Wall clock time and date at job start Wed Apr 1 2020 00:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47290 * 2 1 4 4 C 1.50704 * 109.46780 * 119.99983 * 2 1 3 5 5 H 1.07999 * 119.99710 * 120.00306 * 4 2 1 6 6 C 1.37876 * 119.99937 * 299.99653 * 4 2 1 7 7 N 1.31517 * 119.99976 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 119.99958 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47289 * 90.00213 * 8 6 4 10 10 H 1.48505 * 109.47319 * 209.99523 * 8 6 4 11 11 H 1.48495 * 109.47389 * 330.00145 * 8 6 4 12 12 N 1.46504 * 109.47004 * 239.99678 * 2 1 3 13 13 C 1.34771 * 119.99814 * 85.00374 * 12 2 1 14 14 O 1.21283 * 119.99955 * 359.97438 * 13 12 2 15 15 C 1.50702 * 120.00025 * 179.97438 * 13 12 2 16 16 H 1.08993 * 110.85769 * 297.66557 * 15 13 12 17 17 C 1.54636 * 110.96610 * 61.45686 * 15 13 12 18 18 C 1.51282 * 104.19669 * 93.31924 * 17 15 13 19 19 O 1.21281 * 124.93771 * 196.26880 * 18 17 15 20 20 N 1.34415 * 110.11527 * 16.25100 * 18 17 15 21 21 C 1.39925 * 124.34811 * 180.40760 * 20 18 17 22 22 C 1.38895 * 120.10547 * 174.28994 * 21 20 18 23 23 C 1.37971 * 119.85931 * 180.02562 * 22 21 20 24 24 C 1.38570 * 120.30974 * 359.97276 * 23 22 21 25 25 C 1.38279 * 119.96306 * 0.03056 * 24 23 22 26 26 C 1.38381 * 119.91899 * 359.97438 * 25 24 23 27 27 C 1.51385 * 109.74874 * 180.02562 * 25 24 23 28 28 C 1.54337 * 105.26069 * 342.75500 * 27 25 24 29 29 C 1.51398 * 130.29979 * 180.02562 * 24 23 22 30 30 C 1.46767 * 111.30263 * 0.67183 * 20 18 17 31 31 H 1.08996 * 109.46994 * 300.00122 * 1 2 3 32 32 H 1.09001 * 109.46793 * 60.00151 * 1 2 3 33 33 H 1.09001 * 109.47531 * 180.02562 * 1 2 3 34 34 H 0.96999 * 119.99960 * 180.02562 * 7 6 4 35 35 H 0.96999 * 120.00026 * 264.99672 * 12 2 1 36 36 H 1.08997 * 110.48252 * 334.64172 * 17 15 13 37 37 H 1.09000 * 110.48203 * 212.00327 * 17 15 13 38 38 H 1.07994 * 120.07252 * 359.97438 * 22 21 20 39 39 H 1.08004 * 119.84445 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.91702 * 179.97438 * 26 25 24 41 41 H 1.08994 * 110.30615 * 101.73508 * 27 25 24 42 42 H 1.09004 * 110.29892 * 223.78791 * 27 25 24 43 43 H 1.08997 * 110.81933 * 144.64970 * 28 27 25 44 44 H 1.08994 * 110.82520 * 268.20046 * 28 27 25 45 45 H 1.08995 * 110.30145 * 316.11839 * 29 24 23 46 46 H 1.09000 * 110.29817 * 78.16910 * 29 24 23 47 47 H 1.09010 * 110.24457 * 101.71860 * 30 20 18 48 48 H 1.09001 * 110.24437 * 223.71463 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6248 1.2791 2.6540 9 1 -0.8029 0.8728 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7287 -3.5874 16 1 3.6655 -1.0945 -3.4365 17 6 1.7002 -1.8814 -3.9878 18 6 0.7597 -1.2549 -4.9937 19 8 -0.2998 -1.7301 -5.3436 20 7 1.2691 -0.0949 -5.4427 21 6 0.6394 0.7348 -6.3769 22 6 1.1876 1.9716 -6.6915 23 6 0.5621 2.7859 -7.6131 24 6 -0.6104 2.3754 -8.2269 25 6 -1.1587 1.1447 -7.9157 26 6 -0.5347 0.3248 -6.9919 27 6 -2.4271 0.9330 -8.7145 28 6 -2.8312 2.3362 -9.2144 29 6 -1.4739 3.0745 -9.2555 30 6 2.5736 0.1865 -4.8318 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.9033 -0.5278 4.4376 35 1 2.2491 -1.6318 -1.1526 36 1 1.1469 -2.2389 -3.1194 37 1 2.2611 -2.6961 -4.4458 38 1 2.1011 2.2956 -6.2152 39 1 0.9885 3.7477 -7.8572 40 1 -0.9631 -0.6362 -6.7486 41 1 -2.2363 0.2710 -9.5590 42 1 -3.2095 0.5183 -8.0788 43 1 -3.2743 2.2804 -10.2087 44 1 -3.5123 2.8165 -8.5120 45 1 -1.6055 4.1231 -8.9889 46 1 -1.0261 2.9898 -10.2456 47 1 3.3763 -0.0529 -5.5293 48 1 2.6323 1.2332 -4.5331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:55 Heat of formation + Delta-G solvation = -39.478968 kcal Electronic energy + Delta-G solvation = -29733.906325 eV Core-core repulsion = 25753.396477 eV Total energy + Delta-G solvation = -3980.509849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45280 -39.92511 -38.91015 -36.80683 -35.69125 -35.02924 -32.95076 -32.30865 -31.14657 -29.86541 -28.59564 -27.82787 -27.16882 -25.26008 -23.93806 -23.25319 -21.48273 -21.04419 -20.74263 -19.61886 -19.46656 -17.90443 -17.51754 -16.52420 -16.33028 -15.86508 -15.68679 -15.53869 -15.21108 -15.05423 -14.63450 -14.34586 -14.01093 -13.65847 -13.60132 -13.36386 -13.24831 -13.11448 -13.07097 -12.75796 -12.50470 -12.25933 -12.10103 -11.99414 -11.78961 -11.74518 -11.56463 -11.38996 -11.30423 -11.22353 -11.11871 -10.86440 -10.24085 -10.04186 -9.77412 -9.70058 -9.30003 -9.29204 -8.82565 -8.81778 -8.28578 -7.86547 -6.26057 -4.29185 1.14209 1.31610 2.42916 2.66165 2.96593 3.20687 3.32405 3.36290 3.63094 3.69628 4.00503 4.12511 4.27268 4.29879 4.39490 4.59498 4.77052 4.87486 4.90737 4.95289 5.07324 5.08880 5.18622 5.23488 5.24565 5.34217 5.43531 5.49941 5.51780 5.56397 5.58925 5.61307 5.71346 5.76027 5.92637 5.96311 6.16594 6.24581 6.25408 6.32019 6.42755 6.50540 6.58439 6.79270 6.95385 6.99748 7.09657 7.18135 7.43768 7.90306 8.03719 8.41625 8.66829 8.78159 9.34396 10.85928 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.016750 B = 0.002599 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.197508 B =10770.479591 C =11296.323853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.237 3.763 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.695 5.695 13 C 0.508 3.492 14 O -0.546 6.546 15 C -0.126 4.126 16 H 0.130 0.870 17 C -0.145 4.145 18 C 0.519 3.481 19 O -0.511 6.511 20 N -0.552 5.552 21 C 0.174 3.826 22 C -0.153 4.153 23 C -0.080 4.080 24 C -0.130 4.130 25 C -0.071 4.071 26 C -0.147 4.147 27 C -0.082 4.082 28 C -0.120 4.120 29 C -0.077 4.077 30 C 0.109 3.891 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.268 0.732 35 H 0.397 0.603 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.153 0.847 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 2.529 -25.322 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.343 5.343 13 C 0.292 3.708 14 O -0.425 6.425 15 C -0.148 4.148 16 H 0.148 0.852 17 C -0.185 4.185 18 C 0.309 3.691 19 O -0.386 6.386 20 N -0.275 5.275 21 C 0.080 3.920 22 C -0.174 4.174 23 C -0.098 4.098 24 C -0.130 4.130 25 C -0.072 4.072 26 C -0.167 4.167 27 C -0.119 4.119 28 C -0.158 4.158 29 C -0.114 4.114 30 C -0.013 4.013 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.230 0.770 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.170 0.830 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.254 3.093 -25.273 25.561 hybrid contribution -0.280 0.298 0.535 0.673 sum -2.534 3.391 -24.738 25.098 Atomic orbital electron populations 1.22457 0.99242 1.00957 0.99360 1.19134 0.90145 0.94666 0.82642 0.93289 1.21009 1.33448 1.14505 0.88460 0.90098 1.24823 0.95427 0.96682 0.95536 1.69862 1.44745 1.40062 0.98076 0.86888 0.80612 0.83590 0.77469 1.20272 1.22097 1.18707 1.46157 1.64625 1.13894 1.09637 1.20033 0.78827 0.87434 0.84527 1.90680 1.50965 1.15968 1.84873 1.22403 1.02373 0.95979 0.94050 0.85198 1.22411 0.97620 0.98245 1.00264 1.21001 0.86123 0.80371 0.81650 1.90617 1.22208 1.65477 1.60317 1.45706 1.20660 1.21066 1.40082 1.17555 0.93195 0.90529 0.90685 1.20686 1.02214 0.93186 1.01266 1.20344 0.94423 0.99178 0.95902 1.20538 0.96413 0.96439 0.99658 1.20387 0.96633 0.94240 0.95917 1.20995 0.95301 1.02544 0.97862 1.21041 0.94385 0.97837 0.98639 1.22330 0.96826 0.95118 1.01511 1.21008 0.93892 0.99192 0.97291 1.22238 0.83452 1.02779 0.92819 0.93358 0.94659 0.92736 0.92217 0.76972 0.86654 0.86193 0.85309 0.85909 0.83005 0.90217 0.90613 0.90619 0.90941 0.90969 0.90575 0.89383 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 8.96 37.16 0.33 -3.29 16 2 C 0.24 5.47 2.15 -69.08 -0.15 5.32 16 3 H 0.05 1.25 6.64 -51.93 -0.34 0.91 16 4 C -0.54 -14.05 9.31 -34.44 -0.32 -14.37 16 5 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -25.94 13.96 55.43 0.77 -25.16 16 8 Si 0.88 21.58 24.37 -169.99 -4.14 17.44 16 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 12 N -0.70 -12.70 4.79 -54.93 -0.26 -12.96 16 13 C 0.51 8.57 7.13 -10.99 -0.08 8.49 16 14 O -0.55 -11.39 15.20 5.55 0.08 -11.30 16 15 C -0.13 -1.39 3.54 -90.04 -0.32 -1.71 16 16 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.15 -1.54 6.38 -26.74 -0.17 -1.71 16 18 C 0.52 7.44 7.92 -10.86 -0.09 7.35 16 19 O -0.51 -8.75 14.82 5.56 0.08 -8.67 16 20 N -0.55 -7.44 3.14 -112.19 -0.35 -7.80 16 21 C 0.17 2.45 6.59 -83.74 -0.55 1.90 16 22 C -0.15 -1.88 9.42 -39.44 -0.37 -2.25 16 23 C -0.08 -0.89 10.03 -39.56 -0.40 -1.29 16 24 C -0.13 -1.46 6.14 -104.14 -0.64 -2.10 16 25 C -0.07 -0.88 6.13 -104.22 -0.64 -1.52 16 26 C -0.15 -2.12 9.29 -39.35 -0.37 -2.49 16 27 C -0.08 -0.78 6.76 -26.85 -0.18 -0.96 16 28 C -0.12 -0.93 7.10 -25.21 -0.18 -1.11 16 29 C -0.08 -0.64 6.77 -26.72 -0.18 -0.82 16 30 C 0.11 1.19 5.91 -3.03 -0.02 1.17 16 31 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.40 6.17 8.36 -40.82 -0.34 5.83 16 36 H 0.12 1.30 7.51 -51.93 -0.39 0.91 16 37 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.13 1.37 6.75 -52.49 -0.35 1.01 16 39 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 40 H 0.15 2.41 5.25 -52.49 -0.28 2.13 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 48 H 0.11 1.32 6.06 -51.93 -0.31 1.00 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -34.15 379.50 -9.37 -43.52 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.86 Total: 6.50 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -4.41 Total: -7.29 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.16 Total: -45.92 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.17 Total: -19.97 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.44 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.15 -9.37 -43.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.038 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds