Wall clock time and date at job start Wed Apr 1 2020 02:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47401 * 2 1 4 4 N 1.46496 * 109.46889 * 120.00199 * 2 1 3 5 5 C 1.36936 * 120.00059 * 274.99456 * 4 2 1 6 6 H 1.08002 * 120.00102 * 0.02562 * 5 4 2 7 7 C 1.38819 * 120.00038 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99776 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00006 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47270 * 90.00140 * 9 7 5 11 11 H 1.48498 * 109.46981 * 210.00008 * 9 7 5 12 12 H 1.48500 * 109.47239 * 329.99847 * 9 7 5 13 13 C 1.53001 * 109.47011 * 240.00017 * 2 1 3 14 14 H 1.09008 * 109.52111 * 299.91775 * 13 2 1 15 15 C 1.53039 * 109.49774 * 59.99858 * 13 2 1 16 16 C 1.53043 * 109.52769 * 181.32433 * 15 13 2 17 17 C 1.53196 * 109.31126 * 298.61630 * 16 15 13 18 18 N 1.46927 * 108.76357 * 54.65661 * 17 16 15 19 19 C 1.34774 * 120.63404 * 126.40814 * 18 17 16 20 20 O 1.21568 * 120.00647 * 174.97984 * 19 18 17 21 21 C 1.47715 * 119.99851 * 354.97293 * 19 18 17 22 22 C 1.41503 * 126.52247 * 173.70392 * 21 19 18 23 23 C 1.35366 * 105.50597 * 180.02562 * 22 21 19 24 24 C 1.50693 * 126.38452 * 179.97438 * 23 22 21 25 25 F 1.39905 * 109.46790 * 210.00494 * 24 23 22 26 26 F 1.39905 * 109.47072 * 329.99860 * 24 23 22 27 27 N 1.35035 * 107.22592 * 0.02562 * 23 22 21 28 28 H 0.97002 * 124.88246 * 179.97438 * 27 23 22 29 29 N 1.28473 * 110.23165 * 359.72366 * 27 23 22 30 30 C 1.46934 * 118.73971 * 306.38035 * 18 17 16 31 31 H 1.09010 * 109.47210 * 299.99888 * 1 2 3 32 32 H 1.09003 * 109.46963 * 59.99655 * 1 2 3 33 33 H 1.09001 * 109.47145 * 180.02562 * 1 2 3 34 34 H 0.97001 * 120.00478 * 94.99815 * 4 2 1 35 35 H 0.96992 * 119.99836 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46435 * 301.33938 * 15 13 2 37 37 H 1.09006 * 109.45889 * 61.31422 * 15 13 2 38 38 H 1.08994 * 109.49468 * 58.57801 * 16 15 13 39 39 H 1.08995 * 109.49812 * 178.67940 * 16 15 13 40 40 H 1.08998 * 109.60101 * 294.87020 * 17 16 15 41 41 H 1.08997 * 109.58525 * 174.43086 * 17 16 15 42 42 H 1.08003 * 127.24284 * 0.02562 * 22 21 19 43 43 H 1.09001 * 109.47259 * 90.00133 * 24 23 22 44 44 H 1.08997 * 109.58563 * 293.82212 * 30 18 17 45 45 H 1.08998 * 109.58414 * 173.39619 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6123 -0.6619 3.5090 8 7 2.7376 -0.0053 4.6429 9 14 3.0577 -2.4740 3.4248 10 1 4.4905 -2.6151 3.0609 11 1 2.8186 -3.1045 4.7478 12 1 2.2182 -3.1429 2.3987 13 6 2.0400 -0.7213 -1.2493 14 1 1.6783 -1.7496 -1.2493 15 6 1.5301 -0.0003 -2.4992 16 6 2.0125 -0.7402 -3.7491 17 6 3.5441 -0.7370 -3.7802 18 7 4.0437 -1.2972 -2.5172 19 6 4.9186 -2.3223 -2.5191 20 8 5.3946 -2.7173 -1.4725 21 6 5.2991 -2.9662 -3.7929 22 6 6.2896 -3.9610 -3.9708 23 6 6.2852 -4.2434 -5.2946 24 6 7.1650 -5.2444 -5.9980 25 9 7.3938 -4.8219 -7.3120 26 9 8.3857 -5.3482 -5.3224 27 7 5.3463 -3.4600 -5.8675 28 1 5.1297 -3.4549 -6.8130 29 7 4.7776 -2.7263 -4.9794 30 6 3.5718 -0.7181 -1.2519 31 1 -0.3634 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2489 -1.6318 1.1526 35 1 3.0609 -0.4626 5.4349 36 1 0.4404 0.0205 -2.4874 37 1 1.9127 1.0203 -2.5112 38 1 1.6511 -1.7682 -3.7253 39 1 1.6296 -0.2399 -4.6385 40 1 3.9053 0.2850 -3.8949 41 1 3.8939 -1.3461 -4.6137 42 1 6.9169 -4.4021 -3.2103 43 1 6.6722 -6.2165 -6.0095 44 1 3.9353 0.3053 -1.1604 45 1 3.9399 -1.3148 -0.4173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715316821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:48 Heat of formation + Delta-G solvation = -61.236595 kcal Electronic energy + Delta-G solvation = -30354.859153 eV Core-core repulsion = 25851.469045 eV Total energy + Delta-G solvation = -4503.390109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.12105 -48.15763 -44.01074 -41.15014 -39.14052 -37.11210 -34.77977 -33.51852 -33.10562 -33.04341 -31.71974 -30.10588 -27.35390 -26.99236 -26.00488 -24.55677 -23.86713 -22.60671 -22.12253 -21.29254 -20.40158 -19.62325 -19.47336 -18.65916 -18.35221 -18.13244 -17.04420 -16.97331 -16.74161 -16.46446 -16.07444 -15.84791 -15.56396 -15.16073 -15.01915 -14.93498 -14.82474 -14.48596 -14.42327 -14.31357 -14.21191 -14.03014 -13.93856 -13.58614 -13.23378 -12.91426 -12.74317 -12.58926 -12.44975 -12.28672 -12.18991 -11.85548 -11.75571 -11.52432 -11.48496 -11.29511 -11.02886 -10.87351 -10.70735 -10.49990 -9.68616 -9.29325 -8.02775 -5.33189 0.21102 0.63625 1.33076 1.40017 1.41603 1.42505 1.86667 2.13541 2.46330 2.56177 3.03429 3.10471 3.30081 3.43437 3.52128 3.79718 3.83362 3.88971 3.96293 4.10338 4.15829 4.17575 4.32082 4.41049 4.49727 4.58794 4.72187 4.74894 4.81865 4.89509 4.92736 5.01186 5.03434 5.09989 5.16112 5.26630 5.35405 5.49238 5.51277 5.61805 5.78946 5.79707 6.22861 6.27878 6.57926 6.99091 7.08672 7.86917 8.03270 9.19184 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.002880 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.083012 B = 9719.474852 C =11282.700464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.177 3.823 3 H 0.049 0.951 4 N -0.754 5.754 5 C -0.215 4.215 6 H 0.064 0.936 7 C -0.060 4.060 8 N -0.983 5.983 9 Si 0.942 3.058 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.259 1.259 13 C -0.092 4.092 14 H 0.061 0.939 15 C -0.111 4.111 16 C -0.120 4.120 17 C 0.069 3.931 18 N -0.593 5.593 19 C 0.586 3.414 20 O -0.577 6.577 21 C -0.024 4.024 22 C -0.151 4.151 23 C -0.050 4.050 24 C 0.355 3.645 25 F -0.200 7.200 26 F -0.198 7.198 27 N -0.338 5.338 28 H 0.468 0.532 29 N -0.227 5.227 30 C 0.124 3.876 31 H 0.032 0.968 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.359 0.641 35 H 0.256 0.744 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.142 0.858 42 H 0.167 0.833 43 H 0.185 0.815 44 H 0.068 0.932 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 -9.704 -34.243 35.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.069 3.931 3 H 0.068 0.932 4 N -0.397 5.397 5 C -0.347 4.347 6 H 0.082 0.918 7 C -0.251 4.251 8 N -0.634 5.634 9 Si 0.771 3.229 10 H -0.217 1.217 11 H -0.219 1.219 12 H -0.184 1.184 13 C -0.112 4.112 14 H 0.080 0.920 15 C -0.148 4.148 16 C -0.158 4.158 17 C -0.053 4.053 18 N -0.324 5.324 19 C 0.373 3.627 20 O -0.455 6.455 21 C -0.182 4.182 22 C -0.179 4.179 23 C -0.178 4.178 24 C 0.300 3.700 25 F -0.181 7.181 26 F -0.179 7.179 27 N -0.056 5.056 28 H 0.319 0.681 29 N -0.065 5.065 30 C 0.001 3.999 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.192 0.808 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.092 0.908 41 H 0.159 0.841 42 H 0.185 0.815 43 H 0.201 0.799 44 H 0.087 0.913 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.746 -9.062 -34.083 35.374 hybrid contribution 1.078 -1.193 1.179 1.994 sum 3.824 -10.255 -32.904 34.677 Atomic orbital electron populations 1.22304 0.96809 1.01133 1.01197 1.20449 0.93285 0.95154 0.84223 0.93245 1.42921 1.80001 1.09353 1.07393 1.19035 1.34025 0.94458 0.87137 0.91830 1.25309 1.02888 1.01414 0.95521 1.69847 1.55253 1.37277 1.01062 0.85604 0.78180 0.82367 0.76773 1.21710 1.21900 1.18437 1.21657 0.93351 1.00187 0.96031 0.92017 1.21647 1.01931 0.99238 0.92031 1.21835 0.93948 1.01192 0.98817 1.22949 0.95714 1.00740 0.85868 1.48100 1.42829 1.32483 1.08968 1.17455 0.78925 0.79674 0.86646 1.90821 1.55767 1.65403 1.33540 1.21665 1.01843 1.02980 0.91681 1.21660 1.00819 0.99401 0.95993 1.22043 0.99593 1.02191 0.93945 1.20162 0.79783 0.97479 0.72586 1.93034 1.95250 1.92344 1.37487 1.93055 1.47336 1.96997 1.80511 1.43434 1.24835 1.25782 1.11552 0.68137 1.73159 1.20198 1.15147 0.97963 1.21517 0.94956 0.98323 0.85071 0.94917 0.89849 0.93606 0.80810 0.93496 0.89535 0.90860 0.92188 0.87533 0.90792 0.84134 0.81522 0.79855 0.91327 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 9.14 71.98 0.66 -4.42 16 2 C 0.18 6.57 2.47 44.99 0.11 6.68 16 3 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 4 N -0.75 -36.42 4.33 -322.95 -1.40 -37.81 16 5 C -0.22 -12.58 10.41 84.04 0.87 -11.71 16 6 H 0.06 4.00 8.06 -2.91 -0.02 3.97 16 7 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 8 N -0.98 -65.23 13.97 21.65 0.30 -64.93 16 9 Si 0.94 49.65 27.74 68.60 1.90 51.55 16 10 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 11 H -0.29 -15.30 7.11 99.48 0.71 -14.60 16 12 H -0.26 -12.68 6.52 99.48 0.65 -12.03 16 13 C -0.09 -2.78 1.97 -10.72 -0.02 -2.80 16 14 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 15 C -0.11 -2.28 4.85 30.62 0.15 -2.13 16 16 C -0.12 -1.98 6.08 30.67 0.19 -1.80 16 17 C 0.07 1.37 6.33 86.36 0.55 1.91 16 18 N -0.59 -17.25 2.97 -822.46 -2.44 -19.70 16 19 C 0.59 19.22 7.70 86.75 0.67 19.89 16 20 O -0.58 -24.36 16.36 -3.93 -0.06 -24.43 16 21 C -0.02 -0.58 6.88 42.46 0.29 -0.29 16 22 C -0.15 -3.03 10.42 22.41 0.23 -2.79 16 23 C -0.05 -0.59 6.84 41.40 0.28 -0.31 16 24 C 0.35 2.28 5.83 71.23 0.42 2.69 16 25 F -0.20 -1.54 17.30 44.97 0.78 -0.76 16 26 F -0.20 -2.54 17.06 44.97 0.77 -1.77 16 27 N -0.34 -3.31 6.79 -47.93 -0.33 -3.64 16 28 H 0.47 0.79 8.96 -219.99 -1.97 -1.19 16 29 N -0.23 -3.82 8.62 -48.17 -0.42 -4.23 16 30 C 0.12 4.26 5.46 86.36 0.47 4.73 16 31 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.08 2.05 6.40 -2.39 -0.02 2.03 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.36 17.59 5.48 -92.71 -0.51 17.08 16 35 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 36 H 0.09 1.55 6.36 -2.39 -0.02 1.54 16 37 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.14 2.46 3.73 -79.96 -0.30 2.16 16 42 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 43 H 0.18 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.06 2.49 6.55 -2.39 -0.02 2.48 16 Total: -1.00 -83.17 369.02 2.66 -80.51 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -1.77 Total: 18.78 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.33 Total: 6.43 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -4.28 Total: -130.31 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.43 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 1.54 Total: -2.53 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 1.90 Total: 51.55 kcal Total: -83.17 2.66 -80.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715316821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.272 kcal (2) G-P(sol) polarization free energy of solvation -83.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds