Wall clock time and date at job start Wed Apr 1 2020 01:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.29030 * 2 1 4 4 C 1.54003 * 110.32771 * 237.86169 * 2 1 3 5 5 N 1.47481 * 107.08454 * 242.31073 * 4 2 1 6 6 C 1.34774 * 127.03524 * 154.51874 * 5 4 2 7 7 O 1.21602 * 120.00600 * 185.52371 * 6 5 4 8 8 C 1.47435 * 119.99963 * 5.52398 * 6 5 4 9 9 C 1.38043 * 126.41328 * 24.36178 * 8 6 5 10 10 N 1.34259 * 107.41487 * 179.74015 * 9 8 6 11 11 C 1.46500 * 125.75167 * 180.21252 * 10 9 8 12 12 N 1.39935 * 108.49417 * 0.23001 * 10 9 8 13 13 C 1.30447 * 108.89668 * 359.97438 * 12 10 9 14 14 C 1.50700 * 125.98980 * 179.97438 * 13 12 10 15 15 F 1.39898 * 109.47255 * 120.02284 * 14 13 12 16 16 F 1.39897 * 109.46886 * 240.02760 * 14 13 12 17 17 C 1.48115 * 105.93230 * 334.77749 * 5 4 2 18 18 C 1.54594 * 103.42581 * 39.02552 * 17 5 4 19 19 H 1.09004 * 110.57574 * 81.16434 * 18 17 5 20 20 C 1.52993 * 110.99370 * 204.37070 * 18 17 5 21 21 N 1.46495 * 109.47138 * 288.65533 * 20 18 17 22 22 C 1.36937 * 119.99937 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99982 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00405 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99754 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00512 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46935 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46989 * 119.99812 * 26 24 22 29 29 H 1.48499 * 109.47662 * 240.00107 * 26 24 22 30 30 H 1.09007 * 109.47261 * 180.68573 * 1 2 3 31 31 H 1.09003 * 109.47149 * 300.68268 * 1 2 3 32 32 H 1.08998 * 109.47238 * 60.68412 * 1 2 3 33 33 H 1.09001 * 109.91296 * 122.94713 * 4 2 1 34 34 H 1.09003 * 109.90921 * 1.67321 * 4 2 1 35 35 H 1.08001 * 126.29406 * 0.02562 * 9 8 6 36 36 H 1.08995 * 109.47939 * 90.00076 * 11 10 9 37 37 H 1.09004 * 109.47208 * 210.00261 * 11 10 9 38 38 H 1.09007 * 109.47377 * 329.99265 * 11 10 9 39 39 H 1.09000 * 109.46683 * 0.02562 * 14 13 12 40 40 H 1.09004 * 110.66232 * 157.50893 * 17 5 4 41 41 H 1.08997 * 110.66689 * 280.62355 * 17 5 4 42 42 H 1.09008 * 109.46882 * 48.65046 * 20 18 17 43 43 H 1.09001 * 109.47240 * 168.64991 * 20 18 17 44 44 H 0.96998 * 120.00037 * 359.97438 * 21 20 18 45 45 H 0.96992 * 119.99894 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 -1.2228 5 7 2.8297 -1.9203 -0.7101 6 6 3.0645 -3.0859 -1.3446 7 8 3.6287 -3.9923 -0.7624 8 6 2.6374 -3.2622 -2.7446 9 6 2.4318 -2.2597 -3.6711 10 7 2.0570 -2.8449 -4.8199 11 6 1.7409 -2.1508 -6.0707 12 7 2.0189 -4.2295 -4.6209 13 6 2.3599 -4.4888 -3.3888 14 6 2.4466 -5.8571 -2.7632 15 9 3.7530 -6.0839 -2.3171 16 9 1.5644 -5.9313 -1.6800 17 6 3.2816 -1.5367 0.6473 18 6 2.0694 -0.7719 1.2264 19 1 1.3210 -1.4692 1.6032 20 6 2.5071 0.1967 2.3267 21 7 2.9002 -0.5616 3.5169 22 6 3.3308 0.0974 4.6374 23 1 3.3811 1.1762 4.6435 24 6 3.7027 -0.6211 5.7653 25 7 3.6420 -1.9359 5.7578 26 14 4.2908 0.2779 7.2935 27 1 4.2674 1.7420 7.0463 28 1 3.3956 -0.0456 8.4334 29 1 5.6764 -0.1480 7.6161 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3633 0.5244 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 2.7166 -0.1222 -1.8112 34 1 1.2333 -1.1174 -1.8348 35 1 2.5549 -1.1998 -3.5040 36 1 2.6469 -2.0466 -6.6676 37 1 1.0023 -2.7261 -6.6289 38 1 1.3380 -1.1631 -5.8464 39 1 2.1788 -6.6121 -3.5024 40 1 3.4981 -2.4221 1.2451 41 1 4.1541 -0.8857 0.5926 42 1 3.3540 0.7866 1.9757 43 1 1.6799 0.8613 2.5761 44 1 2.8547 -1.5305 3.5115 45 1 3.9015 -2.4379 6.5460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106259708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:46 Heat of formation + Delta-G solvation = -63.315052 kcal Electronic energy + Delta-G solvation = -30539.717952 eV Core-core repulsion = 26036.237714 eV Total energy + Delta-G solvation = -4503.480237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.97635 -48.02439 -42.67052 -40.88661 -38.91692 -36.44193 -34.83445 -34.24507 -33.02682 -32.08485 -30.42056 -29.44448 -27.65680 -27.16269 -26.32778 -25.00739 -23.42528 -22.26783 -21.94857 -21.06974 -20.59687 -19.15594 -18.42106 -18.28472 -18.21390 -17.81622 -17.12905 -16.93688 -16.68909 -16.43763 -16.23664 -15.54420 -15.35050 -15.16421 -14.90776 -14.85137 -14.55594 -14.38544 -14.26956 -14.02789 -13.97204 -13.63731 -13.57288 -13.45350 -13.29313 -13.10427 -12.88740 -12.77055 -12.58935 -12.40783 -12.09169 -12.05571 -11.93959 -11.70983 -11.51785 -11.42920 -11.04673 -10.92845 -10.81367 -9.99093 -9.63490 -8.98585 -7.92985 -5.22785 0.38267 0.59308 1.11214 1.47250 1.49011 1.58988 1.89977 2.17740 2.56448 2.57683 3.09467 3.30700 3.40033 3.45513 3.57669 3.75253 3.81687 3.85123 3.94127 4.04909 4.21098 4.23716 4.28204 4.40347 4.45570 4.52865 4.55727 4.58730 4.65630 4.74943 4.81666 4.83819 4.86614 4.92401 5.07911 5.12884 5.24321 5.30061 5.37442 5.51101 5.57785 5.70277 6.13438 6.28268 6.56855 7.15756 7.33777 8.10929 8.32054 9.31044 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.002783 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.893232 B =10057.600081 C =11307.767519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.112 0.888 4 C 0.098 3.902 5 N -0.616 5.616 6 C 0.594 3.406 7 O -0.580 6.580 8 C -0.287 4.287 9 C 0.129 3.871 10 N -0.339 5.339 11 C 0.080 3.920 12 N -0.272 5.272 13 C 0.028 3.972 14 C 0.348 3.652 15 F -0.197 7.197 16 F -0.205 7.205 17 C 0.121 3.879 18 C -0.094 4.094 19 H 0.058 0.942 20 C 0.166 3.834 21 N -0.750 5.750 22 C -0.240 4.240 23 H 0.082 0.918 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.975 3.025 27 H -0.260 1.260 28 H -0.295 1.295 29 H -0.296 1.296 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.236 0.764 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.167 0.833 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.033 0.967 43 H 0.032 0.968 44 H 0.370 0.630 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 5.144 -32.177 33.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.130 0.870 4 C -0.024 4.024 5 N -0.349 5.349 6 C 0.384 3.616 7 O -0.460 6.460 8 C -0.302 4.302 9 C -0.022 4.022 10 N -0.118 5.118 11 C -0.057 4.057 12 N -0.096 5.096 13 C -0.139 4.139 14 C 0.293 3.707 15 F -0.178 7.178 16 F -0.187 7.187 17 C -0.002 4.002 18 C -0.114 4.114 19 H 0.076 0.924 20 C 0.039 3.961 21 N -0.392 5.392 22 C -0.372 4.372 23 H 0.100 0.900 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.805 3.195 27 H -0.184 1.184 28 H -0.222 1.222 29 H -0.224 1.224 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.152 0.848 39 H 0.184 0.816 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.201 0.799 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.272 4.343 -33.117 34.410 hybrid contribution 0.854 -0.331 2.518 2.680 sum -7.418 4.012 -30.599 31.740 Atomic orbital electron populations 1.21827 0.93087 1.01466 1.03204 1.22107 0.97162 1.00149 0.91398 0.86986 1.22716 0.96222 0.86332 0.97086 1.48644 1.53699 1.15343 1.17233 1.17334 0.78275 0.80595 0.85384 1.90842 1.45092 1.41542 1.68555 1.20050 1.20881 0.93671 0.95585 1.23805 0.93655 1.00562 0.84225 1.48818 1.48051 1.03237 1.11701 1.22666 1.04434 0.98201 0.80434 1.76974 1.23126 0.94333 1.15136 1.22812 1.02047 0.96129 0.92933 1.19791 0.72882 0.93558 0.84499 1.93046 1.38667 1.95134 1.90996 1.93007 1.69022 1.97076 1.59546 1.22246 0.97448 0.98189 0.82338 1.22332 0.96199 0.97220 0.95670 0.92386 1.20806 0.96881 0.93056 0.85312 1.42689 1.79298 1.05689 1.11567 1.19713 1.34154 0.91860 0.91430 0.89992 1.25654 1.03753 0.96232 1.01775 1.69865 1.56408 1.06292 1.29919 0.85037 0.76836 0.78381 0.79294 1.18410 1.22232 1.22377 0.94120 0.92787 0.89181 0.87469 0.88692 0.74836 0.88176 0.87879 0.84794 0.81577 0.94180 0.90314 0.94944 0.95020 0.79922 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.90 71.98 0.64 -1.70 16 2 C -0.09 -1.70 3.17 -9.90 -0.03 -1.73 16 3 H 0.11 1.70 7.85 -2.39 -0.02 1.68 16 4 C 0.10 1.57 4.94 86.53 0.43 1.99 16 5 N -0.62 -17.57 3.29 -813.96 -2.68 -20.25 16 6 C 0.59 20.08 7.79 86.67 0.67 20.75 16 7 O -0.58 -26.02 15.05 -4.04 -0.06 -26.08 16 8 C -0.29 -7.24 5.82 -20.15 -0.12 -7.36 16 9 C 0.13 1.73 9.72 84.28 0.82 2.55 16 10 N -0.34 -4.09 3.98 -367.77 -1.46 -5.55 16 11 C 0.08 0.03 11.44 127.77 1.46 1.49 16 12 N -0.27 -5.46 12.50 -46.67 -0.58 -6.05 16 13 C 0.03 0.72 6.69 43.52 0.29 1.01 16 14 C 0.35 9.33 5.21 71.24 0.37 9.70 16 15 F -0.20 -6.67 15.76 44.97 0.71 -5.96 16 16 F -0.21 -6.68 17.27 44.97 0.78 -5.90 16 17 C 0.12 4.20 6.46 86.61 0.56 4.76 16 18 C -0.09 -2.99 2.60 -9.70 -0.03 -3.01 16 19 H 0.06 2.14 7.86 -2.39 -0.02 2.12 16 20 C 0.17 6.33 5.58 86.38 0.48 6.81 16 21 N -0.75 -39.11 5.52 -343.46 -1.90 -41.01 16 22 C -0.24 -13.60 9.99 84.03 0.84 -12.76 16 23 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 24 C -0.08 -4.89 5.50 84.86 0.47 -4.43 16 25 N -0.97 -62.77 13.06 21.65 0.28 -62.49 16 26 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 27 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 28 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 29 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 30 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 0.88 7.44 -2.39 -0.02 0.86 16 34 H 0.09 1.14 6.43 -2.39 -0.02 1.12 16 35 H 0.24 0.85 6.04 -2.91 -0.02 0.84 16 36 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.13 -0.87 8.14 -2.38 -0.02 -0.89 16 39 H 0.17 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.04 1.78 7.81 -2.38 -0.02 1.76 16 41 H 0.08 2.63 7.94 -2.39 -0.02 2.61 16 42 H 0.03 1.19 8.00 -2.38 -0.02 1.17 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 44 H 0.37 21.30 7.67 -92.71 -0.71 20.59 16 45 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -90.97 379.43 4.29 -86.68 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.32 Total: 19.12 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 6.86 Total: 18.08 kcal Atomic # 7 Polarization: -129.00 SS G_CDS: -6.34 Total: -135.34 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.06 Total: -26.08 kcal Atomic # 9 Polarization: -13.35 SS G_CDS: 1.49 Total: -11.86 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -90.97 4.29 -86.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106259708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.366 kcal (2) G-P(sol) polarization free energy of solvation -90.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds