Wall clock time and date at job start Wed Apr 1 2020 00:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.66387 * 2 1 4 4 C 1.54700 * 110.73986 * 236.79987 * 2 1 3 5 5 C 1.51679 * 101.89719 * 216.11668 * 4 2 1 6 6 C 1.37306 * 132.06773 * 195.79688 * 5 4 2 7 7 C 1.39810 * 119.85782 * 179.44972 * 6 5 4 8 8 C 1.47604 * 120.26792 * 179.91203 * 7 6 5 9 9 O 1.21585 * 120.00202 * 206.99814 * 8 7 6 10 10 N 1.34780 * 119.99703 * 26.72486 * 8 7 6 11 11 C 1.46753 * 125.33404 * 355.85410 * 10 8 7 12 12 C 1.54158 * 106.58517 * 161.46246 * 11 10 8 13 13 H 1.08995 * 113.23220 * 151.14253 * 12 11 10 14 14 C 1.55519 * 110.00513 * 278.72692 * 12 11 10 15 15 N 1.46654 * 108.14266 * 126.67956 * 14 12 11 16 16 C 1.36939 * 125.33578 * 180.65673 * 15 14 12 17 17 H 1.07994 * 120.00039 * 180.02562 * 16 15 14 18 18 C 1.38818 * 119.99793 * 0.03706 * 16 15 14 19 19 N 1.31615 * 119.99822 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00058 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47142 * 89.99750 * 20 18 16 22 22 H 1.48494 * 109.47416 * 209.99831 * 20 18 16 23 23 H 1.48501 * 109.46931 * 329.99876 * 20 18 16 24 24 C 1.46755 * 109.33275 * 0.68526 * 15 14 12 25 25 C 1.53980 * 106.67856 * 341.56138 * 24 15 14 26 26 H 1.09006 * 112.79835 * 151.33395 * 25 24 15 27 27 C 1.46651 * 125.33303 * 176.16538 * 10 8 7 28 28 C 1.39757 * 119.46591 * 0.18133 * 7 6 5 29 29 C 1.37464 * 120.20223 * 359.61759 * 28 7 6 30 30 C 1.39184 * 106.99049 * 15.49660 * 5 4 2 31 31 O 1.35994 * 111.18386 * 0.95757 * 30 5 4 32 32 H 1.08998 * 109.47465 * 183.20144 * 1 2 3 33 33 H 1.09007 * 109.47092 * 303.20002 * 1 2 3 34 34 H 1.09000 * 109.47352 * 63.19509 * 1 2 3 35 35 H 1.09007 * 110.94498 * 97.96892 * 4 2 1 36 36 H 1.09001 * 110.97913 * 334.28323 * 4 2 1 37 37 H 1.07997 * 120.07235 * 359.42930 * 6 5 4 38 38 H 1.09002 * 110.02109 * 280.88786 * 11 10 8 39 39 H 1.09005 * 110.01738 * 42.27772 * 11 10 8 40 40 H 1.08997 * 109.69697 * 6.98357 * 14 12 11 41 41 H 1.09006 * 109.67907 * 246.35939 * 14 12 11 42 42 H 0.97005 * 119.99886 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.01985 * 222.25872 * 24 15 14 44 44 H 1.09001 * 110.01801 * 100.86835 * 24 15 14 45 45 H 1.09001 * 109.76973 * 300.31720 * 27 10 8 46 46 H 1.09008 * 109.76816 * 61.04128 * 27 10 8 47 47 H 1.08003 * 119.89560 * 179.88129 * 28 7 6 48 48 H 1.08003 * 119.78479 * 180.32395 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0778 -0.7922 -1.2106 5 6 3.3098 -1.4519 -0.6210 6 6 4.3971 -2.0561 -1.2023 7 6 5.4140 -2.5809 -0.3990 8 6 6.5859 -3.2341 -1.0143 9 8 7.1966 -4.0889 -0.4022 10 7 6.9757 -2.8868 -2.2569 11 6 6.2744 -1.9415 -3.1334 12 6 7.2887 -1.5022 -4.2079 13 1 6.8216 -1.2308 -5.1546 14 6 8.2129 -0.3865 -3.6426 15 7 9.6051 -0.8010 -3.8444 16 6 10.7080 -0.0838 -3.4643 17 1 11.6972 -0.4722 -3.6565 18 6 10.5545 1.1422 -2.8316 19 7 9.3489 1.6156 -2.5976 20 14 12.0589 2.1209 -2.3137 21 1 12.4675 3.0232 -3.4202 22 1 11.7341 2.9286 -1.1107 23 1 13.1713 1.1889 -1.9986 24 6 9.6311 -2.1045 -4.5181 25 6 8.2362 -2.7282 -4.3279 26 1 7.9604 -3.4017 -5.1394 27 6 8.1637 -3.3993 -2.9474 28 6 5.3091 -2.4872 0.9915 29 6 4.2182 -1.8766 1.5631 30 6 3.1994 -1.3561 0.7632 31 8 2.0427 -0.7376 1.1223 32 1 -0.3634 -1.0260 0.0574 33 1 -0.3633 0.5627 0.8600 34 1 -0.3634 0.4634 -0.9172 35 1 2.3478 -0.1207 -2.0258 36 1 1.3585 -1.5394 -1.5459 37 1 4.4666 -2.1261 -2.2778 38 1 5.4195 -2.4300 -3.6010 39 1 5.9422 -1.0764 -2.5593 40 1 8.0186 -0.2525 -2.5785 41 1 8.0261 0.5481 -4.1718 42 1 9.2416 2.4721 -2.1552 43 1 10.3901 -2.7431 -4.0660 44 1 9.8389 -1.9717 -5.5798 45 1 9.0575 -3.1571 -2.3724 46 1 8.0836 -4.4799 -3.0663 47 1 6.0896 -2.8920 1.6187 48 1 4.1466 -1.8032 2.6382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049116421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:00 Heat of formation + Delta-G solvation = 3.936243 kcal Electronic energy + Delta-G solvation = -30427.457017 eV Core-core repulsion = 26448.829793 eV Total energy + Delta-G solvation = -3978.627224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39964 -40.21581 -38.36357 -36.97868 -34.99474 -33.44026 -32.39466 -31.31809 -30.74189 -30.09956 -29.18074 -26.88875 -25.72924 -25.57190 -23.90496 -22.41081 -21.96291 -21.84668 -20.07185 -19.44881 -19.40840 -17.79047 -17.27739 -16.89780 -16.61568 -15.99361 -15.84635 -15.11580 -14.81131 -14.62135 -14.15290 -13.82447 -13.78021 -13.61247 -13.30241 -13.16613 -13.13502 -12.95343 -12.79246 -12.61473 -12.39083 -12.22994 -12.09621 -11.94075 -11.61361 -11.51806 -11.36188 -11.00473 -10.90646 -10.81348 -10.79694 -10.29930 -10.12740 -10.10066 -9.85132 -9.71439 -9.60850 -9.01463 -8.62064 -8.39614 -8.16122 -6.84453 -5.73852 -3.06804 0.89980 1.23086 2.84454 3.03179 3.25498 3.39568 3.45079 3.46789 3.78558 4.15529 4.23117 4.48725 4.59491 4.63105 4.69425 4.81739 4.87328 4.99667 5.07848 5.16926 5.24573 5.25493 5.33029 5.36641 5.41423 5.49822 5.53970 5.61127 5.64321 5.70043 5.72796 5.76093 5.86847 6.02829 6.04682 6.17408 6.18842 6.21953 6.28522 6.32350 6.42265 6.53251 6.56033 6.68121 6.81446 7.00853 7.53021 7.55210 7.78426 7.79180 8.24940 8.40133 9.20967 9.81391 10.44803 11.37825 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.003282 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.342147 B = 8530.303077 C = 9318.233538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 H 0.090 0.910 4 C -0.104 4.104 5 C -0.185 4.185 6 C -0.048 4.048 7 C -0.151 4.151 8 C 0.578 3.422 9 O -0.545 6.545 10 N -0.598 5.598 11 C 0.107 3.893 12 C -0.128 4.128 13 H 0.094 0.906 14 C 0.189 3.811 15 N -0.602 5.602 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.145 3.855 25 C -0.112 4.112 26 H 0.089 0.911 27 C 0.123 3.877 28 C -0.025 4.025 29 C -0.146 4.146 30 C 0.127 3.873 31 O -0.301 6.301 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.252 0.748 43 H 0.038 0.962 44 H 0.020 0.980 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.142 0.858 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.138 -5.628 0.695 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.019 3.981 3 H 0.108 0.892 4 C -0.141 4.141 5 C -0.186 4.186 6 C -0.066 4.066 7 C -0.155 4.155 8 C 0.367 3.633 9 O -0.424 6.424 10 N -0.330 5.330 11 C -0.016 4.016 12 C -0.148 4.148 13 H 0.112 0.888 14 C 0.064 3.936 15 N -0.328 5.328 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.018 3.982 25 C -0.132 4.132 26 H 0.107 0.893 27 C 0.001 3.999 28 C -0.044 4.044 29 C -0.165 4.165 30 C 0.081 3.919 31 O -0.215 6.215 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.162 0.838 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.038 0.962 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.160 0.840 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.902 -5.888 1.413 18.898 hybrid contribution 0.771 0.735 0.112 1.071 sum -17.131 -5.152 1.525 17.954 Atomic orbital electron populations 1.21881 0.92024 1.03468 1.03218 1.23431 0.95732 0.95675 0.83268 0.89231 1.21867 0.94403 0.99341 0.98510 1.20638 0.97930 1.06151 0.93843 1.21036 0.91019 0.93548 1.00983 1.19695 0.96479 1.05098 0.94187 1.17702 0.83691 0.82121 0.79741 1.90760 1.56939 1.32757 1.61972 1.47999 1.26920 1.43757 1.14336 1.22364 0.94754 0.92503 0.92022 1.23625 0.95880 0.97651 0.97648 0.88775 1.21344 0.81629 0.91545 0.99077 1.44167 1.02386 1.17521 1.68741 1.19038 0.85355 0.99299 1.31946 0.90379 1.24783 0.96815 0.97805 1.00894 1.69940 1.19492 1.20129 1.47361 0.86116 0.81832 0.79964 0.77850 1.21600 1.21688 1.20675 1.21232 0.92942 0.88213 0.95790 1.22872 0.98128 0.96518 0.95658 0.89294 1.21807 0.88380 0.97145 0.92585 1.20925 0.96270 0.93763 0.93442 1.20169 0.92283 1.04080 0.99982 1.19803 0.86375 0.92830 0.92875 1.86796 1.34275 1.62364 1.38097 0.91423 0.91318 0.90143 0.88652 0.89062 0.83836 0.91966 0.89909 0.93187 0.93781 0.93783 0.94378 0.96219 0.90479 0.92187 0.84003 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.59 37.16 0.36 -0.57 16 2 C 0.07 0.66 4.25 -25.84 -0.11 0.55 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.10 -0.92 6.65 -26.51 -0.18 -1.10 16 5 C -0.18 -2.26 6.26 -104.13 -0.65 -2.91 16 6 C -0.05 -0.63 7.99 -39.33 -0.31 -0.95 16 7 C -0.15 -2.37 5.71 -104.92 -0.60 -2.97 16 8 C 0.58 10.58 7.63 -12.44 -0.09 10.48 16 9 O -0.55 -11.51 16.96 5.29 0.09 -11.42 16 10 N -0.60 -10.35 3.31 -173.43 -0.57 -10.92 16 11 C 0.11 1.58 4.26 -3.30 -0.01 1.57 16 12 C -0.13 -2.14 4.16 -87.39 -0.36 -2.51 16 13 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 14 C 0.19 4.35 4.86 -2.62 -0.01 4.33 16 15 N -0.60 -14.92 3.38 -170.72 -0.58 -15.49 16 16 C -0.23 -6.29 10.25 -15.06 -0.15 -6.45 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 19 N -0.92 -26.67 10.25 55.49 0.57 -26.10 16 20 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 C 0.14 2.87 6.40 -3.39 -0.02 2.85 16 25 C -0.11 -1.82 4.03 -88.48 -0.36 -2.18 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 27 C 0.12 2.15 6.23 -3.61 -0.02 2.12 16 28 C -0.03 -0.36 9.57 -39.30 -0.38 -0.74 16 29 C -0.15 -1.90 10.05 -39.36 -0.40 -2.30 16 30 C 0.13 1.66 7.04 -38.72 -0.27 1.39 16 31 O -0.30 -3.64 10.80 -19.72 -0.21 -3.85 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.68 7.93 -51.93 -0.41 0.27 16 37 H 0.14 1.67 4.35 -52.49 -0.23 1.44 16 38 H 0.06 0.73 6.92 -51.93 -0.36 0.37 16 39 H 0.08 1.28 6.19 -51.93 -0.32 0.96 16 40 H 0.05 1.31 6.80 -51.93 -0.35 0.96 16 41 H 0.04 1.13 7.45 -51.93 -0.39 0.74 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.04 0.75 7.79 -51.93 -0.40 0.35 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 1.59 7.48 -51.93 -0.39 1.20 16 46 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 47 H 0.14 1.99 7.88 -52.48 -0.41 1.58 16 48 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 376.25 15.07 5.67 5.67 Total: -1.00 -33.41 376.25 -10.77 -44.18 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.04 Total: 0.45 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -3.68 Total: 0.35 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.58 Total: -52.51 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.12 Total: -15.28 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.41 -10.77 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049116421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.119 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds