Wall clock time and date at job start Wed Apr 1 2020 02:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47401 * 2 1 4 4 N 1.46496 * 109.46889 * 120.00199 * 2 1 3 5 5 C 1.36936 * 120.00059 * 274.99456 * 4 2 1 6 6 H 1.08002 * 120.00102 * 0.02562 * 5 4 2 7 7 C 1.38819 * 120.00038 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99776 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00006 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47270 * 90.00140 * 9 7 5 11 11 H 1.48498 * 109.46981 * 210.00008 * 9 7 5 12 12 H 1.48500 * 109.47239 * 329.99847 * 9 7 5 13 13 C 1.53001 * 109.47011 * 240.00017 * 2 1 3 14 14 H 1.09008 * 109.52111 * 299.91775 * 13 2 1 15 15 C 1.53039 * 109.49774 * 59.99858 * 13 2 1 16 16 C 1.53043 * 109.52769 * 181.32433 * 15 13 2 17 17 C 1.53196 * 109.31126 * 298.61630 * 16 15 13 18 18 N 1.46927 * 108.76357 * 54.65661 * 17 16 15 19 19 C 1.34774 * 120.63404 * 126.40814 * 18 17 16 20 20 O 1.21568 * 120.00647 * 174.97984 * 19 18 17 21 21 C 1.47715 * 119.99851 * 354.97293 * 19 18 17 22 22 C 1.41503 * 126.52247 * 173.70392 * 21 19 18 23 23 C 1.35366 * 105.50597 * 180.02562 * 22 21 19 24 24 C 1.50693 * 126.38452 * 179.97438 * 23 22 21 25 25 F 1.39905 * 109.46790 * 210.00494 * 24 23 22 26 26 F 1.39905 * 109.47072 * 329.99860 * 24 23 22 27 27 N 1.35035 * 107.22592 * 0.02562 * 23 22 21 28 28 H 0.97002 * 124.88246 * 179.97438 * 27 23 22 29 29 N 1.28473 * 110.23165 * 359.72366 * 27 23 22 30 30 C 1.46934 * 118.73971 * 306.38035 * 18 17 16 31 31 H 1.09010 * 109.47210 * 299.99888 * 1 2 3 32 32 H 1.09003 * 109.46963 * 59.99655 * 1 2 3 33 33 H 1.09001 * 109.47145 * 180.02562 * 1 2 3 34 34 H 0.97001 * 120.00478 * 94.99815 * 4 2 1 35 35 H 0.96992 * 119.99836 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46435 * 301.33938 * 15 13 2 37 37 H 1.09006 * 109.45889 * 61.31422 * 15 13 2 38 38 H 1.08994 * 109.49468 * 58.57801 * 16 15 13 39 39 H 1.08995 * 109.49812 * 178.67940 * 16 15 13 40 40 H 1.08998 * 109.60101 * 294.87020 * 17 16 15 41 41 H 1.08997 * 109.58525 * 174.43086 * 17 16 15 42 42 H 1.08003 * 127.24284 * 0.02562 * 22 21 19 43 43 H 1.09001 * 109.47259 * 90.00133 * 24 23 22 44 44 H 1.08997 * 109.58563 * 293.82212 * 30 18 17 45 45 H 1.08998 * 109.58414 * 173.39619 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6123 -0.6619 3.5090 8 7 2.7376 -0.0053 4.6429 9 14 3.0577 -2.4740 3.4248 10 1 4.4905 -2.6151 3.0609 11 1 2.8186 -3.1045 4.7478 12 1 2.2182 -3.1429 2.3987 13 6 2.0400 -0.7213 -1.2493 14 1 1.6783 -1.7496 -1.2493 15 6 1.5301 -0.0003 -2.4992 16 6 2.0125 -0.7402 -3.7491 17 6 3.5441 -0.7370 -3.7802 18 7 4.0437 -1.2972 -2.5172 19 6 4.9186 -2.3223 -2.5191 20 8 5.3946 -2.7173 -1.4725 21 6 5.2991 -2.9662 -3.7929 22 6 6.2896 -3.9610 -3.9708 23 6 6.2852 -4.2434 -5.2946 24 6 7.1650 -5.2444 -5.9980 25 9 7.3938 -4.8219 -7.3120 26 9 8.3857 -5.3482 -5.3224 27 7 5.3463 -3.4600 -5.8675 28 1 5.1297 -3.4549 -6.8130 29 7 4.7776 -2.7263 -4.9794 30 6 3.5718 -0.7181 -1.2519 31 1 -0.3634 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2489 -1.6318 1.1526 35 1 3.0609 -0.4626 5.4349 36 1 0.4404 0.0205 -2.4874 37 1 1.9127 1.0203 -2.5112 38 1 1.6511 -1.7682 -3.7253 39 1 1.6296 -0.2399 -4.6385 40 1 3.9053 0.2850 -3.8949 41 1 3.8939 -1.3461 -4.6137 42 1 6.9169 -4.4021 -3.2103 43 1 6.6722 -6.2165 -6.0095 44 1 3.9353 0.3053 -1.1604 45 1 3.9399 -1.3148 -0.4173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715316821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:48 Heat of formation + Delta-G solvation = -36.076197 kcal Electronic energy + Delta-G solvation = -30353.768117 eV Core-core repulsion = 25851.469045 eV Total energy + Delta-G solvation = -4502.299072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.68403 -47.70818 -43.26875 -39.96795 -37.81398 -35.59007 -33.23101 -32.38092 -32.32807 -31.77229 -30.13070 -28.60090 -26.81972 -25.88523 -24.48655 -23.01848 -22.76821 -21.92613 -20.85782 -19.84075 -19.58441 -18.62827 -18.25857 -17.68461 -17.66012 -17.26443 -16.16158 -15.90615 -15.55147 -14.94779 -14.84554 -14.59428 -14.45256 -14.20392 -14.05764 -14.02782 -13.98781 -13.53063 -13.31253 -13.02951 -12.91979 -12.75681 -12.38596 -12.28701 -12.18007 -11.65792 -11.46788 -11.11785 -10.94403 -10.79895 -10.71172 -10.37899 -10.30266 -10.10471 -10.01863 -9.94640 -9.80500 -9.69394 -9.48691 -8.86137 -8.50031 -7.19197 -5.69431 -3.04541 1.00499 1.46317 2.04420 2.79772 3.16113 3.23684 3.45495 3.48563 3.52624 3.57678 3.81476 4.05413 4.18047 4.62227 4.68822 4.84673 4.90775 4.98251 5.03439 5.16171 5.21770 5.36853 5.54877 5.59642 5.65406 5.69423 5.81217 5.84485 5.94288 5.97122 6.10303 6.11541 6.19385 6.31292 6.34204 6.38883 6.49358 6.57074 6.71780 6.86785 7.05389 7.22856 7.48183 8.06491 8.15767 8.49819 9.28470 10.01660 10.21083 11.48948 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.002880 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.083012 B = 9719.474852 C =11282.700464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.185 3.815 3 H 0.057 0.943 4 N -0.749 5.749 5 C -0.240 4.240 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.880 3.120 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.278 1.278 13 C -0.106 4.106 14 H 0.069 0.931 15 C -0.116 4.116 16 C -0.128 4.128 17 C 0.074 3.926 18 N -0.595 5.595 19 C 0.594 3.406 20 O -0.522 6.522 21 C 0.004 3.996 22 C -0.127 4.127 23 C -0.072 4.072 24 C 0.352 3.648 25 F -0.199 7.199 26 F -0.182 7.182 27 N -0.364 5.364 28 H 0.449 0.551 29 N -0.234 5.234 30 C 0.121 3.879 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.129 0.871 42 H 0.174 0.826 43 H 0.137 0.863 44 H 0.072 0.928 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -8.535 -29.552 31.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.075 3.925 3 H 0.075 0.925 4 N -0.392 5.392 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.583 5.583 9 Si 0.710 3.290 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.126 4.126 14 H 0.087 0.913 15 C -0.154 4.154 16 C -0.167 4.167 17 C -0.049 4.049 18 N -0.327 5.327 19 C 0.379 3.621 20 O -0.396 6.396 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.199 4.199 24 C 0.296 3.704 25 F -0.180 7.180 26 F -0.163 7.163 27 N -0.079 5.079 28 H 0.295 0.705 29 N -0.071 5.071 30 C 0.000 4.000 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.192 0.808 43 H 0.154 0.846 44 H 0.090 0.910 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.772 -7.911 -29.278 30.562 hybrid contribution 0.761 -1.652 -0.108 1.822 sum 4.533 -9.564 -29.385 31.233 Atomic orbital electron populations 1.22449 0.98801 1.00806 1.00420 1.20148 0.92003 0.95583 0.84721 0.92541 1.42833 1.79764 1.09414 1.07176 1.19037 1.36811 0.95441 0.85710 0.89241 1.24639 1.01391 0.97388 0.95565 1.69702 1.52804 1.35575 1.00264 0.86612 0.78957 0.86821 0.76566 1.20691 1.21909 1.20420 1.21812 0.94550 1.00531 0.95731 0.91280 1.21644 1.01053 0.99184 0.93481 1.21855 0.95121 1.01207 0.98472 1.22642 0.94750 1.00134 0.87383 1.48013 1.43254 1.32862 1.08581 1.16933 0.79513 0.79782 0.85900 1.90867 1.53730 1.63713 1.31277 1.22183 0.99809 1.01347 0.92211 1.21612 1.00540 0.98954 0.94435 1.21822 1.00218 1.02858 0.95005 1.19690 0.80694 0.96548 0.73420 1.93032 1.95289 1.92157 1.37536 1.93079 1.46202 1.96979 1.80073 1.43383 1.26100 1.27417 1.10996 0.70522 1.73332 1.20284 1.14848 0.98597 1.21769 0.93943 0.99380 0.84895 0.92397 0.93938 0.93747 0.80613 0.93149 0.91153 0.91685 0.91843 0.91096 0.91855 0.85395 0.80829 0.84607 0.90976 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.14 37.16 0.34 -2.50 16 2 C 0.19 3.48 2.47 -67.93 -0.17 3.31 16 3 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 4 N -0.75 -17.79 4.33 -53.43 -0.23 -18.02 16 5 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 8 N -0.94 -29.93 13.97 55.49 0.78 -29.16 16 9 Si 0.88 23.20 27.74 -169.99 -4.71 18.49 16 10 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 12 H -0.28 -6.99 6.52 56.52 0.37 -6.62 16 13 C -0.11 -1.65 1.97 -90.50 -0.18 -1.83 16 14 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 15 C -0.12 -1.38 4.85 -26.69 -0.13 -1.51 16 16 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 17 C 0.07 0.83 6.33 -3.71 -0.02 0.81 16 18 N -0.59 -8.71 2.97 -173.93 -0.52 -9.23 16 19 C 0.59 9.48 7.70 -12.39 -0.10 9.38 16 20 O -0.52 -10.35 16.36 5.31 0.09 -10.26 16 21 C 0.00 0.05 6.88 -82.76 -0.57 -0.52 16 22 C -0.13 -1.32 10.42 -39.36 -0.41 -1.73 16 23 C -0.07 -0.53 6.84 -82.21 -0.56 -1.09 16 24 C 0.35 1.73 5.83 36.00 0.21 1.94 16 25 F -0.20 -1.12 17.30 2.25 0.04 -1.08 16 26 F -0.18 -1.36 17.06 2.25 0.04 -1.32 16 27 N -0.36 -2.40 6.79 33.50 0.23 -2.17 16 28 H 0.45 1.34 8.96 -190.44 -1.71 -0.36 16 29 N -0.23 -2.26 8.62 33.42 0.29 -1.98 16 30 C 0.12 2.04 5.46 -3.71 -0.02 2.02 16 31 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 32 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.36 8.72 5.48 -40.82 -0.22 8.50 16 35 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 36 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.13 1.31 3.73 -111.89 -0.42 0.89 16 42 H 0.17 1.74 8.06 -52.48 -0.42 1.32 16 43 H 0.14 0.17 8.14 -51.93 -0.42 -0.26 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.10 2.06 6.55 -51.93 -0.34 1.72 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -35.71 369.02 -8.06 -43.77 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.59 Total: 5.48 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.02 Total: -0.09 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.54 Total: -60.55 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.08 Total: -2.40 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.71 Total: 18.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.71 -8.06 -43.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715316821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.694 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds