Wall clock time and date at job start Wed Apr 1 2020 01:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.29030 * 2 1 4 4 C 1.54003 * 110.32771 * 237.86169 * 2 1 3 5 5 N 1.47481 * 107.08454 * 242.31073 * 4 2 1 6 6 C 1.34774 * 127.03524 * 154.51874 * 5 4 2 7 7 O 1.21602 * 120.00600 * 185.52371 * 6 5 4 8 8 C 1.47435 * 119.99963 * 5.52398 * 6 5 4 9 9 C 1.38043 * 126.41328 * 24.36178 * 8 6 5 10 10 N 1.34259 * 107.41487 * 179.74015 * 9 8 6 11 11 C 1.46500 * 125.75167 * 180.21252 * 10 9 8 12 12 N 1.39935 * 108.49417 * 0.23001 * 10 9 8 13 13 C 1.30447 * 108.89668 * 359.97438 * 12 10 9 14 14 C 1.50700 * 125.98980 * 179.97438 * 13 12 10 15 15 F 1.39898 * 109.47255 * 120.02284 * 14 13 12 16 16 F 1.39897 * 109.46886 * 240.02760 * 14 13 12 17 17 C 1.48115 * 105.93230 * 334.77749 * 5 4 2 18 18 C 1.54594 * 103.42581 * 39.02552 * 17 5 4 19 19 H 1.09004 * 110.57574 * 81.16434 * 18 17 5 20 20 C 1.52993 * 110.99370 * 204.37070 * 18 17 5 21 21 N 1.46495 * 109.47138 * 288.65533 * 20 18 17 22 22 C 1.36937 * 119.99937 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99982 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00405 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99754 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00512 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46935 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46989 * 119.99812 * 26 24 22 29 29 H 1.48499 * 109.47662 * 240.00107 * 26 24 22 30 30 H 1.09007 * 109.47261 * 180.68573 * 1 2 3 31 31 H 1.09003 * 109.47149 * 300.68268 * 1 2 3 32 32 H 1.08998 * 109.47238 * 60.68412 * 1 2 3 33 33 H 1.09001 * 109.91296 * 122.94713 * 4 2 1 34 34 H 1.09003 * 109.90921 * 1.67321 * 4 2 1 35 35 H 1.08001 * 126.29406 * 0.02562 * 9 8 6 36 36 H 1.08995 * 109.47939 * 90.00076 * 11 10 9 37 37 H 1.09004 * 109.47208 * 210.00261 * 11 10 9 38 38 H 1.09007 * 109.47377 * 329.99265 * 11 10 9 39 39 H 1.09000 * 109.46683 * 0.02562 * 14 13 12 40 40 H 1.09004 * 110.66232 * 157.50893 * 17 5 4 41 41 H 1.08997 * 110.66689 * 280.62355 * 17 5 4 42 42 H 1.09008 * 109.46882 * 48.65046 * 20 18 17 43 43 H 1.09001 * 109.47240 * 168.64991 * 20 18 17 44 44 H 0.96998 * 120.00037 * 359.97438 * 21 20 18 45 45 H 0.96992 * 119.99894 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 -1.2228 5 7 2.8297 -1.9203 -0.7101 6 6 3.0645 -3.0859 -1.3446 7 8 3.6287 -3.9923 -0.7624 8 6 2.6374 -3.2622 -2.7446 9 6 2.4318 -2.2597 -3.6711 10 7 2.0570 -2.8449 -4.8199 11 6 1.7409 -2.1508 -6.0707 12 7 2.0189 -4.2295 -4.6209 13 6 2.3599 -4.4888 -3.3888 14 6 2.4466 -5.8571 -2.7632 15 9 3.7530 -6.0839 -2.3171 16 9 1.5644 -5.9313 -1.6800 17 6 3.2816 -1.5367 0.6473 18 6 2.0694 -0.7719 1.2264 19 1 1.3210 -1.4692 1.6032 20 6 2.5071 0.1967 2.3267 21 7 2.9002 -0.5616 3.5169 22 6 3.3308 0.0974 4.6374 23 1 3.3811 1.1762 4.6435 24 6 3.7027 -0.6211 5.7653 25 7 3.6420 -1.9359 5.7578 26 14 4.2908 0.2779 7.2935 27 1 4.2674 1.7420 7.0463 28 1 3.3956 -0.0456 8.4334 29 1 5.6764 -0.1480 7.6161 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3633 0.5244 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 2.7166 -0.1222 -1.8112 34 1 1.2333 -1.1174 -1.8348 35 1 2.5549 -1.1998 -3.5040 36 1 2.6469 -2.0466 -6.6676 37 1 1.0023 -2.7261 -6.6289 38 1 1.3380 -1.1631 -5.8464 39 1 2.1788 -6.6121 -3.5024 40 1 3.4981 -2.4221 1.2451 41 1 4.1541 -0.8857 0.5926 42 1 3.3540 0.7866 1.9757 43 1 1.6799 0.8613 2.5761 44 1 2.8547 -1.5305 3.5115 45 1 3.9015 -2.4379 6.5460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106259708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:47 Heat of formation + Delta-G solvation = -35.726100 kcal Electronic energy + Delta-G solvation = -30538.521605 eV Core-core repulsion = 26036.237714 eV Total energy + Delta-G solvation = -4502.283891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.90365 -46.91940 -41.89029 -39.75690 -37.66419 -34.64060 -34.19485 -32.87840 -31.49206 -31.02293 -29.04935 -28.68375 -26.67756 -26.01242 -25.13551 -23.39309 -22.35699 -21.09607 -21.03080 -19.87636 -19.62717 -17.61101 -17.28008 -17.23865 -17.02603 -16.73340 -16.12566 -15.99539 -15.76597 -15.30197 -14.61346 -14.29007 -14.13938 -13.83111 -13.74228 -13.48249 -13.44686 -13.25557 -13.22019 -13.15756 -12.94998 -12.82548 -12.72863 -12.32524 -11.99402 -11.86091 -11.73214 -11.26536 -11.21414 -11.09201 -10.83924 -10.54985 -10.45041 -10.32565 -10.13950 -9.96396 -9.79805 -9.62949 -9.12847 -8.84418 -8.51569 -6.88028 -5.70919 -3.00584 1.08987 1.55377 1.69131 3.00768 3.23585 3.41800 3.47011 3.51773 3.54766 3.89974 4.09400 4.21795 4.49720 4.51139 4.54632 4.58889 4.65224 4.81648 4.83564 4.93816 4.95129 4.99746 5.18869 5.28223 5.35064 5.51722 5.55705 5.61934 5.64829 5.78665 5.81484 5.98534 6.09932 6.16400 6.20389 6.23259 6.27847 6.44991 6.54078 6.74348 6.87649 6.90887 7.67452 7.74137 8.33056 8.47035 9.58218 10.15832 10.49991 11.51635 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.002783 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.893232 B =10057.600081 C =11307.767519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.102 3.898 5 N -0.618 5.618 6 C 0.601 3.399 7 O -0.517 6.517 8 C -0.245 4.245 9 C 0.096 3.904 10 N -0.353 5.353 11 C 0.095 3.905 12 N -0.264 5.264 13 C 0.047 3.953 14 C 0.361 3.639 15 F -0.174 7.174 16 F -0.185 7.185 17 C 0.117 3.883 18 C -0.102 4.102 19 H 0.084 0.916 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.192 0.808 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 1.306 -28.656 29.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.022 4.022 5 N -0.352 5.352 6 C 0.389 3.611 7 O -0.393 6.393 8 C -0.260 4.260 9 C -0.053 4.053 10 N -0.133 5.133 11 C -0.046 4.046 12 N -0.087 5.087 13 C -0.121 4.121 14 C 0.306 3.694 15 F -0.155 7.155 16 F -0.166 7.166 17 C -0.004 4.004 18 C -0.122 4.122 19 H 0.102 0.898 20 C 0.038 3.962 21 N -0.377 5.377 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.209 0.791 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.142 0.858 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.077 0.424 -29.511 30.351 hybrid contribution 0.550 0.776 1.587 1.851 sum -6.527 1.201 -27.924 28.702 Atomic orbital electron populations 1.21832 0.94187 1.02036 1.01805 1.22084 0.96319 0.99658 0.93865 0.89398 1.22335 0.95065 0.87615 0.97172 1.48620 1.53797 1.14433 1.18385 1.16746 0.79160 0.81086 0.84082 1.90887 1.42156 1.39401 1.66816 1.20214 1.17303 0.91900 0.96582 1.23358 0.96735 0.99770 0.85469 1.48322 1.50285 1.04233 1.10425 1.22102 1.03174 0.96948 0.82356 1.77020 1.23131 0.92132 1.16369 1.22872 1.00796 0.96299 0.92145 1.19183 0.74265 0.91430 0.84568 1.93107 1.36915 1.94874 1.90619 1.93063 1.68475 1.96858 1.58197 1.22500 0.96657 1.00209 0.81041 1.22517 0.97225 0.97848 0.94596 0.89757 1.20611 0.96492 0.92700 0.86402 1.42388 1.79229 1.06007 1.10117 1.19234 1.36010 0.91220 0.90755 0.91178 1.24760 1.02395 0.95484 0.98312 1.69677 1.54270 1.04509 1.29341 0.86136 0.78106 0.78563 0.83469 1.20614 1.21913 1.21874 0.92582 0.91771 0.92932 0.91880 0.91041 0.79104 0.89806 0.88503 0.88561 0.85756 0.89053 0.90697 0.96156 0.95982 0.78125 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.90 37.16 0.33 -1.09 16 2 C -0.10 -1.12 3.17 -89.24 -0.28 -1.40 16 3 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 4 C 0.10 1.02 4.94 -2.98 -0.01 1.01 16 5 N -0.62 -8.93 3.29 -171.25 -0.56 -9.49 16 6 C 0.60 9.86 7.79 -12.52 -0.10 9.76 16 7 O -0.52 -10.67 15.05 5.28 0.08 -10.59 16 8 C -0.25 -3.22 5.82 -105.06 -0.61 -3.83 16 9 C 0.10 0.84 9.72 -16.56 -0.16 0.68 16 10 N -0.35 -2.85 3.98 -67.60 -0.27 -3.12 16 11 C 0.09 0.27 11.44 59.85 0.68 0.95 16 12 N -0.26 -2.91 12.50 33.90 0.42 -2.49 16 13 C 0.05 0.61 6.69 -82.02 -0.55 0.06 16 14 C 0.36 4.62 5.21 36.01 0.19 4.80 16 15 F -0.17 -2.72 15.76 2.25 0.04 -2.68 16 16 F -0.18 -2.79 17.27 2.25 0.04 -2.76 16 17 C 0.12 1.96 6.46 -2.32 -0.01 1.94 16 18 C -0.10 -1.61 2.60 -88.93 -0.23 -1.84 16 19 H 0.08 1.47 7.86 -51.93 -0.41 1.06 16 20 C 0.17 3.20 5.58 -4.05 -0.02 3.18 16 21 N -0.73 -18.57 5.52 -59.91 -0.33 -18.90 16 22 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 23 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 26 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.47 7.44 -51.93 -0.39 0.09 16 34 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 35 H 0.19 1.00 6.04 -52.49 -0.32 0.69 16 36 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 39 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.83 7.81 -51.93 -0.41 1.43 16 41 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 42 H 0.02 0.39 8.00 -51.92 -0.42 -0.02 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 45 H 0.25 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -37.69 379.43 -6.52 -44.21 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.33 Total: 3.67 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.03 Total: 6.81 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.02 Total: -62.06 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.07 Total: -5.44 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.69 -6.52 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106259708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.486 kcal (2) G-P(sol) polarization free energy of solvation -37.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds