Wall clock time and date at job start Wed Apr 1 2020 00:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.66387 * 2 1 4 4 C 1.54700 * 110.73986 * 236.79987 * 2 1 3 5 5 C 1.51679 * 101.89719 * 216.11668 * 4 2 1 6 6 C 1.37306 * 132.06773 * 195.79688 * 5 4 2 7 7 C 1.39810 * 119.85782 * 179.44972 * 6 5 4 8 8 C 1.47604 * 120.26792 * 179.91203 * 7 6 5 9 9 O 1.21585 * 120.00202 * 206.99814 * 8 7 6 10 10 N 1.34780 * 119.99703 * 26.72486 * 8 7 6 11 11 C 1.46753 * 125.33404 * 355.85410 * 10 8 7 12 12 C 1.54158 * 106.58517 * 161.46246 * 11 10 8 13 13 H 1.08995 * 113.23220 * 151.14253 * 12 11 10 14 14 C 1.55519 * 110.00513 * 278.72692 * 12 11 10 15 15 N 1.46654 * 108.14266 * 126.67956 * 14 12 11 16 16 C 1.36939 * 125.33578 * 180.65673 * 15 14 12 17 17 H 1.07994 * 120.00039 * 180.02562 * 16 15 14 18 18 C 1.38818 * 119.99793 * 0.03706 * 16 15 14 19 19 N 1.31615 * 119.99822 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00058 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47142 * 89.99750 * 20 18 16 22 22 H 1.48494 * 109.47416 * 209.99831 * 20 18 16 23 23 H 1.48501 * 109.46931 * 329.99876 * 20 18 16 24 24 C 1.46755 * 109.33275 * 0.68526 * 15 14 12 25 25 C 1.53980 * 106.67856 * 341.56138 * 24 15 14 26 26 H 1.09006 * 112.79835 * 151.33395 * 25 24 15 27 27 C 1.46651 * 125.33303 * 176.16538 * 10 8 7 28 28 C 1.39757 * 119.46591 * 0.18133 * 7 6 5 29 29 C 1.37464 * 120.20223 * 359.61759 * 28 7 6 30 30 C 1.39184 * 106.99049 * 15.49660 * 5 4 2 31 31 O 1.35994 * 111.18386 * 0.95757 * 30 5 4 32 32 H 1.08998 * 109.47465 * 183.20144 * 1 2 3 33 33 H 1.09007 * 109.47092 * 303.20002 * 1 2 3 34 34 H 1.09000 * 109.47352 * 63.19509 * 1 2 3 35 35 H 1.09007 * 110.94498 * 97.96892 * 4 2 1 36 36 H 1.09001 * 110.97913 * 334.28323 * 4 2 1 37 37 H 1.07997 * 120.07235 * 359.42930 * 6 5 4 38 38 H 1.09002 * 110.02109 * 280.88786 * 11 10 8 39 39 H 1.09005 * 110.01738 * 42.27772 * 11 10 8 40 40 H 1.08997 * 109.69697 * 6.98357 * 14 12 11 41 41 H 1.09006 * 109.67907 * 246.35939 * 14 12 11 42 42 H 0.97005 * 119.99886 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.01985 * 222.25872 * 24 15 14 44 44 H 1.09001 * 110.01801 * 100.86835 * 24 15 14 45 45 H 1.09001 * 109.76973 * 300.31720 * 27 10 8 46 46 H 1.09008 * 109.76816 * 61.04128 * 27 10 8 47 47 H 1.08003 * 119.89560 * 179.88129 * 28 7 6 48 48 H 1.08003 * 119.78479 * 180.32395 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0778 -0.7922 -1.2106 5 6 3.3098 -1.4519 -0.6210 6 6 4.3971 -2.0561 -1.2023 7 6 5.4140 -2.5809 -0.3990 8 6 6.5859 -3.2341 -1.0143 9 8 7.1966 -4.0889 -0.4022 10 7 6.9757 -2.8868 -2.2569 11 6 6.2744 -1.9415 -3.1334 12 6 7.2887 -1.5022 -4.2079 13 1 6.8216 -1.2308 -5.1546 14 6 8.2129 -0.3865 -3.6426 15 7 9.6051 -0.8010 -3.8444 16 6 10.7080 -0.0838 -3.4643 17 1 11.6972 -0.4722 -3.6565 18 6 10.5545 1.1422 -2.8316 19 7 9.3489 1.6156 -2.5976 20 14 12.0589 2.1209 -2.3137 21 1 12.4675 3.0232 -3.4202 22 1 11.7341 2.9286 -1.1107 23 1 13.1713 1.1889 -1.9986 24 6 9.6311 -2.1045 -4.5181 25 6 8.2362 -2.7282 -4.3279 26 1 7.9604 -3.4017 -5.1394 27 6 8.1637 -3.3993 -2.9474 28 6 5.3091 -2.4872 0.9915 29 6 4.2182 -1.8766 1.5631 30 6 3.1994 -1.3561 0.7632 31 8 2.0427 -0.7376 1.1223 32 1 -0.3634 -1.0260 0.0574 33 1 -0.3633 0.5627 0.8600 34 1 -0.3634 0.4634 -0.9172 35 1 2.3478 -0.1207 -2.0258 36 1 1.3585 -1.5394 -1.5459 37 1 4.4666 -2.1261 -2.2778 38 1 5.4195 -2.4300 -3.6010 39 1 5.9422 -1.0764 -2.5593 40 1 8.0186 -0.2525 -2.5785 41 1 8.0261 0.5481 -4.1718 42 1 9.2416 2.4721 -2.1552 43 1 10.3901 -2.7431 -4.0660 44 1 9.8389 -1.9717 -5.5798 45 1 9.0575 -3.1571 -2.3724 46 1 8.0836 -4.4799 -3.0663 47 1 6.0896 -2.8920 1.6187 48 1 4.1466 -1.8032 2.6382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049116421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:59 Heat of formation + Delta-G solvation = -16.465739 kcal Electronic energy + Delta-G solvation = -30428.341713 eV Core-core repulsion = 26448.829793 eV Total energy + Delta-G solvation = -3979.511920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.35311 -41.52230 -39.75856 -38.11765 -36.65405 -34.36103 -34.07172 -32.18526 -32.04752 -31.62690 -30.64298 -27.75970 -27.37907 -27.07663 -25.36116 -23.65329 -22.94923 -22.65266 -21.77950 -20.87590 -20.64609 -18.91479 -18.74011 -18.27554 -17.73999 -17.39583 -16.92473 -16.64482 -16.23739 -15.91419 -15.68712 -15.12178 -14.93639 -14.73840 -14.49861 -14.35751 -14.23805 -14.08579 -13.83916 -13.69779 -13.59431 -13.40189 -13.32274 -13.26146 -13.01048 -12.91698 -12.71546 -12.70769 -12.23851 -12.03530 -11.94684 -11.86793 -11.70322 -11.58409 -11.56181 -11.29213 -11.09836 -10.69031 -10.01537 -9.72589 -9.21714 -8.85763 -7.86157 -5.19649 -0.20478 0.22686 1.42825 1.44555 1.52587 1.62115 1.93040 2.18202 2.47847 2.66989 3.25030 3.31365 3.39280 3.44973 3.53919 3.76576 3.77789 3.84638 3.92680 4.03723 4.11083 4.17462 4.22008 4.26189 4.28844 4.47677 4.49476 4.63520 4.68351 4.75537 4.77761 4.82660 4.84543 4.88412 4.90173 5.01183 5.02130 5.05478 5.10471 5.18315 5.21466 5.26397 5.33101 5.41257 5.46137 5.48009 5.68647 5.80370 6.08029 6.22536 6.43888 7.02113 7.12688 7.81552 8.41714 9.23335 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.003282 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.342147 B = 8530.303077 C = 9318.233538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 H 0.093 0.907 4 C -0.099 4.099 5 C -0.186 4.186 6 C -0.044 4.044 7 C -0.177 4.177 8 C 0.570 3.430 9 O -0.588 6.588 10 N -0.602 5.602 11 C 0.108 3.892 12 C -0.113 4.113 13 H 0.133 0.867 14 C 0.197 3.803 15 N -0.625 5.625 16 C -0.241 4.241 17 H 0.078 0.922 18 C -0.063 4.063 19 N -0.946 5.946 20 Si 0.972 3.028 21 H -0.282 1.282 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.136 3.864 25 C -0.092 4.092 26 H 0.141 0.859 27 C 0.122 3.878 28 C -0.040 4.040 29 C -0.151 4.151 30 C 0.120 3.880 31 O -0.313 6.313 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.164 0.836 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.005 0.995 41 H 0.009 0.991 42 H 0.245 0.755 43 H 0.032 0.968 44 H 0.035 0.965 45 H 0.032 0.968 46 H 0.079 0.921 47 H 0.134 0.866 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.620 -5.973 -1.434 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.010 3.990 3 H 0.111 0.889 4 C -0.135 4.135 5 C -0.187 4.187 6 C -0.062 4.062 7 C -0.180 4.180 8 C 0.362 3.638 9 O -0.470 6.470 10 N -0.333 5.333 11 C -0.014 4.014 12 C -0.133 4.133 13 H 0.150 0.850 14 C 0.072 3.928 15 N -0.351 5.351 16 C -0.370 4.370 17 H 0.096 0.904 18 C -0.257 4.257 19 N -0.595 5.595 20 Si 0.801 3.199 21 H -0.209 1.209 22 H -0.223 1.223 23 H -0.199 1.199 24 C 0.011 3.989 25 C -0.111 4.111 26 H 0.159 0.841 27 C 0.000 4.000 28 C -0.059 4.059 29 C -0.170 4.170 30 C 0.074 3.926 31 O -0.228 6.228 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.181 0.819 38 H 0.132 0.868 39 H 0.092 0.908 40 H 0.023 0.977 41 H 0.027 0.973 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.098 0.902 47 H 0.152 0.848 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.393 -6.241 -0.758 21.340 hybrid contribution 1.539 0.875 0.804 1.944 sum -18.854 -5.366 0.046 19.602 Atomic orbital electron populations 1.21905 0.89844 1.03757 1.04546 1.23776 0.97421 0.95492 0.82316 0.88884 1.22004 0.92940 0.99836 0.98760 1.21036 0.98596 1.05176 0.93860 1.21145 0.90448 0.92954 1.01640 1.19654 0.96675 1.06871 0.94783 1.18182 0.84135 0.81726 0.79774 1.90717 1.58593 1.34752 1.62954 1.48123 1.26880 1.43812 1.14458 1.22555 0.95381 0.92352 0.91090 1.23559 0.95291 0.95074 0.99371 0.84955 1.21076 0.82408 0.92968 0.96338 1.44482 1.02467 1.19233 1.68954 1.19396 0.86581 0.99672 1.31380 0.90371 1.25562 0.99368 0.99058 1.01682 1.70166 1.21105 1.20016 1.48224 0.85166 0.79027 0.78549 0.77156 1.20852 1.22342 1.19877 1.21466 0.95449 0.86218 0.95781 1.22897 0.95400 0.96651 0.96194 0.84127 1.21776 0.86986 0.98513 0.92754 1.20954 0.96900 0.94648 0.93375 1.20306 0.91972 1.03713 1.00993 1.20023 0.86567 0.92514 0.93492 1.86799 1.33655 1.62435 1.39869 0.91477 0.91248 0.87727 0.86708 0.87063 0.81901 0.86766 0.90757 0.97673 0.97253 0.94586 0.94944 0.94674 0.94957 0.90246 0.84824 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.59 71.98 0.69 -0.65 16 2 C 0.06 0.98 4.25 31.17 0.13 1.12 16 3 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 4 C -0.10 -1.40 6.65 30.74 0.20 -1.20 16 5 C -0.19 -4.18 6.26 -19.54 -0.12 -4.30 16 6 C -0.04 -1.10 7.99 22.43 0.18 -0.92 16 7 C -0.18 -5.61 5.71 -20.06 -0.11 -5.72 16 8 C 0.57 21.36 7.63 86.71 0.66 22.03 16 9 O -0.59 -26.00 16.96 -3.98 -0.07 -26.07 16 10 N -0.60 -20.42 3.31 -820.86 -2.72 -23.14 16 11 C 0.11 2.93 4.26 86.72 0.37 3.30 16 12 C -0.11 -3.49 4.16 -8.70 -0.04 -3.53 16 13 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 14 C 0.20 9.22 4.86 87.22 0.42 9.65 16 15 N -0.63 -31.52 3.38 -694.05 -2.34 -33.87 16 16 C -0.24 -13.64 10.25 84.03 0.86 -12.78 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 18 C -0.06 -3.66 5.48 84.86 0.47 -3.19 16 19 N -0.95 -56.92 10.25 21.65 0.22 -56.70 16 20 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 23 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 24 C 0.14 5.25 6.40 86.66 0.55 5.81 16 25 C -0.09 -2.72 4.03 -9.41 -0.04 -2.76 16 26 H 0.14 2.87 8.14 -2.38 -0.02 2.85 16 27 C 0.12 4.17 6.23 86.58 0.54 4.71 16 28 C -0.04 -1.21 9.57 22.45 0.21 -0.99 16 29 C -0.15 -3.97 10.05 22.41 0.23 -3.74 16 30 C 0.12 3.02 7.04 22.82 0.16 3.19 16 31 O -0.31 -7.09 10.80 -93.49 -1.01 -8.10 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.11 1.19 7.93 -2.39 -0.02 1.17 16 37 H 0.16 3.25 4.35 -2.91 -0.01 3.23 16 38 H 0.11 2.03 6.92 -2.39 -0.02 2.01 16 39 H 0.07 2.19 6.19 -2.38 -0.01 2.18 16 40 H 0.01 0.28 6.80 -2.39 -0.02 0.26 16 41 H 0.01 0.49 7.45 -2.38 -0.02 0.47 16 42 H 0.24 14.42 8.31 -92.70 -0.77 13.65 16 43 H 0.03 1.28 7.79 -2.39 -0.02 1.26 16 44 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.03 1.38 7.48 -2.39 -0.02 1.36 16 46 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 47 H 0.13 4.11 7.88 -2.91 -0.02 4.08 16 48 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -78.58 376.25 2.46 -76.12 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.97 Total: 12.99 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 5.37 Total: 10.01 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -4.84 Total: -113.70 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.08 Total: -34.17 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -78.58 2.46 -76.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049116421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.655 kcal (2) G-P(sol) polarization free energy of solvation -78.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds