 179.70443 * 29 8 7 48 48 H 1.07994 * 119.95766 * 180.25245 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.3443 0.0732 5 6 4.4685 -1.5213 0.0824 6 6 4.9984 -2.8042 0.1527 7 6 6.3631 -2.9880 0.1617 8 6 7.2154 -1.8824 0.1004 9 6 8.6789 -2.0749 0.1092 10 8 9.1668 -3.0517 -0.4256 11 7 9.4743 -1.1678 0.7099 12 6 8.8957 -0.0557 1.4763 13 6 9.4734 1.2607 0.9471 14 6 11.0018 1.1963 0.9901 15 1 11.3290 1.0166 2.0142 16 7 11.5573 2.4662 0.5160 17 6 11.7074 3.5146 1.3841 18 1 11.4159 3.4053 2.4182 19 6 12.2343 4.7177 0.9349 20 7 12.5901 4.8507 -0.3253 21 14 12.4383 6.1479 2.1191 22 1 11.9677 5.7445 3.4684 23 1 11.6390 7.3045 1.6407 24 1 13.8711 6.5318 2.1894 25 6 11.4913 0.0584 0.0913 26 6 10.9365 -1.2717 0.6105 27 1 11.3574 -1.4846 1.5932 28 6 11.3059 -2.3953 -0.3599 29 6 6.6788 -0.5938 0.0361 30 6 5.3130 -0.4188 0.0222 31 1 -1.0497 -0.0004 0.0002 32 1 3.0091 0.5624 0.8607 33 1 3.0091 0.4655 -0.9167 34 1 4.3391 -3.6583 0.1996 35 1 6.7742 -3.9852 0.2168 36 1 7.8123 -0.0538 1.3561 37 1 9.1482 -0.1681 2.5307 38 1 9.1263 2.0861 1.5688 39 1 9.1445 1.4156 -0.0806 40 1 11.8189 2.5645 -0.4130 41 1 12.4838 4.1082 -0.9402 42 1 11.1432 0.2247 -0.9281 43 1 12.5808 0.0283 0.1034 44 1 12.3807 -2.3809 -0.5405 45 1 11.0228 -3.3556 0.0712 46 1 10.7773 -2.2501 -1.3021 47 1 7.3343 0.2634 -0.0065 48 1 4.8974 0.5765 -0.0316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044764568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:01 Heat of formation + Delta-G solvation = 54.935865 kcal Electronic energy + Delta-G solvation = -29463.227562 eV Core-core repulsion = 25486.811848 eV Total energy + Delta-G solvation = -3976.415714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.06149 -40.12701 -37.89701 -37.26918 -34.80058 -33.98757 -33.06430 -32.10140 -31.33560 -30.26654 -29.06577 -27.96566 -27.04982 -24.39630 -23.50195 -23.40042 -22.76505 -21.58992 -20.41961 -19.25235 -18.91564 -18.68183 -17.33747 -17.14520 -16.53248 -16.49794 -16.00260 -15.32405 -15.08854 -14.81488 -14.66167 -14.40134 -14.09114 -13.75548 -13.68254 -13.52029 -13.35545 -13.21819 -13.05784 -12.79534 -12.48140 -12.22468 -11.97662 -11.75975 -11.70916 -11.46635 -11.29285 -10.95688 -10.85792 -10.81534 -10.63967 -10.57063 -10.44422 -10.12169 -10.07404 -9.31863 -9.27387 -9.06972 -8.94978 -8.59092 -8.38626 -7.09139 -6.14567 -3.15206 0.73498 1.01442 1.80158 2.26740 2.72176 3.00672 3.14008 3.48082 3.54497 3.55097 3.63657 3.87846 4.37802 4.45323 4.54806 4.61334 4.64758 4.75143 4.92583 5.02734 5.07421 5.07830 5.18287 5.26033 5.31548 5.34836 5.43296 5.51611 5.59184 5.65802 5.76559 5.78584 5.83914 5.92059 5.95249 6.05257 6.09574 6.11263 6.27218 6.31159 6.36106 6.37025 6.46193 6.66372 6.80257 6.92181 6.93015 7.01825 7.49838 7.76727 8.22738 8.71143 9.17630 10.04134 10.19212 11.33772 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.009664 B = 0.002789 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.592505 B =10035.456441 C =12560.757078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.202 4.202 3 C 0.170 3.830 4 O -0.308 6.308 5 C 0.150 3.850 6 C -0.158 4.158 7 C -0.024 4.024 8 C -0.167 4.167 9 C 0.562 3.438 10 O -0.537 6.537 11 N -0.597 5.597 12 C 0.080 3.920 13 C -0.151 4.151 14 C 0.185 3.815 15 H 0.049 0.951 16 N -0.735 5.735 17 C -0.331 4.331 18 H 0.065 0.935 19 C -0.045 4.045 20 N -0.944 5.944 21 Si 1.084 2.916 22 H -0.295 1.295 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.136 4.136 26 C 0.148 3.852 27 H 0.072 0.928 28 C -0.136 4.136 29 C -0.052 4.052 30 C -0.217 4.217 31 H 0.225 0.775 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.367 0.633 41 H 0.256 0.744 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.149 0.851 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.368 -13.990 2.113 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.202 4.202 3 C 0.096 3.904 4 O -0.222 6.222 5 C 0.104 3.896 6 C -0.177 4.177 7 C -0.043 4.043 8 C -0.170 4.170 9 C 0.351 3.649 10 O -0.416 6.416 11 N -0.329 5.329 12 C -0.042 4.042 13 C -0.193 4.193 14 C 0.075 3.925 15 H 0.067 0.933 16 N -0.377 5.377 17 C -0.462 4.462 18 H 0.083 0.917 19 C -0.243 4.243 20 N -0.589 5.589 21 Si 0.915 3.085 22 H -0.221 1.221 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.175 4.175 26 C 0.045 3.955 27 H 0.090 0.910 28 C -0.193 4.193 29 C -0.071 4.071 30 C -0.235 4.235 31 H 0.242 0.758 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.200 0.800 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.166 0.834 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.754 -13.040 2.232 22.951 hybrid contribution -0.662 -1.053 -0.362 1.295 sum -19.415 -14.094 1.870 24.064 Atomic orbital electron populations 1.25036 0.95886 0.96235 1.00171 1.22232 0.93504 1.03144 1.01287 1.19340 0.85045 0.82747 1.03233 1.86059 1.19489 1.28513 1.88131 1.19182 0.81581 0.94361 0.94445 1.20353 0.94961 0.94856 1.07508 1.20993 0.91448 0.98708 0.93158 1.19956 0.93698 0.94078 1.09260 1.18182 0.85961 0.82447 0.78336 1.90814 1.74902 1.29693 1.46167 1.48082 1.06592 1.26949 1.51307 1.22538 0.99694 0.86464 0.95510 1.22678 1.00253 0.95074 1.01254 1.20085 0.90311 0.85866 0.96287 0.93274 1.42455 1.75870 1.09535 1.09831 1.20083 1.40154 0.93154 0.92844 0.91676 1.25763 0.99051 0.99487 0.99976 1.70814 1.50554 1.34064 1.03503 0.83165 0.76412 0.75328 0.73558 1.22116 1.22034 1.22011 1.22319 1.01081 0.93853 1.00263 1.21291 0.78311 0.96147 0.99710 0.91045 1.22180 0.99275 0.98074 0.99767 1.21534 0.94824 0.96975 0.93728 1.21234 0.94076 0.98353 1.09887 0.75822 0.89072 0.89118 0.84534 0.84252 0.88262 0.91438 0.90461 0.92330 0.80027 0.93279 0.91911 0.90623 0.93700 0.90806 0.91682 0.83380 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 19.25 29.55 0.57 -0.48 16 2 C -0.20 -1.68 13.73 -37.12 -0.51 -2.19 16 3 C 0.17 1.28 5.21 34.37 0.18 1.45 16 4 O -0.31 -3.03 10.08 -18.83 -0.19 -3.22 16 5 C 0.15 1.49 6.70 -39.02 -0.26 1.23 16 6 C -0.16 -1.55 9.97 -39.50 -0.39 -1.95 16 7 C -0.02 -0.26 9.60 -39.22 -0.38 -0.64 16 8 C -0.17 -2.04 5.44 -104.96 -0.57 -2.61 16 9 C 0.56 8.12 7.19 -12.44 -0.09 8.03 16 10 O -0.54 -8.87 12.38 5.29 0.07 -8.80 16 11 N -0.60 -8.36 2.97 -166.41 -0.49 -8.85 16 12 C 0.08 1.04 5.53 -3.71 -0.02 1.02 16 13 C -0.15 -2.43 5.32 -26.61 -0.14 -2.57 16 14 C 0.18 3.47 2.73 -67.89 -0.19 3.29 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 N -0.74 -17.65 5.12 -53.39 -0.27 -17.93 16 17 C -0.33 -8.96 9.93 -15.06 -0.15 -9.11 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 19 C -0.05 -1.28 5.50 -17.43 -0.10 -1.37 16 20 N -0.94 -28.72 13.70 55.49 0.76 -27.96 16 21 Si 1.08 25.47 29.92 -169.99 -5.09 20.38 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C -0.14 -2.23 4.84 -26.61 -0.13 -2.36 16 26 C 0.15 2.15 3.49 -67.60 -0.24 1.92 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 C -0.14 -1.95 7.61 37.16 0.28 -1.67 16 29 C -0.05 -0.57 7.39 -39.22 -0.29 -0.86 16 30 C -0.22 -2.05 9.01 -39.49 -0.36 -2.40 16 31 H 0.23 0.64 7.80 -54.10 -0.42 0.21 16 32 H 0.09 0.54 7.65 -51.93 -0.40 0.14 16 33 H 0.09 0.55 7.65 -51.92 -0.40 0.15 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.40 7.98 -52.49 -0.42 0.98 16 36 H 0.10 1.11 3.53 -51.93 -0.18 0.93 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 39 H 0.06 0.97 7.61 -51.93 -0.40 0.57 16 40 H 0.37 9.23 6.63 -40.82 -0.27 8.96 16 41 H 0.26 7.68 6.77 -40.82 -0.28 7.40 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.10 6.68 -51.93 -0.35 0.75 16 46 H 0.06 1.03 6.81 -51.93 -0.35 0.68 16 47 H 0.15 1.63 4.99 -52.49 -0.26 1.37 16 48 H 0.14 0.96 6.28 -52.49 -0.33 0.63 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -33.15 387.11 -8.80 -41.94 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.64 Total: 9.87 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.77 Total: -11.27 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.01 Total: -54.74 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.12 Total: -12.02 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.09 Total: 20.38 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.15 -8.80 -41.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044764568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.880 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds