Wall clock time and date at job start Wed Apr 1 2020 00:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.49913 * 2 1 4 4 C 1.53042 * 109.50093 * 239.93171 * 2 1 3 5 5 C 1.53032 * 109.53965 * 301.38623 * 4 2 1 6 6 C 1.53189 * 109.31339 * 298.63255 * 5 4 2 7 7 N 1.46930 * 108.77857 * 54.63275 * 6 5 4 8 8 C 1.34777 * 120.63274 * 126.36606 * 7 6 5 9 9 O 1.21657 * 120.00109 * 190.46654 * 8 7 6 10 10 C 1.46891 * 119.99516 * 10.47078 * 8 7 6 11 11 C 1.36120 * 125.43730 * 25.78601 * 10 8 7 12 12 C 1.41710 * 107.74608 * 179.97438 * 11 10 8 13 13 C 1.40023 * 133.34605 * 179.97438 * 12 11 10 14 14 C 1.36588 * 119.82388 * 179.31718 * 13 12 11 15 15 C 1.38854 * 120.59861 * 0.56540 * 14 13 12 16 16 C 1.37839 * 120.63652 * 359.65457 * 15 14 13 17 17 C 1.39087 * 119.81276 * 359.97438 * 16 15 14 18 18 N 1.37842 * 133.16304 * 179.97438 * 17 16 15 19 19 C 1.36891 * 125.61957 * 0.02562 * 18 17 16 20 20 H 1.07998 * 119.99688 * 144.71842 * 19 18 17 21 21 C 1.39004 * 120.00171 * 324.72228 * 19 18 17 22 22 N 1.31349 * 120.00335 * 334.06604 * 21 19 18 23 23 Si 1.86805 * 120.00200 * 154.06457 * 21 19 18 24 24 H 1.48501 * 109.47051 * 59.99778 * 23 21 19 25 25 H 1.48500 * 109.47064 * 299.99925 * 23 21 19 26 26 H 1.48503 * 109.46999 * 180.02562 * 23 21 19 27 27 C 1.46922 * 118.73811 * 306.64921 * 7 6 5 28 28 H 1.08997 * 109.58534 * 293.56412 * 27 7 6 29 29 C 1.53003 * 109.58738 * 173.13660 * 27 7 6 30 30 O 1.42899 * 109.46855 * 69.43620 * 29 27 7 31 31 H 1.09008 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47742 * 300.06491 * 1 2 3 33 33 H 1.09008 * 109.47135 * 60.06535 * 1 2 3 34 34 H 1.08997 * 109.46083 * 181.36064 * 4 2 1 35 35 H 1.09006 * 109.45457 * 61.40762 * 4 2 1 36 36 H 1.09005 * 109.49925 * 178.68331 * 5 4 2 37 37 H 1.09001 * 109.50098 * 58.58285 * 5 4 2 38 38 H 1.09004 * 109.59080 * 294.84845 * 6 5 4 39 39 H 1.09003 * 109.59265 * 174.42298 * 6 5 4 40 40 H 1.07991 * 126.12855 * 359.97438 * 11 10 8 41 41 H 1.07995 * 120.09064 * 359.97438 * 13 12 11 42 42 H 1.07996 * 119.69701 * 180.19818 * 14 13 12 43 43 H 1.08006 * 119.68258 * 179.63480 * 15 14 13 44 44 H 1.08008 * 120.09628 * 179.97438 * 16 15 14 45 45 H 0.97005 * 119.99188 * 358.34609 * 22 21 19 46 46 H 1.09002 * 109.46712 * 189.43182 * 29 27 7 47 47 H 1.08995 * 109.47201 * 309.43249 * 29 27 7 48 48 H 0.96697 * 113.99864 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 1.5037 -2.1556 -1.2662 6 6 2.0152 -2.9038 -0.0311 7 7 1.6528 -2.1382 1.1694 8 6 0.9756 -2.7222 2.1778 9 8 0.5157 -2.0423 3.0758 10 6 0.7931 -4.1797 2.1926 11 6 1.6137 -5.0840 1.5914 12 6 1.0895 -6.3765 1.8421 13 6 1.4989 -7.6662 1.4818 14 6 0.7755 -8.7487 1.8948 15 6 -0.3710 -8.5824 2.6603 16 6 -0.7963 -7.3226 3.0236 17 6 -0.0720 -6.2054 2.6214 18 7 -0.2388 -4.8517 2.8203 19 6 -1.2558 -4.2691 3.5276 20 1 -1.0678 -3.3794 4.1102 21 6 -2.5305 -4.8228 3.4960 22 7 -2.9094 -5.5405 2.4632 23 14 -3.7046 -4.5463 4.9224 24 1 -3.9496 -3.0909 5.0868 25 1 -3.1074 -5.0915 6.1679 26 1 -4.9899 -5.2371 4.6466 27 6 2.0370 -0.7222 1.2470 28 1 3.1227 -0.6405 1.2972 29 6 1.4139 -0.0893 2.4929 30 8 2.0415 -0.6206 3.6616 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8893 33 1 -0.3634 0.5129 -0.8906 34 1 3.1305 -0.7436 -1.2357 35 1 1.6984 -0.1955 -2.1389 36 1 1.8488 -2.6625 -2.1674 37 1 0.4139 -2.1359 -1.2540 38 1 3.0992 -3.0036 -0.0873 39 1 1.5571 -3.8919 0.0134 40 1 2.5047 -4.8572 1.0248 41 1 2.3901 -7.8053 0.8879 42 1 1.0949 -9.7427 1.6184 43 1 -0.9350 -9.4484 2.9739 44 1 -1.6896 -7.2033 3.6189 45 1 -2.3084 -5.6641 1.7119 46 1 1.5579 0.9908 2.4623 47 1 0.3475 -0.3130 2.5195 48 1 1.6953 -0.2633 4.4908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364458016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:25 Heat of formation + Delta-G solvation = -4.531741 kcal Electronic energy + Delta-G solvation = -31977.191354 eV Core-core repulsion = 27998.196931 eV Total energy + Delta-G solvation = -3978.994423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.89996 -39.89414 -37.21830 -36.16627 -35.64159 -34.13167 -33.15931 -31.90065 -30.52262 -29.04300 -28.48756 -27.05791 -26.27607 -24.64638 -24.14921 -22.80699 -21.73297 -20.91428 -20.10612 -19.56929 -18.55931 -17.87627 -16.87013 -16.24590 -15.84942 -15.62534 -15.36758 -15.01370 -14.57521 -14.30484 -14.16017 -14.07081 -13.91086 -13.54968 -13.27485 -13.05946 -13.00602 -12.87618 -12.60700 -12.31468 -12.11166 -11.93846 -11.79541 -11.71654 -11.25447 -11.15450 -10.99125 -10.85192 -10.81523 -10.52538 -10.41420 -10.31234 -10.29029 -10.20877 -9.85218 -9.56130 -9.02324 -8.75704 -8.44013 -8.09343 -7.47339 -6.98534 -6.74556 -4.40161 1.80659 2.67069 3.07273 3.13811 3.21537 3.27116 3.36837 3.93354 4.14765 4.41697 4.58633 4.66460 4.77742 4.81591 4.96138 5.03730 5.23049 5.26895 5.44769 5.47068 5.54323 5.61059 5.67874 5.70553 5.76598 5.81781 5.88936 5.89249 5.91692 6.04481 6.08059 6.12642 6.17556 6.22624 6.27739 6.33820 6.45904 6.49843 6.60727 6.80337 6.91546 7.02126 7.05399 7.39146 7.47298 7.54300 7.78177 7.83108 7.87339 8.03930 8.13473 8.24465 8.81934 8.99197 9.18359 10.11412 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.005038 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.534608 B = 5556.836809 C = 7004.969913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.139 4.139 6 C 0.092 3.908 7 N -0.604 5.604 8 C 0.598 3.402 9 O -0.512 6.512 10 C -0.024 4.024 11 C -0.219 4.219 12 C -0.119 4.119 13 C -0.090 4.090 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.071 4.071 17 C 0.041 3.959 18 N -0.231 5.231 19 C -0.415 4.415 20 H 0.119 0.881 21 C 0.022 3.978 22 N -0.819 5.819 23 Si 1.079 2.921 24 H -0.276 1.276 25 H -0.275 1.275 26 H -0.273 1.273 27 C 0.160 3.840 28 H 0.069 0.931 29 C 0.082 3.918 30 O -0.556 6.556 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.115 0.885 40 H 0.132 0.868 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.289 0.711 46 H 0.024 0.976 47 H 0.082 0.918 48 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.811 6.963 -5.798 11.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.149 4.149 5 C -0.177 4.177 6 C -0.031 4.031 7 N -0.340 5.340 8 C 0.389 3.611 9 O -0.388 6.388 10 C -0.141 4.141 11 C -0.246 4.246 12 C -0.124 4.124 13 C -0.109 4.109 14 C -0.174 4.174 15 C -0.168 4.168 16 C -0.091 4.091 17 C -0.072 4.072 18 N 0.109 4.891 19 C -0.544 4.544 20 H 0.136 0.864 21 C -0.194 4.194 22 N -0.445 5.445 23 Si 0.902 3.098 24 H -0.202 1.202 25 H -0.200 1.200 26 H -0.197 1.197 27 C 0.056 3.944 28 H 0.087 0.913 29 C 0.004 3.996 30 O -0.361 6.361 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.150 0.850 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.137 0.863 45 H 0.101 0.899 46 H 0.042 0.958 47 H 0.100 0.900 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.073 6.823 -5.042 9.885 hybrid contribution 1.367 0.698 -0.415 1.590 sum 6.441 7.521 -5.457 11.306 Atomic orbital electron populations 1.21905 0.94522 1.02882 1.01311 1.21379 0.96992 0.98993 0.94512 0.90394 1.21525 1.00321 0.95978 0.97079 1.22005 1.01935 0.95690 0.98098 1.22285 0.99808 0.97467 0.83504 1.47482 1.58486 1.09756 1.18263 1.17035 0.77258 0.85798 0.81051 1.90642 1.47624 1.63383 1.37103 1.19704 0.97919 0.91599 1.04927 1.20475 1.03203 0.90920 1.09954 1.17924 0.97161 0.93181 1.04137 1.20058 0.99160 0.90966 1.00708 1.20306 0.97384 0.97319 1.02372 1.20539 0.98208 0.95655 1.02432 1.20282 0.98680 0.90097 1.00012 1.18303 0.98600 0.84196 1.06141 1.40115 1.16165 1.02530 1.30289 1.21059 0.89379 1.15785 1.28156 0.86391 1.26905 0.97040 0.94106 1.01343 1.70666 1.37864 1.31893 1.04046 0.83367 0.75263 0.77463 0.73706 1.20164 1.20032 1.19731 1.21002 0.98568 0.80841 0.93961 0.91258 1.22329 0.99503 0.93006 0.84722 1.86459 1.63717 1.70359 1.15564 0.91736 0.92489 0.92948 0.91903 0.91790 0.90968 0.91077 0.92158 0.86755 0.85035 0.87773 0.87813 0.87429 0.86333 0.89942 0.95838 0.90008 0.78266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.20 37.15 0.30 -1.64 16 2 C -0.10 -1.18 2.79 -90.72 -0.25 -1.43 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.17 5.43 -26.69 -0.14 -1.32 16 5 C -0.14 -1.69 5.74 -26.62 -0.15 -1.84 16 6 C 0.09 1.35 4.96 -3.71 -0.02 1.33 16 7 N -0.60 -10.46 2.42 -166.92 -0.40 -10.87 16 8 C 0.60 13.14 7.14 -12.76 -0.09 13.05 16 9 O -0.51 -12.06 9.56 -19.72 -0.19 -12.25 16 10 C -0.02 -0.56 6.27 -82.25 -0.52 -1.08 16 11 C -0.22 -4.74 8.39 -39.02 -0.33 -5.07 16 12 C -0.12 -2.74 6.16 -106.89 -0.66 -3.40 16 13 C -0.09 -1.80 10.06 -39.51 -0.40 -2.19 16 14 C -0.15 -2.96 9.97 -39.95 -0.40 -3.35 16 15 C -0.15 -3.05 10.02 -39.50 -0.40 -3.44 16 16 C -0.07 -1.70 8.45 -39.41 -0.33 -2.04 16 17 C 0.04 1.05 5.52 -83.83 -0.46 0.58 16 18 N -0.23 -6.09 2.65 -56.08 -0.15 -6.24 16 19 C -0.42 -11.23 9.12 -15.01 -0.14 -11.36 16 20 H 0.12 3.30 6.68 -52.49 -0.35 2.95 16 21 C 0.02 0.55 4.11 -17.47 -0.07 0.48 16 22 N -0.82 -22.01 11.87 55.50 0.66 -21.35 16 23 Si 1.08 22.54 29.99 -169.99 -5.10 17.44 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 C 0.16 2.38 2.85 -67.82 -0.19 2.18 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 C 0.08 1.30 4.77 37.16 0.18 1.48 16 30 O -0.56 -9.92 11.09 -60.17 -0.67 -10.59 16 31 H 0.06 1.02 5.97 -51.92 -0.31 0.71 16 32 H 0.06 0.76 6.54 -51.93 -0.34 0.42 16 33 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 38 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 39 H 0.11 1.90 4.40 -51.93 -0.23 1.68 16 40 H 0.13 2.41 6.19 -52.49 -0.32 2.09 16 41 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 44 H 0.12 2.96 6.37 -52.48 -0.33 2.62 16 45 H 0.29 8.14 6.96 -40.82 -0.28 7.85 16 46 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 47 H 0.08 1.50 4.91 -51.93 -0.25 1.24 16 48 H 0.37 5.41 9.12 45.56 0.42 5.83 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -30.58 361.61 -10.25 -40.84 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -5.79 Total: 16.62 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -4.07 Total: -19.05 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.11 Total: -38.45 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.86 Total: -22.84 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.10 Total: 17.44 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.58 -10.25 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364458016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.306 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds