Wall clock time and date at job start Wed Apr 1 2020 00:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.49913 * 2 1 4 4 C 1.53042 * 109.50093 * 239.93171 * 2 1 3 5 5 C 1.53032 * 109.53965 * 301.38623 * 4 2 1 6 6 C 1.53189 * 109.31339 * 298.63255 * 5 4 2 7 7 N 1.46930 * 108.77857 * 54.63275 * 6 5 4 8 8 C 1.34777 * 120.63274 * 126.36606 * 7 6 5 9 9 O 1.21657 * 120.00109 * 190.46654 * 8 7 6 10 10 C 1.46891 * 119.99516 * 10.47078 * 8 7 6 11 11 C 1.36120 * 125.43730 * 25.78601 * 10 8 7 12 12 C 1.41710 * 107.74608 * 179.97438 * 11 10 8 13 13 C 1.40023 * 133.34605 * 179.97438 * 12 11 10 14 14 C 1.36588 * 119.82388 * 179.31718 * 13 12 11 15 15 C 1.38854 * 120.59861 * 0.56540 * 14 13 12 16 16 C 1.37839 * 120.63652 * 359.65457 * 15 14 13 17 17 C 1.39087 * 119.81276 * 359.97438 * 16 15 14 18 18 N 1.37842 * 133.16304 * 179.97438 * 17 16 15 19 19 C 1.36891 * 125.61957 * 0.02562 * 18 17 16 20 20 H 1.07998 * 119.99688 * 144.71842 * 19 18 17 21 21 C 1.39004 * 120.00171 * 324.72228 * 19 18 17 22 22 N 1.31349 * 120.00335 * 334.06604 * 21 19 18 23 23 Si 1.86805 * 120.00200 * 154.06457 * 21 19 18 24 24 H 1.48501 * 109.47051 * 59.99778 * 23 21 19 25 25 H 1.48500 * 109.47064 * 299.99925 * 23 21 19 26 26 H 1.48503 * 109.46999 * 180.02562 * 23 21 19 27 27 C 1.46922 * 118.73811 * 306.64921 * 7 6 5 28 28 H 1.08997 * 109.58534 * 293.56412 * 27 7 6 29 29 C 1.53003 * 109.58738 * 173.13660 * 27 7 6 30 30 O 1.42899 * 109.46855 * 69.43620 * 29 27 7 31 31 H 1.09008 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47742 * 300.06491 * 1 2 3 33 33 H 1.09008 * 109.47135 * 60.06535 * 1 2 3 34 34 H 1.08997 * 109.46083 * 181.36064 * 4 2 1 35 35 H 1.09006 * 109.45457 * 61.40762 * 4 2 1 36 36 H 1.09005 * 109.49925 * 178.68331 * 5 4 2 37 37 H 1.09001 * 109.50098 * 58.58285 * 5 4 2 38 38 H 1.09004 * 109.59080 * 294.84845 * 6 5 4 39 39 H 1.09003 * 109.59265 * 174.42298 * 6 5 4 40 40 H 1.07991 * 126.12855 * 359.97438 * 11 10 8 41 41 H 1.07995 * 120.09064 * 359.97438 * 13 12 11 42 42 H 1.07996 * 119.69701 * 180.19818 * 14 13 12 43 43 H 1.08006 * 119.68258 * 179.63480 * 15 14 13 44 44 H 1.08008 * 120.09628 * 179.97438 * 16 15 14 45 45 H 0.97005 * 119.99188 * 358.34609 * 22 21 19 46 46 H 1.09002 * 109.46712 * 189.43182 * 29 27 7 47 47 H 1.08995 * 109.47201 * 309.43249 * 29 27 7 48 48 H 0.96697 * 113.99864 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 1.5037 -2.1556 -1.2662 6 6 2.0152 -2.9038 -0.0311 7 7 1.6528 -2.1382 1.1694 8 6 0.9756 -2.7222 2.1778 9 8 0.5157 -2.0423 3.0758 10 6 0.7931 -4.1797 2.1926 11 6 1.6137 -5.0840 1.5914 12 6 1.0895 -6.3765 1.8421 13 6 1.4989 -7.6662 1.4818 14 6 0.7755 -8.7487 1.8948 15 6 -0.3710 -8.5824 2.6603 16 6 -0.7963 -7.3226 3.0236 17 6 -0.0720 -6.2054 2.6214 18 7 -0.2388 -4.8517 2.8203 19 6 -1.2558 -4.2691 3.5276 20 1 -1.0678 -3.3794 4.1102 21 6 -2.5305 -4.8228 3.4960 22 7 -2.9094 -5.5405 2.4632 23 14 -3.7046 -4.5463 4.9224 24 1 -3.9496 -3.0909 5.0868 25 1 -3.1074 -5.0915 6.1679 26 1 -4.9899 -5.2371 4.6466 27 6 2.0370 -0.7222 1.2470 28 1 3.1227 -0.6405 1.2972 29 6 1.4139 -0.0893 2.4929 30 8 2.0415 -0.6206 3.6616 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8893 33 1 -0.3634 0.5129 -0.8906 34 1 3.1305 -0.7436 -1.2357 35 1 1.6984 -0.1955 -2.1389 36 1 1.8488 -2.6625 -2.1674 37 1 0.4139 -2.1359 -1.2540 38 1 3.0992 -3.0036 -0.0873 39 1 1.5571 -3.8919 0.0134 40 1 2.5047 -4.8572 1.0248 41 1 2.3901 -7.8053 0.8879 42 1 1.0949 -9.7427 1.6184 43 1 -0.9350 -9.4484 2.9739 44 1 -1.6896 -7.2033 3.6189 45 1 -2.3084 -5.6641 1.7119 46 1 1.5579 0.9908 2.4623 47 1 0.3475 -0.3130 2.5195 48 1 1.6953 -0.2633 4.4908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364458016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:21 Heat of formation + Delta-G solvation = -21.961955 kcal Electronic energy + Delta-G solvation = -31977.947185 eV Core-core repulsion = 27998.196931 eV Total energy + Delta-G solvation = -3979.750254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.53107 -41.33745 -38.64153 -37.68322 -37.14186 -35.86039 -34.57299 -33.04345 -32.29058 -30.76182 -30.03289 -28.39165 -27.40150 -26.52109 -25.48005 -24.28094 -23.03983 -22.54022 -21.74666 -21.06692 -20.06110 -19.40692 -18.16598 -17.70855 -17.42741 -17.33179 -16.73872 -16.47457 -15.98882 -15.92608 -15.58690 -15.46883 -15.27277 -14.97701 -14.77922 -14.56190 -14.48334 -14.34363 -13.95639 -13.81097 -13.70570 -13.45347 -13.12052 -12.90991 -12.81494 -12.50083 -12.39487 -12.18940 -12.16125 -12.04940 -11.98952 -11.77749 -11.55054 -11.39792 -11.28768 -10.95389 -10.85417 -10.51723 -9.99478 -9.46020 -9.38969 -8.81900 -8.49762 -6.41350 0.10616 0.98343 1.37245 1.39112 1.51686 1.69378 1.84082 2.22037 2.43467 2.79622 2.96242 3.22478 3.31209 3.59835 3.81839 3.92856 4.04069 4.14636 4.18068 4.20500 4.33865 4.35123 4.39006 4.44083 4.51386 4.55125 4.63043 4.71893 4.74015 4.74193 4.84745 4.91593 4.96246 4.97913 5.10111 5.13258 5.17036 5.19787 5.21148 5.26848 5.33302 5.47298 5.49893 5.74388 5.76993 5.78276 5.85816 6.12652 6.14476 6.46545 6.47922 6.91292 6.95402 7.26310 7.41085 8.09504 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.005038 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.534608 B = 5556.836809 C = 7004.969913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.110 0.890 4 C -0.105 4.105 5 C -0.135 4.135 6 C 0.085 3.915 7 N -0.595 5.595 8 C 0.585 3.415 9 O -0.541 6.541 10 C -0.049 4.049 11 C -0.196 4.196 12 C -0.144 4.144 13 C -0.082 4.082 14 C -0.153 4.153 15 C -0.129 4.129 16 C -0.115 4.115 17 C 0.021 3.979 18 N -0.267 5.267 19 C -0.444 4.444 20 H 0.092 0.908 21 C -0.010 4.010 22 N -0.839 5.839 23 Si 1.122 2.878 24 H -0.266 1.266 25 H -0.266 1.266 26 H -0.264 1.264 27 C 0.152 3.848 28 H 0.084 0.916 29 C 0.082 3.918 30 O -0.579 6.579 31 H 0.027 0.973 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.168 0.832 41 H 0.145 0.855 42 H 0.151 0.849 43 H 0.136 0.864 44 H 0.094 0.906 45 H 0.268 0.732 46 H 0.057 0.943 47 H 0.048 0.952 48 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.621 6.683 -8.127 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.128 0.872 4 C -0.143 4.143 5 C -0.173 4.173 6 C -0.037 4.037 7 N -0.329 5.329 8 C 0.374 3.626 9 O -0.419 6.419 10 C -0.165 4.165 11 C -0.222 4.222 12 C -0.149 4.149 13 C -0.100 4.100 14 C -0.172 4.172 15 C -0.149 4.149 16 C -0.135 4.135 17 C -0.092 4.092 18 N 0.071 4.929 19 C -0.572 4.572 20 H 0.110 0.890 21 C -0.219 4.219 22 N -0.466 5.466 23 Si 0.939 3.061 24 H -0.191 1.191 25 H -0.191 1.191 26 H -0.189 1.189 27 C 0.050 3.950 28 H 0.102 0.898 29 C 0.005 3.995 30 O -0.385 6.385 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.185 0.815 41 H 0.163 0.837 42 H 0.169 0.831 43 H 0.154 0.846 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.913 6.569 -7.405 12.673 hybrid contribution 0.707 0.700 0.199 1.015 sum 8.620 7.269 -7.206 13.382 Atomic orbital electron populations 1.21863 0.95990 1.00608 1.01828 1.21426 0.95571 1.00495 0.93638 0.87222 1.21536 1.01434 0.94368 0.96935 1.21976 1.00490 0.97190 0.97610 1.22457 1.01236 0.96518 0.83465 1.47557 1.56751 1.11027 1.17576 1.17161 0.78044 0.85310 0.82049 1.90633 1.48998 1.63639 1.38679 1.20441 0.97499 0.93327 1.05233 1.20911 1.03168 0.90009 1.08120 1.18429 0.96864 0.95095 1.04507 1.20548 1.00133 0.89534 0.99794 1.20805 0.96085 0.99361 1.00920 1.21009 0.98396 0.95047 1.00493 1.20328 0.99104 0.91538 1.02566 1.18854 0.99724 0.84246 1.06405 1.40239 1.17069 1.03212 1.32388 1.20862 0.90546 1.16047 1.29700 0.89041 1.28150 0.98026 0.93232 1.02469 1.70775 1.37123 1.34430 1.04260 0.82881 0.73808 0.78003 0.71415 1.19082 1.19096 1.18859 1.21348 0.99249 0.79467 0.94936 0.89842 1.22354 0.97555 0.94877 0.84731 1.86408 1.64044 1.71366 1.16669 0.95410 0.93668 0.90721 0.89833 0.89533 0.88332 0.93531 0.89339 0.89221 0.81506 0.83681 0.83128 0.84599 0.88760 0.92172 0.92513 0.93422 0.77299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.20 71.98 0.59 -3.16 16 2 C -0.09 -1.93 2.79 -10.86 -0.03 -1.96 16 3 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.11 -1.79 5.43 30.62 0.17 -1.62 16 5 C -0.13 -2.95 5.74 30.67 0.18 -2.77 16 6 C 0.08 2.35 4.96 86.36 0.43 2.78 16 7 N -0.59 -20.57 2.42 -800.25 -1.94 -22.51 16 8 C 0.58 27.02 7.14 86.51 0.62 27.64 16 9 O -0.54 -27.45 9.56 19.63 0.19 -27.26 16 10 C -0.05 -2.44 6.27 39.91 0.25 -2.19 16 11 C -0.20 -8.46 8.39 22.63 0.19 -8.27 16 12 C -0.14 -6.57 6.16 -21.33 -0.13 -6.71 16 13 C -0.08 -3.00 10.06 22.32 0.22 -2.78 16 14 C -0.15 -5.29 9.97 22.03 0.22 -5.07 16 15 C -0.13 -5.17 10.02 22.32 0.22 -4.94 16 16 C -0.12 -5.73 8.45 22.38 0.19 -5.54 16 17 C 0.02 1.12 5.52 39.06 0.22 1.34 16 18 N -0.27 -15.05 2.65 -331.35 -0.88 -15.93 16 19 C -0.44 -26.13 9.12 84.09 0.77 -25.36 16 20 H 0.09 5.67 6.68 -2.91 -0.02 5.65 16 21 C -0.01 -0.53 4.11 84.95 0.35 -0.18 16 22 N -0.84 -48.33 11.87 21.67 0.26 -48.07 16 23 Si 1.12 48.38 29.99 68.60 2.06 50.44 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 27 C 0.15 4.32 2.85 44.84 0.13 4.45 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 C 0.08 2.63 4.77 71.98 0.34 2.97 16 30 O -0.58 -21.24 11.09 -125.13 -1.39 -22.62 16 31 H 0.03 0.91 5.97 -2.38 -0.01 0.89 16 32 H 0.04 1.24 6.54 -2.39 -0.02 1.22 16 33 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.05 1.26 6.34 -2.39 -0.02 1.25 16 38 H 0.09 1.97 8.12 -2.39 -0.02 1.95 16 39 H 0.09 2.93 4.40 -2.39 -0.01 2.92 16 40 H 0.17 5.78 6.19 -2.92 -0.02 5.76 16 41 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 42 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 43 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 44 H 0.09 5.05 6.37 -2.91 -0.02 5.03 16 45 H 0.27 16.32 6.96 -92.70 -0.65 15.68 16 46 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 47 H 0.05 1.86 4.91 -2.39 -0.01 1.85 16 48 H 0.38 11.74 9.12 -74.06 -0.68 11.06 16 Total: -1.00 -75.15 361.61 3.67 -71.48 By element: Atomic # 1 Polarization: 45.40 SS G_CDS: 0.45 Total: 45.85 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 4.92 Total: -31.38 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.56 Total: -86.51 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -1.20 Total: -49.88 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.06 Total: 50.44 kcal Total: -75.15 3.67 -71.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364458016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.518 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds