Wall clock time and date at job start Wed Apr 1 2020 01:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47189 * 254.92298 * 3 2 1 5 5 C 1.35708 * 116.99853 * 180.02562 * 4 3 2 6 6 C 1.39003 * 119.90889 * 180.02562 * 5 4 3 7 7 C 1.37707 * 120.08625 * 179.97438 * 6 5 4 8 8 C 1.39736 * 119.91178 * 0.02704 * 7 6 5 9 9 C 1.47596 * 120.08811 * 180.02562 * 8 7 6 10 10 O 1.21585 * 120.00078 * 33.48528 * 9 8 7 11 11 N 1.34778 * 120.00012 * 213.21162 * 9 8 7 12 12 C 1.46927 * 120.62829 * 357.93444 * 11 9 8 13 13 C 1.53192 * 108.77078 * 126.36970 * 12 11 9 14 14 C 1.53036 * 109.31564 * 54.63528 * 13 12 11 15 15 H 1.09007 * 109.46239 * 178.62148 * 14 13 12 16 16 N 1.46507 * 109.45925 * 58.65203 * 14 13 12 17 17 C 1.36928 * 119.99845 * 85.00270 * 16 14 13 18 18 H 1.08008 * 120.00437 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99951 * 179.97438 * 17 16 14 20 20 N 1.31613 * 119.99683 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00209 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46881 * 59.99913 * 21 19 17 23 23 H 1.48498 * 109.47159 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47042 * 300.00433 * 21 19 17 25 25 C 1.53039 * 109.53885 * 298.63396 * 14 13 12 26 26 C 1.46930 * 120.62837 * 177.65487 * 11 9 8 27 27 H 1.09002 * 109.58405 * 113.84462 * 26 11 9 28 28 C 1.52995 * 109.58754 * 353.42043 * 26 11 9 29 29 C 1.39739 * 119.82270 * 0.26463 * 8 7 6 30 30 C 1.37700 * 119.91007 * 359.43422 * 29 8 7 31 31 H 4.38449 * 5.44454 * 179.97438 * 4 1 2 32 32 H 1.09009 * 109.46947 * 134.92350 * 3 2 1 33 33 H 1.08998 * 109.47319 * 14.92584 * 3 2 1 34 34 H 1.07997 * 119.95698 * 359.97438 * 6 5 4 35 35 H 1.08002 * 120.04341 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.58617 * 246.15283 * 12 11 9 37 37 H 1.08994 * 109.58479 * 6.43932 * 12 11 9 38 38 H 1.09005 * 109.49604 * 174.58800 * 13 12 11 39 39 H 1.08999 * 109.50107 * 294.68184 * 13 12 11 40 40 H 0.96993 * 119.99984 * 264.99667 * 16 14 13 41 41 H 0.97008 * 119.99654 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.50205 * 181.31886 * 25 14 13 43 43 H 1.09005 * 109.49227 * 301.37843 * 25 14 13 44 44 H 1.09000 * 109.47371 * 66.76543 * 28 26 11 45 45 H 1.09004 * 109.46656 * 186.77125 * 28 26 11 46 46 H 1.08998 * 109.47082 * 306.76307 * 28 26 11 47 47 H 1.07997 * 120.04190 * 179.70271 * 29 8 7 48 48 H 1.08000 * 119.95322 * 180.29401 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1221 0.3513 1.3009 5 6 4.4675 0.3987 1.4724 6 6 4.9966 0.7328 2.7136 7 6 6.3613 0.7814 2.8918 8 6 7.2143 0.4949 1.8227 9 6 8.6775 0.5453 2.0096 10 8 9.1652 0.2304 3.0779 11 7 9.4735 0.9351 0.9942 12 6 8.9033 1.2696 -0.3180 13 6 9.3821 2.6676 -0.7217 14 6 10.9109 2.7135 -0.6705 15 1 11.2553 3.7001 -0.9809 16 7 11.4602 1.6986 -1.5730 17 6 11.6270 1.9825 -2.9021 18 1 11.3533 2.9546 -3.2852 19 6 12.1479 1.0210 -3.7572 20 7 12.4819 -0.1633 -3.2903 21 14 12.3748 1.4081 -5.5706 22 1 13.3007 2.5596 -5.7188 23 1 12.9428 0.2232 -6.2624 24 1 11.0606 1.7492 -6.1721 25 6 11.3838 2.4349 0.7581 26 6 10.9272 1.0396 1.1803 27 1 11.4289 0.2923 0.5655 28 6 11.2734 0.8125 2.6532 29 6 6.6783 0.1655 0.5750 30 6 5.3127 0.1129 0.4065 31 1 -1.0501 0.0001 -0.0002 32 1 3.0090 0.7266 -0.7277 33 1 3.0097 -0.9921 -0.2647 34 1 4.3367 0.9545 3.5392 35 1 6.7717 1.0406 3.8566 36 1 9.2367 0.5415 -1.0575 37 1 7.8152 1.2570 -0.2574 38 1 9.0452 2.8892 -1.7344 39 1 8.9727 3.4057 -0.0319 40 1 11.7057 0.8255 -1.2291 41 1 12.8456 -0.8353 -3.8880 42 1 12.4716 2.4908 0.7988 43 1 10.9560 3.1755 1.4338 44 1 11.0500 -0.2194 2.9240 45 1 12.3339 1.0083 2.8115 46 1 10.6830 1.4869 3.2734 47 1 7.3343 -0.0519 -0.2549 48 1 4.8977 -0.1463 -0.5563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044764571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:13 Heat of formation + Delta-G solvation = 63.268064 kcal Electronic energy + Delta-G solvation = -29844.890028 eV Core-core repulsion = 25868.835625 eV Total energy + Delta-G solvation = -3976.054403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.91987 -40.00772 -37.85702 -37.12932 -34.28849 -33.90107 -32.90332 -31.91261 -31.20833 -30.11642 -29.05621 -27.90397 -27.02772 -24.52136 -23.64565 -23.35645 -22.81594 -21.57413 -20.07731 -18.90456 -18.79309 -18.31567 -17.23942 -16.94055 -16.42956 -16.37386 -15.57390 -15.25909 -14.99762 -14.66505 -14.42297 -14.24006 -13.91716 -13.86819 -13.67191 -13.32469 -13.19771 -13.01055 -12.91698 -12.45373 -12.38930 -11.98226 -11.92558 -11.82641 -11.49768 -11.26030 -11.10246 -10.93355 -10.86854 -10.78803 -10.61861 -10.58548 -10.30135 -10.22909 -9.95959 -9.65404 -9.18645 -8.95489 -8.85061 -8.40806 -8.10949 -7.01118 -5.81391 -3.10339 0.87342 1.13099 1.85922 2.31077 2.90530 3.19665 3.24738 3.39636 3.45057 3.45765 3.70702 3.93324 4.47607 4.54981 4.63078 4.65918 4.73129 4.81153 5.05985 5.19041 5.23878 5.30559 5.38024 5.38940 5.43167 5.53545 5.57875 5.72062 5.76204 5.78746 5.90450 5.91851 6.02096 6.04795 6.12386 6.19371 6.23902 6.31798 6.41588 6.45170 6.51012 6.62890 6.73603 6.78409 6.84422 7.01191 7.06503 7.07957 7.65430 7.76268 8.37089 8.44854 9.48442 10.05314 10.40451 11.40919 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.010251 B = 0.002993 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.736029 B = 9352.373287 C =11492.376347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.200 4.200 3 C 0.170 3.830 4 O -0.309 6.309 5 C 0.147 3.853 6 C -0.159 4.159 7 C -0.025 4.025 8 C -0.162 4.162 9 C 0.558 3.442 10 O -0.542 6.542 11 N -0.589 5.589 12 C 0.083 3.917 13 C -0.149 4.149 14 C 0.173 3.827 15 H 0.050 0.950 16 N -0.722 5.722 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.133 4.133 26 C 0.146 3.854 27 H 0.080 0.920 28 C -0.134 4.134 29 C -0.057 4.057 30 C -0.217 4.217 31 H 0.225 0.775 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.063 0.937 47 H 0.154 0.846 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.675 1.679 9.408 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.200 4.200 3 C 0.096 3.904 4 O -0.223 6.223 5 C 0.101 3.899 6 C -0.177 4.177 7 C -0.044 4.044 8 C -0.165 4.165 9 C 0.347 3.653 10 O -0.422 6.422 11 N -0.321 5.321 12 C -0.038 4.038 13 C -0.190 4.190 14 C 0.062 3.938 15 H 0.068 0.932 16 N -0.364 5.364 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.172 4.172 26 C 0.043 3.957 27 H 0.098 0.902 28 C -0.191 4.191 29 C -0.075 4.075 30 C -0.236 4.236 31 H 0.242 0.758 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.171 0.829 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.500 1.612 9.903 21.045 hybrid contribution 0.052 -0.106 -1.449 1.454 sum -18.447 1.505 8.454 20.348 Atomic orbital electron populations 1.25033 0.95880 1.00024 0.96618 1.22260 0.93533 1.01310 1.02918 1.19330 0.84979 1.01862 0.84206 1.86053 1.19609 1.84361 1.32259 1.19170 0.81490 0.94759 0.94436 1.20338 0.94960 1.06807 0.95618 1.20980 0.91403 0.93777 0.98236 1.19984 0.93890 1.07841 0.94786 1.18169 0.85859 0.77548 0.83771 1.90810 1.74826 1.49770 1.26826 1.48062 1.07310 1.65060 1.11642 1.22646 0.98867 0.98671 0.83627 1.22508 1.00328 0.95185 1.00955 1.20205 0.90741 0.93967 0.88849 0.93164 1.42498 1.75381 1.13313 1.05213 1.19185 1.35210 0.97996 0.84672 0.91279 1.24719 1.01923 0.96140 0.98010 1.69642 1.49270 1.04610 1.34542 0.86305 0.77772 0.76908 0.85390 1.21340 1.21777 1.21344 1.22170 1.01386 0.96022 0.97657 1.21182 0.78823 0.97974 0.97688 0.90180 1.22192 0.99020 1.03855 0.94006 1.21712 0.94853 0.94321 0.96613 1.21219 0.94113 1.09215 0.99050 0.75846 0.89100 0.89163 0.84658 0.84323 0.89521 0.88578 0.90858 0.93273 0.78144 0.93444 0.90693 0.92129 0.91006 0.94044 0.91815 0.82904 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 19.25 29.55 0.57 -0.54 16 2 C -0.20 -1.74 13.73 -37.12 -0.51 -2.25 16 3 C 0.17 1.36 5.21 34.37 0.18 1.54 16 4 O -0.31 -3.23 10.08 -18.83 -0.19 -3.42 16 5 C 0.15 1.58 6.70 -39.02 -0.26 1.32 16 6 C -0.16 -1.71 9.97 -39.49 -0.39 -2.10 16 7 C -0.03 -0.30 9.59 -39.22 -0.38 -0.68 16 8 C -0.16 -2.18 5.53 -104.96 -0.58 -2.76 16 9 C 0.56 8.94 7.29 -12.44 -0.09 8.85 16 10 O -0.54 -9.76 12.27 5.29 0.06 -9.69 16 11 N -0.59 -9.48 2.98 -166.67 -0.50 -9.98 16 12 C 0.08 1.29 4.66 -3.71 -0.02 1.27 16 13 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 14 C 0.17 3.22 3.10 -67.89 -0.21 3.01 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 16 N -0.72 -16.66 4.31 -53.38 -0.23 -16.89 16 17 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 18 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 21 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.13 -2.20 5.04 -26.83 -0.14 -2.34 16 26 C 0.15 2.46 3.18 -67.82 -0.22 2.25 16 27 H 0.08 1.53 6.64 -51.93 -0.34 1.18 16 28 C -0.13 -2.14 7.60 37.16 0.28 -1.86 16 29 C -0.06 -0.68 7.43 -39.22 -0.29 -0.97 16 30 C -0.22 -2.22 9.01 -39.50 -0.36 -2.58 16 31 H 0.22 0.70 7.80 -54.08 -0.42 0.28 16 32 H 0.09 0.58 7.65 -51.92 -0.40 0.19 16 33 H 0.09 0.58 7.65 -51.93 -0.40 0.18 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.14 1.56 7.97 -52.49 -0.42 1.14 16 36 H 0.09 1.56 7.73 -51.93 -0.40 1.16 16 37 H 0.10 1.27 3.52 -53.84 -0.19 1.08 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.38 9.50 6.07 -40.82 -0.25 9.26 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.24 6.70 -51.93 -0.35 0.89 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 1.05 6.79 -51.93 -0.35 0.70 16 47 H 0.15 1.80 5.32 -52.49 -0.28 1.52 16 48 H 0.13 1.03 6.28 -52.49 -0.33 0.70 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -31.19 385.17 -8.78 -39.97 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.63 Total: 11.12 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.81 Total: -7.21 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.00 Total: -53.13 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.12 Total: -13.12 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.19 -8.78 -39.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044764571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.241 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds