Wall clock time and date at job start Wed Apr 1 2020 01:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.44464 * 2 1 4 4 C 1.53041 * 109.46018 * 119.97220 * 2 1 3 5 5 C 1.53195 * 109.31051 * 181.38824 * 4 2 1 6 6 N 1.46930 * 108.88951 * 305.29009 * 5 4 2 7 7 C 1.34782 * 120.62700 * 233.67785 * 6 5 4 8 8 O 1.21623 * 119.99603 * 171.33309 * 7 6 5 9 9 C 1.47161 * 120.00106 * 351.33136 * 7 6 5 10 10 C 1.38401 * 126.88324 * 332.53763 * 9 7 6 11 11 C 1.39674 * 105.35609 * 179.97438 * 10 9 7 12 12 N 1.30861 * 107.86637 * 0.02562 * 11 10 9 13 13 N 1.28446 * 110.91936 * 359.70879 * 12 11 10 14 14 C 1.46502 * 125.18494 * 180.28229 * 13 12 11 15 15 F 1.39900 * 109.47100 * 126.95583 * 14 13 12 16 16 F 1.39906 * 109.46991 * 246.95395 * 14 13 12 17 17 C 1.47197 * 118.55763 * 53.54055 * 6 5 4 18 18 C 1.53044 * 109.45575 * 240.03512 * 2 1 3 19 19 H 1.08993 * 109.49969 * 298.56267 * 18 2 1 20 20 C 1.53001 * 109.49715 * 58.63133 * 18 2 1 21 21 N 1.46494 * 109.47360 * 184.99359 * 20 18 2 22 22 C 1.36932 * 120.00509 * 180.02562 * 21 20 18 23 23 H 1.08005 * 119.99505 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00615 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99357 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00460 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46968 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46944 * 119.99696 * 26 24 22 29 29 H 1.48497 * 109.47157 * 240.00006 * 26 24 22 30 30 H 1.09003 * 109.47002 * 300.02727 * 1 2 3 31 31 H 1.08994 * 109.47259 * 60.03282 * 1 2 3 32 32 H 1.09002 * 109.46933 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.50041 * 61.43113 * 4 2 1 34 34 H 1.09006 * 109.49298 * 301.33067 * 4 2 1 35 35 H 1.08997 * 109.58610 * 65.14598 * 5 4 2 36 36 H 1.09004 * 109.58504 * 185.43627 * 5 4 2 37 37 H 1.08000 * 127.32521 * 359.97438 * 10 9 7 38 38 H 1.08005 * 126.06568 * 179.97438 * 11 10 9 39 39 H 1.08997 * 109.47448 * 6.95618 * 14 13 12 40 40 H 1.08999 * 109.53822 * 186.67714 * 17 6 5 41 41 H 1.09002 * 109.67970 * 66.36602 * 17 6 5 42 42 H 1.09001 * 109.47430 * 305.00122 * 20 18 2 43 43 H 1.09008 * 109.46870 * 64.99468 * 20 18 2 44 44 H 0.97010 * 119.99645 * 0.02562 * 21 20 18 45 45 H 0.97003 * 119.99860 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5714 -0.6886 1.2642 6 7 4.0707 -1.2499 0.0014 7 6 4.9645 -2.2588 0.0043 8 8 5.2513 -2.8200 -1.0359 9 6 5.5932 -2.6812 1.2660 10 6 5.8163 -1.8988 2.3856 11 6 6.4320 -2.7446 3.3112 12 7 6.5520 -3.9248 2.7587 13 7 6.0685 -3.9255 1.5688 14 6 6.0353 -5.0833 0.6718 15 9 4.7284 -5.2807 0.2133 16 9 6.8820 -4.8533 -0.4180 17 6 3.5714 -0.6885 -1.2643 18 6 2.0398 -0.7208 -1.2502 19 1 1.6978 -1.7556 -1.2384 20 6 1.5020 -0.0193 -2.4990 21 7 1.8909 -0.7774 -3.6907 22 6 1.5197 -0.3379 -4.9333 23 1 0.9398 0.5676 -5.0347 24 6 1.8878 -1.0565 -6.0624 25 7 2.5941 -2.1602 -5.9386 26 14 1.3808 -0.4572 -7.7574 27 1 0.5989 0.7983 -7.6252 28 1 2.5937 -0.2006 -8.5749 29 1 0.5474 -1.4926 -8.4197 30 1 -0.3633 0.5143 0.8898 31 1 -0.3633 0.5133 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6978 -1.7557 1.2382 34 1 1.6573 -0.2208 2.1398 35 1 3.9143 0.3409 1.3673 36 1 3.9417 -1.2826 2.0998 37 1 5.5673 -0.8561 2.5161 38 1 6.7528 -2.4725 4.3059 39 1 6.3692 -5.9700 1.2105 40 1 3.9416 -1.2844 -2.0986 41 1 3.9142 0.3408 -1.3700 42 1 0.4149 0.0383 -2.4437 43 1 1.9166 0.9872 -2.5573 44 1 2.4115 -1.5909 -3.5994 45 1 2.8517 -2.6623 -6.7276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132847021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:00 Heat of formation + Delta-G solvation = -25.703487 kcal Electronic energy + Delta-G solvation = -31315.589103 eV Core-core repulsion = 26813.739826 eV Total energy + Delta-G solvation = -4501.849278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.41584 -47.51345 -42.88906 -40.07123 -37.92011 -35.14209 -33.84083 -33.01698 -32.04184 -31.27782 -29.73625 -28.24245 -26.56581 -25.70515 -24.19847 -23.25763 -22.38241 -21.98219 -21.22999 -20.38846 -19.57753 -18.06541 -17.90935 -17.68209 -17.10555 -16.77102 -16.11542 -15.68786 -15.23885 -14.87994 -14.83264 -14.48705 -14.24412 -14.20643 -13.91564 -13.81452 -13.74949 -13.58002 -13.39625 -13.15499 -12.98489 -12.66317 -12.52160 -12.27564 -11.90798 -11.75648 -11.60253 -11.20104 -10.99285 -10.88064 -10.79867 -10.62832 -10.30206 -10.18106 -10.06880 -9.94111 -9.84828 -9.58660 -9.36257 -8.83117 -8.57941 -6.85329 -5.68663 -2.98555 0.87876 1.46429 2.17182 2.74401 2.99842 3.34307 3.47613 3.52391 3.55345 3.76857 4.11596 4.37494 4.51948 4.60733 4.70020 4.74263 4.82395 4.87876 5.03642 5.13578 5.23972 5.30260 5.38022 5.59939 5.62828 5.67089 5.70105 5.78846 5.90957 5.93309 5.95183 6.02123 6.06296 6.15615 6.22638 6.32371 6.44589 6.53603 6.57063 6.81340 6.89847 7.30609 7.49961 7.75772 8.05271 8.48777 9.59845 10.17980 10.51935 11.53556 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.003494 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.848304 B = 8011.784835 C = 9720.661755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.089 3.911 6 N -0.593 5.593 7 C 0.575 3.425 8 O -0.509 6.509 9 C -0.003 4.003 10 C -0.189 4.189 11 C 0.023 3.977 12 N -0.271 5.271 13 N -0.330 5.330 14 C 0.499 3.501 15 F -0.167 7.167 16 F -0.162 7.162 17 C 0.123 3.877 18 C -0.101 4.101 19 H 0.075 0.925 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.173 0.827 38 H 0.196 0.804 39 H 0.168 0.832 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.019 0.981 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.213 0.042 24.795 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.034 4.034 6 N -0.326 5.326 7 C 0.360 3.640 8 O -0.383 6.383 9 C -0.129 4.129 10 C -0.217 4.217 11 C -0.157 4.157 12 N -0.099 5.099 13 N -0.126 5.126 14 C 0.366 3.634 15 F -0.148 7.148 16 F -0.143 7.143 17 C 0.002 3.998 18 C -0.121 4.121 19 H 0.093 0.907 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.190 0.810 38 H 0.213 0.787 39 H 0.185 0.815 40 H 0.124 0.876 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.671 -1.415 24.084 24.783 hybrid contribution -0.421 0.923 -1.176 1.553 sum 5.250 -0.492 22.908 23.507 Atomic orbital electron populations 1.21881 0.94898 1.01992 1.01736 1.21106 0.96064 0.99353 0.93872 0.90961 1.21986 0.94399 1.01677 0.98559 1.22280 0.95137 0.99486 0.86469 1.47895 1.41576 1.34673 1.08495 1.16970 0.80023 0.80735 0.86275 1.90971 1.61700 1.53307 1.32358 1.21819 1.05709 0.87258 0.98136 1.22543 1.05516 1.01597 0.92000 1.23780 1.01938 0.88735 1.01252 1.73134 1.17901 1.25546 0.93361 1.46926 1.44783 1.09089 1.11827 1.21188 0.75452 0.87414 0.79302 1.93184 1.37884 1.94175 1.89578 1.93210 1.70020 1.94962 1.56115 1.21873 0.93995 0.99095 0.84844 1.21717 0.94152 1.00936 0.95301 0.90678 1.20719 0.96881 0.94006 0.85281 1.42434 1.65430 1.29129 1.00822 1.19234 1.27943 1.06317 0.83775 0.91204 1.24757 1.00847 0.97497 0.97795 1.69691 1.42382 1.17201 1.28381 0.86151 0.77628 0.77698 0.84900 1.20604 1.21901 1.21925 0.93193 0.91581 0.92786 0.91523 0.90648 0.90942 0.88653 0.81010 0.78714 0.81508 0.87621 0.91076 0.95453 0.96361 0.78096 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.82 37.16 0.33 -1.38 16 2 C -0.08 -1.01 2.23 -90.57 -0.20 -1.21 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.26 5.36 -26.61 -0.14 -1.40 16 5 C 0.09 0.86 5.17 -3.71 -0.02 0.84 16 6 N -0.59 -8.38 2.98 -173.91 -0.52 -8.90 16 7 C 0.58 9.35 7.23 -12.64 -0.09 9.25 16 8 O -0.51 -10.52 14.11 5.26 0.07 -10.45 16 9 C 0.00 -0.04 6.29 -82.06 -0.52 -0.55 16 10 C -0.19 -1.74 8.59 -38.99 -0.34 -2.07 16 11 C 0.02 0.19 12.03 -17.43 -0.21 -0.02 16 12 N -0.27 -2.92 11.90 30.59 0.36 -2.56 16 13 N -0.33 -4.13 3.62 -62.39 -0.23 -4.36 16 14 C 0.50 5.94 5.69 59.85 0.34 6.28 16 15 F -0.17 -2.40 16.48 2.25 0.04 -2.36 16 16 F -0.16 -2.39 16.34 2.25 0.04 -2.36 16 17 C 0.12 2.05 5.54 -3.56 -0.02 2.03 16 18 C -0.10 -1.64 1.92 -90.49 -0.17 -1.81 16 19 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 20 C 0.16 3.15 5.41 -4.04 -0.02 3.13 16 21 N -0.73 -18.94 5.38 -59.91 -0.32 -19.26 16 22 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 23 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -29.17 13.06 55.49 0.72 -28.44 16 26 Si 0.90 22.94 29.55 -169.99 -5.02 17.91 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.84 6.29 -51.93 -0.33 0.51 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.79 4.32 -51.93 -0.22 0.57 16 37 H 0.17 1.09 6.50 -52.49 -0.34 0.75 16 38 H 0.20 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.17 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.11 2.23 6.23 -51.93 -0.32 1.90 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.03 0.55 6.14 -51.93 -0.32 0.23 16 43 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 44 H 0.38 10.72 6.90 -40.82 -0.28 10.44 16 45 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -36.28 366.52 -6.65 -42.94 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.01 Total: 6.74 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.31 Total: 5.58 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.02 Total: -63.52 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.07 Total: -4.72 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.28 -6.65 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132847021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.232 kcal (2) G-P(sol) polarization free energy of solvation -36.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds