Wall clock time and date at job start Wed Apr 1 2020 00:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.79698 * 2 1 4 4 C 1.54692 * 110.74758 * 123.29480 * 2 1 3 5 5 C 1.51671 * 101.88335 * 143.75576 * 4 2 1 6 6 C 1.37308 * 132.06921 * 164.28089 * 5 4 2 7 7 C 1.39809 * 119.85882 * 180.36089 * 6 5 4 8 8 C 1.47598 * 120.26903 * 180.02562 * 7 6 5 9 9 O 1.21592 * 120.00027 * 351.28768 * 8 7 6 10 10 N 1.34772 * 120.00294 * 171.28811 * 8 7 6 11 11 C 1.47412 * 125.58812 * 185.14114 * 10 8 7 12 12 C 1.54866 * 104.81570 * 204.39919 * 11 10 8 13 13 C 1.55168 * 101.73744 * 322.77547 * 12 11 10 14 14 H 1.08997 * 113.25567 * 158.11496 * 13 12 11 15 15 C 1.53750 * 108.30932 * 285.38514 * 13 12 11 16 16 N 1.46374 * 108.45430 * 123.93835 * 15 13 12 17 17 C 1.36942 * 125.49477 * 181.41866 * 16 15 13 18 18 H 1.07998 * 119.99852 * 0.31676 * 17 16 15 19 19 C 1.38817 * 119.99889 * 180.31410 * 17 16 15 20 20 N 1.31612 * 120.00269 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99679 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47469 * 60.00122 * 21 19 17 23 23 H 1.48500 * 109.47133 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47120 * 300.00035 * 21 19 17 25 25 C 1.46712 * 109.19510 * 1.71585 * 16 15 13 26 26 C 1.46707 * 125.58728 * 4.83693 * 10 8 7 27 27 H 1.08997 * 111.53266 * 56.10474 * 26 10 8 28 28 C 1.39760 * 119.46624 * 0.02562 * 7 6 5 29 29 C 1.37469 * 120.20085 * 359.84801 * 28 7 6 30 30 C 1.39184 * 106.99054 * 344.27985 * 5 4 2 31 31 O 1.35995 * 111.19029 * 359.38350 * 30 5 4 32 32 H 1.09004 * 109.46604 * 181.84118 * 1 2 3 33 33 H 1.08997 * 109.47356 * 301.83933 * 1 2 3 34 34 H 1.08999 * 109.47655 * 61.84483 * 1 2 3 35 35 H 1.08996 * 110.95068 * 261.90440 * 4 2 1 36 36 H 1.09011 * 110.94602 * 25.60905 * 4 2 1 37 37 H 1.07996 * 120.07150 * 0.38065 * 6 5 4 38 38 H 1.08997 * 110.36863 * 323.23446 * 11 10 8 39 39 H 1.08995 * 110.36729 * 85.45608 * 11 10 8 40 40 H 1.09003 * 110.97077 * 80.88537 * 12 11 10 41 41 H 1.08994 * 110.97697 * 204.65979 * 12 11 10 42 42 H 1.09008 * 109.74292 * 244.04443 * 15 13 12 43 43 H 1.08997 * 109.74733 * 4.70159 * 15 13 12 44 44 H 0.96999 * 120.00557 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.98521 * 222.43726 * 25 16 15 46 46 H 1.08997 * 110.02157 * 101.15426 * 25 16 15 47 47 H 1.08001 * 119.89884 * 179.82512 * 28 7 6 48 48 H 1.08004 * 119.78074 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0780 -0.7941 1.2092 5 6 3.3080 -1.4551 0.6171 6 6 4.3946 -2.0629 1.1963 7 6 5.4077 -2.5917 0.3909 8 6 6.5793 -3.2475 1.0038 9 8 6.7472 -3.1916 2.2068 10 7 7.4632 -3.9082 0.2301 11 6 8.6113 -4.6936 0.7181 12 6 9.6154 -4.7016 -0.4609 13 6 8.6657 -4.8059 -1.6836 14 1 9.1179 -4.4543 -2.6109 15 6 8.1321 -6.2458 -1.7594 16 7 6.6692 -6.1991 -1.7458 17 6 5.8386 -7.2876 -1.7722 18 1 6.2548 -8.2838 -1.8009 19 6 4.4619 -7.1105 -1.7619 20 7 3.9547 -5.8965 -1.7273 21 14 3.3290 -8.5953 -1.7972 22 1 3.5902 -9.4457 -0.6081 23 1 1.9156 -8.1401 -1.7800 24 1 3.5806 -9.3806 -3.0322 25 6 6.2316 -4.7993 -1.7065 26 6 7.4368 -3.9688 -1.2354 27 1 7.4487 -2.9725 -1.6773 28 6 5.3020 -2.4945 -0.9993 29 6 4.2086 -1.8863 -1.5689 30 6 3.1933 -1.3623 -0.7669 31 8 2.0391 -0.7379 -1.1237 32 1 -0.3633 -1.0272 0.0330 33 1 -0.3634 0.5421 0.8730 34 1 -0.3634 0.4849 -0.9060 35 1 2.3501 -0.1240 2.0245 36 1 1.3575 -1.5405 1.5440 37 1 4.4663 -2.1326 2.2716 38 1 9.0549 -4.2149 1.5910 39 1 8.3002 -5.7097 0.9605 40 1 10.1895 -3.7755 -0.4906 41 1 10.2759 -5.5668 -0.4050 42 1 8.4803 -6.7197 -2.6772 43 1 8.4809 -6.8136 -0.8968 44 1 2.9927 -5.7727 -1.7205 45 1 5.4047 -4.6870 -1.0052 46 1 5.9227 -4.4769 -2.7008 47 1 6.0819 -2.8981 -1.6281 48 1 4.1341 -1.8145 -2.6439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076364494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:14 Heat of formation + Delta-G solvation = 30.637611 kcal Electronic energy + Delta-G solvation = -31446.285765 eV Core-core repulsion = 27468.816399 eV Total energy + Delta-G solvation = -3977.469365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.13091 -40.36582 -38.01672 -36.79122 -34.59397 -33.16749 -32.54693 -31.64358 -30.47919 -29.79130 -28.96584 -26.58721 -26.41250 -24.75177 -23.67954 -21.88661 -21.59489 -21.55951 -20.90730 -19.75184 -18.84741 -17.78164 -16.84769 -16.70304 -16.45623 -15.52808 -15.47726 -15.04385 -14.67001 -14.22029 -14.01083 -13.79963 -13.63396 -13.38046 -13.17200 -13.04693 -12.97671 -12.72962 -12.60060 -12.31867 -12.25007 -12.02924 -11.94616 -11.87120 -11.41296 -11.26695 -11.10147 -11.04807 -10.74419 -10.64808 -10.58645 -10.47087 -10.22634 -9.98525 -9.83635 -9.71172 -9.42013 -8.68294 -8.50402 -8.18512 -7.77306 -6.84979 -5.69220 -3.08175 1.28019 1.71114 3.17639 3.36094 3.39957 3.44711 3.45088 3.46025 4.21069 4.46775 4.49165 4.52791 4.72785 4.78262 4.85878 5.05074 5.13984 5.16647 5.18747 5.32278 5.37959 5.47401 5.47504 5.53612 5.56246 5.71491 5.72783 5.72918 5.78901 5.85846 5.92522 5.95504 5.99184 6.04029 6.13662 6.29407 6.32143 6.36886 6.47776 6.62139 6.63326 6.65412 6.72177 6.80501 6.88325 7.20464 7.41917 7.58444 7.75998 8.00830 8.30091 8.64192 9.19038 9.80770 10.42230 11.36616 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.009603 B = 0.004827 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.079389 B = 5799.428767 C = 7702.392344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 H 0.085 0.915 4 C -0.101 4.101 5 C -0.198 4.198 6 C -0.010 4.010 7 C -0.159 4.159 8 C 0.586 3.414 9 O -0.558 6.558 10 N -0.593 5.593 11 C 0.111 3.889 12 C -0.124 4.124 13 C -0.109 4.109 14 H 0.099 0.901 15 C 0.141 3.859 16 N -0.596 5.596 17 C -0.231 4.231 18 H 0.077 0.923 19 C -0.004 4.004 20 N -0.914 5.914 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.141 3.859 26 C 0.087 3.913 27 H 0.091 0.909 28 C -0.055 4.055 29 C -0.138 4.138 30 C 0.132 3.868 31 O -0.301 6.301 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.023 0.977 43 H 0.026 0.974 44 H 0.254 0.746 45 H 0.116 0.884 46 H 0.027 0.973 47 H 0.173 0.827 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 12.368 1.712 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 H 0.103 0.897 4 C -0.138 4.138 5 C -0.199 4.199 6 C -0.029 4.029 7 C -0.162 4.162 8 C 0.377 3.623 9 O -0.439 6.439 10 N -0.325 5.325 11 C -0.011 4.011 12 C -0.163 4.163 13 C -0.128 4.128 14 H 0.117 0.883 15 C 0.015 3.985 16 N -0.322 5.322 17 C -0.359 4.359 18 H 0.095 0.905 19 C -0.200 4.200 20 N -0.561 5.561 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.016 3.984 26 C -0.017 4.017 27 H 0.108 0.892 28 C -0.072 4.072 29 C -0.156 4.156 30 C 0.086 3.914 31 O -0.215 6.215 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.148 0.852 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.041 0.959 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.133 0.867 46 H 0.044 0.956 47 H 0.189 0.811 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.820 12.385 2.193 12.708 hybrid contribution -0.772 -0.957 -0.025 1.230 sum 1.047 11.428 2.168 11.679 Atomic orbital electron populations 1.21880 0.92310 1.03571 1.02880 1.23357 0.95616 0.95292 0.83760 0.89749 1.21805 0.94822 0.99094 0.98072 1.20489 0.98018 1.07523 0.93823 1.20164 0.90270 0.92536 0.99920 1.19527 0.97008 1.05857 0.93792 1.17684 0.81431 0.77659 0.85490 1.90704 1.76011 1.62872 1.14306 1.48045 1.27812 1.49777 1.06839 1.22165 0.85765 0.96271 0.96904 1.22822 0.96854 1.02261 0.94325 1.23084 0.94615 0.97176 0.97965 0.88300 1.21160 0.86463 0.92618 0.98250 1.44057 0.99003 1.02254 1.86907 1.18945 0.87119 0.85526 1.44268 0.90504 1.24761 0.96580 0.96753 1.01945 1.69775 1.11218 1.18608 1.56533 0.86206 0.80033 0.81718 0.77829 1.21238 1.21599 1.21199 1.22286 0.93174 0.82774 1.00163 1.23144 0.99333 0.98770 0.80475 0.89218 1.22604 0.98249 0.91696 0.94684 1.20140 0.92280 1.03464 0.99741 1.19822 0.86013 0.92699 0.92870 1.86800 1.34989 1.62160 1.37570 0.91310 0.90481 0.91384 0.89382 0.89245 0.85206 0.90884 0.91080 0.91056 0.89895 0.95940 0.95589 0.93556 0.86667 0.95551 0.81075 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.60 37.16 0.36 -1.00 16 2 C 0.08 0.88 4.26 -25.84 -0.11 0.77 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.10 -1.24 6.65 -26.51 -0.18 -1.42 16 5 C -0.20 -3.24 6.25 -104.13 -0.65 -3.89 16 6 C -0.01 -0.18 9.58 -39.33 -0.38 -0.55 16 7 C -0.16 -3.08 5.38 -104.92 -0.56 -3.64 16 8 C 0.59 12.11 7.57 -12.44 -0.09 12.01 16 9 O -0.56 -12.61 16.61 5.28 0.09 -12.53 16 10 N -0.59 -11.17 3.01 -166.10 -0.50 -11.67 16 11 C 0.11 1.85 6.47 -2.56 -0.02 1.83 16 12 C -0.12 -1.63 6.31 -24.60 -0.16 -1.79 16 13 C -0.11 -1.68 4.27 -87.87 -0.38 -2.06 16 14 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 15 C 0.14 2.74 6.39 -3.72 -0.02 2.71 16 16 N -0.60 -14.53 3.37 -172.23 -0.58 -15.11 16 17 C -0.23 -6.27 10.25 -15.05 -0.15 -6.42 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 20 N -0.91 -25.88 10.17 55.49 0.56 -25.31 16 21 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.14 3.18 3.24 -3.53 -0.01 3.17 16 26 C 0.09 1.54 2.74 -66.21 -0.18 1.36 16 27 H 0.09 1.37 6.31 -51.93 -0.33 1.05 16 28 C -0.05 -1.00 6.77 -39.29 -0.27 -1.27 16 29 C -0.14 -2.41 10.05 -39.36 -0.40 -2.81 16 30 C 0.13 2.26 7.05 -38.72 -0.27 1.99 16 31 O -0.30 -4.74 10.80 -19.72 -0.21 -4.95 16 32 H 0.07 0.69 8.11 -51.93 -0.42 0.26 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.07 7.90 -51.92 -0.41 0.66 16 37 H 0.13 2.25 7.69 -52.49 -0.40 1.84 16 38 H 0.07 1.15 7.98 -51.93 -0.41 0.74 16 39 H 0.07 1.31 7.49 -51.93 -0.39 0.92 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.95 7.96 -51.93 -0.41 0.54 16 42 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.03 0.51 6.78 -51.93 -0.35 0.16 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.12 2.94 3.92 -51.93 -0.20 2.74 16 46 H 0.03 0.63 7.88 -51.93 -0.41 0.22 16 47 H 0.17 3.03 2.00 -56.09 -0.11 2.92 16 48 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -32.81 368.35 -10.46 -43.27 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.78 Total: 4.84 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -3.56 Total: -1.20 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.52 Total: -52.09 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.13 Total: -17.48 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.81 -10.46 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076364494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.911 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds